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Sub-angstrom modeling of complexes between flexible peptides and globular proteins
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/bip.21164openalex-snapshot
Peptidic modulators of protein‐protein interactions: Progress and challenges in computational design
inferredcites →https://doi.org/10.1002/jmr.984openalex-snapshot
Computational approaches to identifying and characterizing protein binding sites for ligand design
inferredcites →https://doi.org/10.1002/pro.5560060807openalex-snapshot
Bayesian statistical analysis of protein side‐chain rotamer preferences
inferredcites →https://doi.org/10.1002/prot.20556openalex-snapshot
Progress in protein–protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side‐chain flexibility
inferredcites →https://doi.org/10.1002/prot.20831openalex-snapshot
Ab initio prediction of peptide‐MHC binding geometry for diverse class I MHC allotypes
inferredcites →https://doi.org/10.1002/prot.21082openalex-snapshot
Protein–ligand docking: Current status and future challenges
inferredcites →https://doi.org/10.1002/prot.22629openalex-snapshot
DynaDock: A new molecular dynamics‐based algorithm for protein–peptide docking including receptor flexibility
inferredcites →https://doi.org/10.1002/prot.340230412openalex-snapshot
Knowledge‐based protein secondary structure assignment
inferredcites →https://doi.org/10.1007/s10822-008-9216-5openalex-snapshot
A new peptide docking strategy using a mean field technique with mutually orthogonal Latin square sampling
inferredcites →https://doi.org/10.1016/0092-8674(92)90252-8openalex-snapshot
The three-dimensional structure of HLA-B27 at 2.1 Å resolution suggests a general mechanism for tight peptide binding to MHC
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A SPR strategy for high-throughput ligand screenings based on synthetic peptides mimicking a selected subdomain of the target protein: A proof of concept on HER2 receptor
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Peptides as protein binding site mimetics
inferredcites →https://doi.org/10.1016/j.copbio.2008.06.004openalex-snapshot
Peptide-mediated interactions in biological systems: new discoveries and applications
inferredcites →https://doi.org/10.1016/j.jmb.2005.11.059openalex-snapshot
Structural Prediction of Peptides Bound to MHC Class I
inferredcites →https://doi.org/10.1016/j.jmb.2008.05.023openalex-snapshot
Backrub-Like Backbone Simulation Recapitulates Natural Protein Conformational Variability and Improves Mutant Side-Chain Prediction
inferredcites →https://doi.org/10.1016/j.jmb.2009.03.038openalex-snapshot
Structure-Based Prediction of the Saccharomyces cerevisiae SH3–Ligand Interactions
inferredcites →https://doi.org/10.1016/j.jmb.2009.08.063openalex-snapshot
All-Atom Monte Carlo Approach to Protein–Peptide Binding
inferredcites →https://doi.org/10.1016/j.sbi.2009.02.005openalex-snapshot
Protein structure prediction: when is it useful?
inferredcites →https://doi.org/10.1016/j.sbi.2009.02.008openalex-snapshot
Convergence and combination of methods in protein–protein docking
inferredcites →https://doi.org/10.1016/j.sbi.2009.07.003openalex-snapshot
Peptides in the treatment of AIDS
inferredcites →https://doi.org/10.1016/j.str.2009.06.013openalex-snapshot
Protein-Peptide Interactions Adopt the Same Structural Motifs as Monomeric Protein Folds
inferredcites →https://doi.org/10.1016/j.str.2009.10.008openalex-snapshot
Identification of Structural Mechanisms of HIV-1 Protease Specificity Using Computational Peptide Docking: Implications for Drug Resistance
inferredcites →https://doi.org/10.1016/j.str.2009.11.012openalex-snapshot
The Structural Basis of Peptide-Protein Binding Strategies
inferredcites →https://doi.org/10.1016/s0014-5793(01)03307-5openalex-snapshot
Can we infer peptide recognition specificity mediated by SH3 domains?
