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A generalized knowledge‐based discriminatory function for biomolecular interactions
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1096-987x(19981115)19:14<1639::aid-jcc10>3.0.co;2-bopenalex-snapshot
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
inferredcites →https://doi.org/10.1002/jcc.20084openalex-snapshot
UCSF Chimera—A visualization system for exploratory research and analysis
inferredcites →https://doi.org/10.1002/jcc.20505openalex-snapshot
An iterative knowledge‐based scoring function to predict protein–ligand interactions: II. Validation of the scoring function
inferredcites →https://doi.org/10.1002/jcc.540120716openalex-snapshot
Determination of molecular topology and atomic hybridization states from heavy atom coordinates
inferredcites →https://doi.org/10.1002/prot.21117openalex-snapshot
PIPER: An FFT‐based protein docking program with pairwise potentials
inferredcites →https://doi.org/10.1002/prot.21162openalex-snapshot
An all‐atom, distance‐dependent scoring function for the prediction of protein–DNA interactions from structure
inferredcites →https://doi.org/10.1002/prot.21502openalex-snapshot
Integrating statistical pair potentials into protein complex prediction
inferredcites →https://doi.org/10.1002/prot.21949openalex-snapshot
An iterative knowledge‐based scoring function for protein–protein recognition
inferredcites →https://doi.org/10.1006/jmbi.1997.1203openalex-snapshot
Modelling protein docking using shape complementarity, electrostatics and biochemical information 1 1Edited by J. Thornton
inferredcites →https://doi.org/10.1006/jmbi.1997.1479openalex-snapshot
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction 1 1Edited by F. Cohen
inferredcites →https://doi.org/10.1007/bf02337562openalex-snapshot
Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures
inferredcites →https://doi.org/10.1016/s0022-2836(05)80269-4openalex-snapshot
Calculation of conformational ensembles from potentials of mena force
inferredcites →https://doi.org/10.1021/jm0203783openalex-snapshot
Comparative Evaluation of 11 Scoring Functions for Molecular Docking
inferredcites →https://doi.org/10.1021/jm049314dopenalex-snapshot
A Knowledge-Based Energy Function for Protein−Ligand, Protein−Protein, and Protein−DNA Complexes
inferredcites →https://doi.org/10.1021/jm050436vopenalex-snapshot
DrugScore CSD Knowledge-Based Scoring Function Derived from Small Molecule Crystal Data with Superior Recognition Rate of Near-Native Ligand Poses and Better Affinity Prediction
inferredcites →https://doi.org/10.1021/jp953141+openalex-snapshot
Intermolecular Nonbonded Contact Distances in Organic Crystal Structures: Comparison with Distances Expected from van der Waals Radii
inferredcites →https://doi.org/10.1038/nrd1549openalex-snapshot
Docking and scoring in virtual screening for drug discovery: methods and applications
inferredcites →https://doi.org/10.1063/1.2811680openalex-snapshot
Introduction to Modern Statistical Mechanics
inferredcites →https://doi.org/10.1093/bioinformatics/bti315openalex-snapshot
Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites
inferredcites →https://doi.org/10.1107/s0108768102003324openalex-snapshot
New software for searching the Cambridge Structural Database and visualizing crystal structures
inferredcites →https://doi.org/10.1107/s0108768102003890openalex-snapshot
The Cambridge Structural Database: a quarter of a million crystal structures and rising
inferredcites →https://doi.org/10.1107/s0907444904023716openalex-snapshot
Developments in theCCP4 molecular-graphics project
inferredcites →https://doi.org/10.1371/journal.pcbi.1000181openalex-snapshot
Protein Meta-Functional Signatures from Combining Sequence, Structure, Evolution, and Amino Acid Property Information
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Lemon: a framework for rapidly mining structural information from the Protein Data Bank
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Oxido-reductive regulation of vascular remodeling by receptor tyrosine kinase ROS1
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Exploration of interaction scoring criteria in the CANDO platform
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Correction: A Structural-Based Strategy for Recognition of Transcription Factor Binding Sites
inferred← citeshttps://doi.org/10.1371/annotation/416be1ef-f439-445a-96f8-b1d2f01c6957openalex-snapshot
Correction: Distal Effect of Amino Acid Substitutions in CYP2C9 Polymorphic Variants Causes Differences in Interatomic Interactions against (S)-Warfarin
inferred← citeshttps://doi.org/10.1371/journal.pone.0013714openalex-snapshot
Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized
inferred← citeshttps://doi.org/10.1371/journal.pone.0052460openalex-snapshot
A Structural-Based Strategy for Recognition of Transcription Factor Binding Sites
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Distal Effect of Amino Acid Substitutions in CYP2C9 Polymorphic Variants Causes Differences in Interatomic Interactions against (S)-Warfarin
inferred← citeshttps://doi.org/10.2174/1381612822666160325121943openalex-snapshot
Exploring Polypharmacology in Drug Discovery and Repurposing Using the CANDO Platform
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Molecular Interactions Using New Technology: A Virtual Reality Gaming Platform to Visualize and Manipulate Molecules
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Accurate Prediction of Inhibitor Binding to HIV-1 Protease Using CANDOCK
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Combating Ebola with Repurposed Therapeutics Using the CANDO Platform
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