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Predicting Changes in the Stability of Proteins and Protein Complexes: A Study of More Than 1000 Mutations
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Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations
inferredcites →https://doi.org/10.1016/s0076-6879(04)83004-0openalex-snapshot
Protein Structure Prediction Using Rosetta
inferredcites →https://doi.org/10.1016/s0079-6107(96)00008-9openalex-snapshot
Structure and function of the WW domain
inferredcites →https://doi.org/10.1016/s0959-440x(02)00289-0openalex-snapshot
Coupling of folding and binding for unstructured proteins
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Combinatorial alanine-scanning
inferredcites →https://doi.org/10.1021/bi00838a031openalex-snapshot
Computed circular dichroism spectra for the evaluation of protein conformation
inferredcites →https://doi.org/10.1021/bi9017347openalex-snapshot
Interaction of the Disordered Yersinia Effector Protein YopE with Its Cognate Chaperone SycE
inferredcites →https://doi.org/10.1021/ci800174copenalex-snapshot
Approved Drug Mimics of Short Peptide Ligands from Protein Interaction Motifs
inferredcites →https://doi.org/10.1021/ja032018qopenalex-snapshot
Structural Mining: Self-Consistent Design on Flexible Protein−Peptide Docking and Transferable Binding Affinity Potential
inferredcites →https://doi.org/10.1021/ja054195sopenalex-snapshot
A Flexible Docking Procedure for the Exploration of Peptide Binding Selectivity to Known Structures and Homology Models of PDZ Domains
inferredcites →https://doi.org/10.1021/ja990935jopenalex-snapshot
Computational Alanine Scanning To Probe Protein−Protein Interactions: A Novel Approach To Evaluate Binding Free Energies
inferredcites →https://doi.org/10.1021/jm0302997openalex-snapshot
Evaluation of Docking Performance: Comparative Data on Docking Algorithms
inferredcites →https://doi.org/10.1021/pr0701411openalex-snapshot
Characterization of Molecular Recognition Features, MoRFs, and Their Binding Partners
inferredcites →https://doi.org/10.1038/nature07885openalex-snapshot
Design of protein-interaction specificity gives selective bZIP-binding peptides
inferredcites →https://doi.org/10.1038/nmeth0809-551openalex-snapshot
Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
inferredcites →https://doi.org/10.1038/nrm1589openalex-snapshot
Intrinsically unstructured proteins and their functions
inferredcites →https://doi.org/10.1073/pnas.0700781104openalex-snapshot
Inhibiting HIV-1 integrase by shifting its oligomerization equilibrium
inferredcites →https://doi.org/10.1073/pnas.84.19.6611openalex-snapshot
Monte Carlo-minimization approach to the multiple-minima problem in protein folding.
inferredcites →https://doi.org/10.1073/pnas.89.20.9367openalex-snapshot
Peptoids: a modular approach to drug discovery.
inferredcites →https://doi.org/10.1073/pnas.95.25.14705openalex-snapshot
Identification of protein–protein interfaces by decreased amide proton solvent accessibility
inferredcites →https://doi.org/10.1073/pnas.97.19.10383openalex-snapshot
Native protein sequences are close to optimal for their structures
inferredcites →https://doi.org/10.1093/bioinformatics/16.9.776openalex-snapshot
MaxSub: an automated measure for the assessment of protein structure prediction quality
inferredcites →https://doi.org/10.1093/bioinformatics/btm035openalex-snapshot
Local structural disorder imparts plasticity on linear motifs
inferredcites →https://doi.org/10.1093/bioinformatics/btp036openalex-snapshot
Fragment-based identification of druggable ‘hot spots’ of proteins using Fourier domain correlation techniques
inferredcites →https://doi.org/10.1093/nar/gkg545openalex-snapshot
ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins
inferredcites →https://doi.org/10.1110/ps.0202302openalex-snapshot
Efficient docking of peptides to proteins without prior knowledge of the binding site
inferredcites →https://doi.org/10.1110/ps.0242703openalex-snapshot
Cyclic coordinate descent: A robotics algorithm for protein loop closure
inferredcites →https://doi.org/10.1110/ps.041222905openalex-snapshot
Improved side‐chain modeling for protein–protein docking
inferredcites →https://doi.org/10.1110/ps.04631204openalex-snapshot
Modeling the structure of bound peptide ligands to major histocompatibility complex
inferredcites →https://doi.org/10.1111/j.1742-4658.2009.07251.xopenalex-snapshot
Dynamic interactions of proteins in complex networks: a more structured view
inferredcites →https://doi.org/10.1126/science.1083653openalex-snapshot
Assembly of Cell Regulatory Systems Through Protein Interaction Domains
inferredcites →https://doi.org/10.1126/science.275.5296.73openalex-snapshot
Recognition of Unique Carboxyl-Terminal Motifs by Distinct PDZ Domains
inferredcites →https://doi.org/10.1126/stke.2192004pl2openalex-snapshot
Computational Alanine Scanning of Protein-Protein Interfaces
inferredcites →https://doi.org/10.1137/0801001openalex-snapshot
Variable Metric Method for Minimization
inferredcites →https://doi.org/10.1146/annurev.biochem.77.062906.171838openalex-snapshot
Macromolecular Modeling with Rosetta
inferredcites →https://doi.org/10.1371/journal.pbio.0030405openalex-snapshot
Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks
inferredcites →https://doi.org/10.1371/journal.pcbi.1000335openalex-snapshot
Accurate Prediction of Peptide Binding Sites on Protein Surfaces
inferredcites →https://doi.org/10.1371/journal.pcbi.1000585openalex-snapshot
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure
inferredcites →https://doi.org/10.2174/1389203053545462openalex-snapshot
Design and Structure of Peptide and Peptidomimetic Antagonists of Protein- Protein Interaction
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Flexible docking of peptides to proteins using CABS‐dock
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Molecular determinants of TRAF6 binding specificity suggest that native interaction partners are not optimized for affinity
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Can self‐inhibitory peptides be derived from the interfaces of globular protein–protein interactions?
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Detection of Peptide-Binding Sites on Protein Surfaces Using the Peptimap Server
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inferred← citeshttps://doi.org/10.1016/j.chroma.2025.465937openalex-snapshot
De novo design and discovery of broad-spectrum affinity peptide ligands for influenza A vaccines
inferred← citeshttps://doi.org/10.1016/j.chroma.2026.466890openalex-snapshot
Protein language model-guided generative design of affinity peptides for chromatographic purification of lentiviral vectors
inferred← citeshttps://doi.org/10.1016/j.chroma.2026.467271openalex-snapshot
Leveraging protein language model for maturation of high-affinity peptide ligand in the purification of an adeno‒associated virus vector
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2016.02.012openalex-snapshot
Structure-based design and confirmation of peptide ligands for neuronal polo-like kinase to promote neuroregeneration
inferred← citeshttps://doi.org/10.1016/j.cpc.2020.107716openalex-snapshot
PARCE: Protocol for Amino acid Refinement through Computational Evolution
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.02.002openalex-snapshot
From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.05.048openalex-snapshot
Binding characteristics of staphylococcal protein A and streptococcal protein G for fragment crystallizable portion of human immunoglobulin G
inferred← citeshttps://doi.org/10.1016/j.ejmech.2022.114797openalex-snapshot
HIV-1 gp120-CXCR4 recognition probed with synthetic nanomolar affinity D-peptides containing fragments of gp120 V3 loop
inferred← citeshttps://doi.org/10.1016/j.foodres.2014.08.016openalex-snapshot
Impact of germination and enzymatic hydrolysis of cowpea bean ( Vigna unguiculata ) on the generation of peptides capable of inhibiting dipeptidyl peptidase IV
inferred← citeshttps://doi.org/10.1016/j.foodres.2015.04.041openalex-snapshot
Germination of Phaseolus vulgaris and alcalase hydrolysis of its proteins produced bioactive peptides capable of improving markers related to type-2 diabetes in vitro
inferred← citeshttps://doi.org/10.1016/j.foodres.2015.06.032openalex-snapshot
Pure peptides from amaranth (Amaranthus hypochondriacus) proteins inhibit LOX-1 receptor and cellular markers associated with atherosclerosis development in vitro
inferred← citeshttps://doi.org/10.1016/j.foodres.2015.07.046openalex-snapshot
Hard-to-cook bean ( Phaseolus vulgaris L.) proteins hydrolyzed by alcalase and bromelain produced bioactive peptide fractions that inhibit targets of type-2 diabetes and oxidative stress
inferred← citeshttps://doi.org/10.1016/j.gendis.2023.02.051openalex-snapshot
E674Q (Shanghai APP mutant), a novel amyloid precursor protein mutation, in familial late-onset Alzheimer's disease
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.141889openalex-snapshot
AprMH1 subtilisin from Bacillus zhangzhouensis MH1: Molecular cloning, characterization, and homology modeling
inferred← citeshttps://doi.org/10.1016/j.jbc.2024.107146openalex-snapshot
Cancer-associated polybromo-1 bromodomain 4 missense variants variably impact bromodomain ligand binding and cell growth suppression
inferred← citeshttps://doi.org/10.1016/j.jbc.2024.107947openalex-snapshot
Oligomerization of protein arginine methyltransferase 1 and its functional impact on substrate arginine methylation
inferred← citeshttps://doi.org/10.1016/j.jconrel.2016.09.035openalex-snapshot
A stabilized peptide ligand for multifunctional glioma targeted drug delivery
inferred← citeshttps://doi.org/10.1016/j.jconrel.2017.02.013openalex-snapshot
Differentially cleaving peptides as a strategy for controlled drug release in human retinal pigment epithelial cells
inferred← citeshttps://doi.org/10.1016/j.jconrel.2018.04.035openalex-snapshot
A novel peptide ligand RAP12 of LRP1 for glioma targeted drug delivery
inferred← citeshttps://doi.org/10.1016/j.jmb.2010.07.032openalex-snapshot
Structure-Based Prediction of the Peptide Sequence Space Recognized by Natural and Synthetic PDZ Domains
inferred← citeshttps://doi.org/10.1016/j.jmb.2011.07.005openalex-snapshot
The Molecular Basis of the Caskin1 and Mint1 Interaction with CASK
inferred← citeshttps://doi.org/10.1016/j.jmb.2013.12.007openalex-snapshot
Molecular Insights into the Recognition of N-Terminal Histone Modifications by the BRPF1 Bromodomain
inferred← citeshttps://doi.org/10.1016/j.jmb.2014.10.014openalex-snapshot
Computational Design of Selective Peptides to Discriminate between Similar PDZ Domains in an Oncogenic Pathway
inferred← citeshttps://doi.org/10.1016/j.jmb.2025.169314openalex-snapshot
Condensate Formation of the Human RNA-binding Protein SMAUG1 is Controlled by its Intrinsically Disordered Regions and Interactions with 14-3-3 Proteins
inferred← citeshttps://doi.org/10.1016/j.jmgm.2015.05.004openalex-snapshot
Studying the binding interactions of allosteric agonists and antagonists of the CXCR4 receptor
inferred← citeshttps://doi.org/10.1016/j.jmgm.2016.04.006openalex-snapshot
Discerning the catalytic mechanism of Staphylococcus aureus sortase A with QM/MM free energy calculations
inferred← citeshttps://doi.org/10.1016/j.jpha.2025.101493openalex-snapshot
M1-NP1 interfering-peptide inhibits cancer cell proliferation and migration by targeting the transcription factor FOXM1
inferred← citeshttps://doi.org/10.1016/j.jprot.2013.10.004openalex-snapshot
Proteomic protease specificity profiling of clostridial collagenases reveals their intrinsic nature as dedicated degraders of collagen
inferred← citeshttps://doi.org/10.1016/j.jsb.2014.05.001openalex-snapshot
In silico analysis and experimental verification of OSR1 kinase – Peptide interaction
inferred← citeshttps://doi.org/10.1016/j.jsb.2016.03.013openalex-snapshot
Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B
inferred← citeshttps://doi.org/10.1016/j.meegid.2018.07.001openalex-snapshot
Potential immune escape mutations under inferred selection pressure in HIV-1 strains circulating in Medellín, Colombia
inferred← citeshttps://doi.org/10.1016/j.molcel.2011.02.023openalex-snapshot
The Escherichia coli Extracellular Death Factor EDF Induces the Endoribonucleolytic Activities of the Toxins MazF and ChpBK
inferred← citeshttps://doi.org/10.1016/j.molliq.2022.118759openalex-snapshot
Machine learning assessment of the binding region as a tool for more efficient computational receptor-ligand docking
inferred← citeshttps://doi.org/10.1016/j.nantod.2022.101465openalex-snapshot
A D-peptide ligand of neuropeptide Y receptor Y1 serves as nanocarrier traversing of the blood brain barrier and targets glioma
inferred← citeshttps://doi.org/10.1016/j.nbd.2014.06.018openalex-snapshot
α-Synuclein interacts with the switch region of Rab8a in a Ser129 phosphorylation-dependent manner
inferred← citeshttps://doi.org/10.1016/j.peptides.2020.170367openalex-snapshot
Identification and in vivo validation of a 9-mer peptide derived from FSHβ with FSHR antagonist activity
inferred← citeshttps://doi.org/10.1016/j.sbi.2011.01.005openalex-snapshot
Three-dimensional modeling of protein interactions and complexes is going ‘omics
inferred← citeshttps://doi.org/10.1016/j.sbi.2013.07.006openalex-snapshot
Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how
inferred← citeshttps://doi.org/10.1016/j.semcancer.2021.07.012openalex-snapshot
Virtual screening of potential anticancer drugs based on microbial products
inferred← citeshttps://doi.org/10.1016/j.str.2011.09.014openalex-snapshot
Structural and Dynamic Determinants of Protein-Peptide Recognition
inferred← citeshttps://doi.org/10.1016/j.str.2012.01.006openalex-snapshot
Structural and Functional Discussion of the Tetra-Trico-Peptide Repeat, a Protein Interaction Module
inferred← citeshttps://doi.org/10.1016/j.str.2013.02.023openalex-snapshot
Protein-Peptide Complex Prediction through Fragment Interaction Patterns
inferred← citeshttps://doi.org/10.1016/j.str.2014.07.015openalex-snapshot
Molecular Basis of the Dynamic Structure of the TIM23 Complex in the Mitochondrial Intermembrane Space
inferred← citeshttps://doi.org/10.1016/j.str.2015.05.021openalex-snapshot
Fully Blind Peptide-Protein Docking with pepATTRACT
inferred← citeshttps://doi.org/10.1016/j.str.2016.02.002openalex-snapshot
Structure-Based Identification of HDAC8 Non-histone Substrates
inferred← citeshttps://doi.org/10.1016/j.str.2016.07.021openalex-snapshot
Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction
inferred← citeshttps://doi.org/10.1016/j.tibtech.2011.01.004openalex-snapshot
Computational design of peptide ligands
inferred← citeshttps://doi.org/10.1016/j.toxicon.2021.09.016openalex-snapshot
NPCdc, a synthetic natriuretic peptide, is a substrate to neprilysin and enhances blood pressure-lowering induced by enalapril in 5/6 nephrectomized rats
inferred← citeshttps://doi.org/10.1016/j.virusres.2019.197763openalex-snapshot
Effect of diversity in gp41 membrane proximal external region of primary HIV-1 Indian subtype C sequences on interaction with broadly neutralizing antibodies 4E10 and 10E8
inferred← citeshttps://doi.org/10.1016/j.ymeth.2015.07.004openalex-snapshot
Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking
inferred← citeshttps://doi.org/10.1017/qrd.2022.14openalex-snapshot
Modelling peptide–protein complexes: docking, simulations and machine learning
inferred← citeshttps://doi.org/10.1017/qrd.2022.14.pr1openalex-snapshot
Review: Modeling peptide-protein complexes: docking, simulations and machine learning — R0/PR1
inferred← citeshttps://doi.org/10.1017/qrd.2022.14.pr2openalex-snapshot
Review: Modeling peptide-protein complexes: docking, simulations and machine learning — R0/PR2
inferred← citeshttps://doi.org/10.1017/qrd.2022.14.pr3openalex-snapshot
Recommendation: Modeling peptide-protein complexes: docking, simulations and machine learning — R0/PR3
inferred← citeshttps://doi.org/10.1017/qrd.2022.14.pr4openalex-snapshot
Recommendation: Modeling peptide-protein complexes: docking, simulations and machine learning — R1/PR4
inferred← citeshttps://doi.org/10.1017/qrd.2022.14.pr5openalex-snapshot
Recommendation: Modeling peptide-protein complexes: docking, simulations and machine learning — R2/PR5
inferred← citeshttps://doi.org/10.1021/acs.biochem.3c00096openalex-snapshot
Elucidation of Short Linear Motif-Based Interactions of the FERM Domains of Ezrin, Radixin, Moesin, and Merlin
inferred← citeshttps://doi.org/10.1021/acs.biochem.5c00694openalex-snapshot
Development of Antagonist Peptides of the Crk/CrkL SH2 Domains by Modifying the Peripheral Amino Acid Residues of the YXXP Motif
inferred← citeshttps://doi.org/10.1021/acs.biochem.6b00328openalex-snapshot
Evidence that the Rhodopsin Kinase (GRK1) N-Terminus and the Transducin Gα C-Terminus Interact with the Same “Hydrophobic Patch” on Rhodopsin TM5
inferred← citeshttps://doi.org/10.1021/acs.biochem.6b00444openalex-snapshot
Protocols for Molecular Modeling with Rosetta3 and RosettaScripts
inferred← citeshttps://doi.org/10.1021/acs.biochem.7b00601openalex-snapshot
Bacillus anthracis Prolyl 4-Hydroxylase Interacts with and Modifies Elongation Factor Tu
inferred← citeshttps://doi.org/10.1021/acs.chemrev.1c00757openalex-snapshot
Protein Design: From the Aspect of Water Solubility and Stability
inferred← citeshttps://doi.org/10.1021/acs.chemrev.4c00807openalex-snapshot
A Computational Perspective to Intermolecular Interactions and the Role of the Solvent on Regulating Protein Properties
inferred← citeshttps://doi.org/10.1021/acs.chemrev.6c00100openalex-snapshot
Computational Platforms for Membrane-Active Peptide Therapeutic Design
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c00378openalex-snapshot
Deorphanizing Peptides Using Structure Prediction
inferred← citeshttps://doi.org/10.1021/acs.jcim.3c01667openalex-snapshot
APE-Gen2.0: Expanding Rapid Class I Peptide–Major Histocompatibility Complex Modeling to Post-Translational Modifications and Noncanonical Peptide Geometries
inferred← citeshttps://doi.org/10.1021/acs.jcim.5b00234openalex-snapshot
LEADS-PEP: A Benchmark Data Set for Assessment of Peptide Docking Performance
inferred← citeshttps://doi.org/10.1021/acs.jcim.5c02430openalex-snapshot
Subtimizer: Computational Workflow for Structure-Guided Design of Potent and Selective Kinase Peptide Substrates
inferred← citeshttps://doi.org/10.1021/acs.jcim.6c00902openalex-snapshot
Strategic Template Filtering Accelerates Fragment-Based Peptide Docking
inferred← citeshttps://doi.org/10.1021/acs.jctc.1c00789openalex-snapshot
Enhanced Molecular Dynamics Method to Efficiently Increase the Discrimination Capability of Computational Protein–Protein Docking
inferred← citeshttps://doi.org/10.1021/acs.jctc.5c00995openalex-snapshot
Flexible Docking of Cyclic Peptides to Proteins Using CABS-dock
inferred← citeshttps://doi.org/10.1021/acs.jctc.5c01785openalex-snapshot
Efficient Protein–Ligand Binding Free Energy Estimation with Coarse-Grained Funnel Metadynamics
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.2c00968openalex-snapshot
In Silico Exploration and Biological Evaluation of Bispecific Peptides Derived from Anti-HER2 Antibodies and Peptide–Camptothecin Conjugates for HER2-Positive Breast Cancer
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.3c01128openalex-snapshot
Development of N-Terminally Modified Variants of the CXCR4-Antagonistic Peptide EPI-X4 for Enhanced Plasma Stability
inferred← citeshttps://doi.org/10.1021/acs.jpca.3c04395openalex-snapshot
Vibrational Analysis of Constrained Molecular Systems
inferred← citeshttps://doi.org/10.1021/acs.jpcb.0c05981openalex-snapshot
Rosetta Machine Learning Models Accurately Classify Positional Effects of Thioamides on Proteolysis
inferred← citeshttps://doi.org/10.1021/acs.jpcb.1c00910openalex-snapshot
Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta
inferred← citeshttps://doi.org/10.1021/acs.jpcb.9b00071openalex-snapshot
Biophysical Consequences of EVEN-PLUS Syndrome Mutations for the Function of Mortalin
inferred← citeshttps://doi.org/10.1021/acs.jpcb.9b04227openalex-snapshot
Mechanism of Phosphatidylglycerol Activation Catalyzed by Prolipoprotein Diacylglyceryl Transferase
inferred← citeshttps://doi.org/10.1021/acs.molpharmaceut.7b00801openalex-snapshot
Structure Reconstruction of LyP-1: Lc(LyP-1) Coupling by Amide Bond Inspires the Brain Metastatic Tumor Targeted Drug Delivery
inferred← citeshttps://doi.org/10.1021/acsabm.5c00582openalex-snapshot
Engineered Peptide Scrambling for Enhanced Drug Delivery to Resistant Breast Cancer Cells via Small Extracellular Vesicles
inferred← citeshttps://doi.org/10.1021/acsami.6b01300openalex-snapshot
Stabilized Heptapeptide A7R for Enhanced Multifunctional Liposome-Based Tumor-Targeted Drug Delivery
inferred← citeshttps://doi.org/10.1021/acscatal.0c04609openalex-snapshot
Structural Basis for Peptide Substrate Specificities of Glycosyltransferase GalNAc-T2
inferred← citeshttps://doi.org/10.1021/acschembio.0c00848openalex-snapshot
Semiprocessive Hyperglycosylation of Adhesin by Bacterial Protein N -Glycosyltransferases
inferred← citeshttps://doi.org/10.1021/acschembio.1c00382openalex-snapshot
Engineering of a Small Protein Scaffold To Recognize Sulfotyrosine with High Specificity
inferred← citeshttps://doi.org/10.1021/acschembio.2c00177openalex-snapshot
Targeting Protein Interaction Hotspots Using Structured and Disordered Chimeric Peptide Inhibitors
inferred← citeshttps://doi.org/10.1021/acschembio.4c00312openalex-snapshot
A Chemical Approach to Assess the Impact of Post-translational Modification on MHC Peptide Binding and Effector Cell Engagement
inferred← citeshttps://doi.org/10.1021/acschembio.5b00663openalex-snapshot
Dynamic Docking of Conformationally Constrained Macrocycles: Methods and Applications
inferred← citeshttps://doi.org/10.1021/acschembio.6b01084openalex-snapshot
Determinants of BH3 Sequence Specificity for the Disruption of Bcl-xL/cBid Complexes in Membranes
inferred← citeshttps://doi.org/10.1021/acsnano.8b09681openalex-snapshot
Oriented Assembly of Cell-Mimicking Nanoparticles via a Molecular Affinity Strategy for Targeted Drug Delivery
inferred← citeshttps://doi.org/10.1021/acsnano.9b05679openalex-snapshot
Overcoming the Reticuloendothelial System Barrier to Drug Delivery with a “Don’t-Eat-Us” Strategy
inferred← citeshttps://doi.org/10.1021/acsnanoscienceau.1c00008openalex-snapshot
Ligand Ratio Plays a Critical Role in the Design of Optimal Multifunctional Gold Nanoclusters for Targeted Gastric Cancer Therapy
inferred← citeshttps://doi.org/10.1021/bi100822qopenalex-snapshot
Allosteric Regulation of Glycogen Synthase Kinase 3β: A Theoretical Study
inferred← citeshttps://doi.org/10.1021/bi3003567openalex-snapshot
In Silico and in Vitro Elucidation of BH3 Binding Specificity toward Bcl-2
inferred← citeshttps://doi.org/10.1021/ci400128mopenalex-snapshot
Improved Docking of Polypeptides with Glide
inferred← citeshttps://doi.org/10.1021/ci500393hopenalex-snapshot
Subangstrom Accuracy in pHLA-I Modeling by Rosetta FlexPepDock Refinement Protocol
inferred← citeshttps://doi.org/10.1021/ct200873yopenalex-snapshot
Designing Short Peptides with High Affinity for Organic Molecules: A Combined Docking, Molecular Dynamics, And Monte Carlo Approach
inferred← citeshttps://doi.org/10.1021/jacs.7b08417openalex-snapshot
Thioamide Substitution Selectively Modulates Proteolysis and Receptor Activity of Therapeutic Peptide Hormones
inferred← citeshttps://doi.org/10.1021/la4046012openalex-snapshot
Biomimetic Design of Platelet Adhesion Inhibitors to Block Integrin α2β1-Collagen Interactions: II. Inhibitor Library, Screening, and Experimental Validation
inferred← citeshttps://doi.org/10.1038/emboj.2011.428openalex-snapshot
Guanylate kinase domains of the MAGUK family scaffold proteins as specific phospho‐protein‐binding modules
inferred← citeshttps://doi.org/10.1038/mp.2015.208openalex-snapshot
Sexual divergence in microtubule function: the novel intranasal microtubule targeting SKIP normalizes axonal transport and enhances memory
inferred← citeshttps://doi.org/10.1038/ncb3423openalex-snapshot
Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery
inferred← citeshttps://doi.org/10.1038/ncomms2221openalex-snapshot
Cholesterol modulates cell signaling and protein networking by specifically interacting with PDZ domain-containing scaffold proteins
inferred← citeshttps://doi.org/10.1038/nprot.2016.180openalex-snapshot
Modeling and docking of antibody structures with Rosetta
inferred← citeshttps://doi.org/10.1038/s41417-024-00855-8openalex-snapshot
The antitumor peptide M1-20 induced the degradation of CDK1 through CUL4-DDB1-DCAF1-involved ubiquitination
inferred← citeshttps://doi.org/10.1038/s41419-023-06056-9openalex-snapshot
Development of an interfering peptide M1-20 with potent anti-cancer effects by targeting FOXM1
inferred← citeshttps://doi.org/10.1038/s41467-017-01678-yopenalex-snapshot
An unexpected protein interaction promotes drug resistance in leukemia
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