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Direct methods for computing single‐molecule entropies from molecular simulations

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inferredcites →https://doi.org/10.1002/047174882xopenalex-snapshot
Elements of Information Theory
inferredcites →https://doi.org/10.1002/1097-0134(20010401)43:1<45::aid-prot1016>3.0.co;2-nopenalex-snapshot
Entropy calculations on a reversibly folding peptide: Changes in solute free energy cannot explain folding behavior
inferredcites →https://doi.org/10.1002/anie.200502655openalex-snapshot
Biomolecular Modeling: Goals, Problems, Perspectives
inferredcites →https://doi.org/10.1002/jcc.10379openalex-snapshot
Converging free energy estimates: MM‐PB(GB)SA studies on the protein–protein complex Ras–Raf
inferredcites →https://doi.org/10.1002/jcc.20589openalex-snapshot
Nearest‐neighbor nonparametric method for estimating the configurational entropy of complex molecules
inferredcites →https://doi.org/10.1002/jcc.20919openalex-snapshot
Efficient calculation of configurational entropy from molecular simulations by combining the mutual‐information expansion and nearest‐neighbor methods
inferredcites →https://doi.org/10.1002/jcc.22891openalex-snapshot
Evaluation of protein‐ligand binding free energy focused on its entropic components
inferredcites →https://doi.org/10.1002/jcc.22933openalex-snapshot
Influence of the solvent representation on vibrational entropy calculations: Generalized born versus distance‐dependent dielectric model
inferredcites →https://doi.org/10.1002/jcc.23350openalex-snapshot
CENCALC: A computational tool for conformational entropy calculations from molecular simulations
inferredcites →https://doi.org/10.1002/jmr.973openalex-snapshot
Methods for calculating the absolute entropy and free energy of biological systems based on ideas from polymer physics
inferredcites →https://doi.org/10.1002/pro.5560041101openalex-snapshot
Side‐chain conformational entropy in protein folding
inferredcites →https://doi.org/10.1002/prot.22493openalex-snapshot
Kinetic and binding effects in peptide substrate selectivity of matrix metalloproteinase‐2: Molecular dynamics and QM/MM calculations
inferredcites →https://doi.org/10.1002/prot.22689openalex-snapshot
A comprehensive examination of the contributions to the binding entropy of protein–ligand complexes
inferredcites →https://doi.org/10.1007/128_2012_418openalex-snapshot
A Surprising Role for Conformational Entropy in Protein Function
inferredcites →https://doi.org/10.1007/978-3-540-38448-9openalex-snapshot
Free Energy Calculations
inferredcites →https://doi.org/10.1007/978-3-540-38448-9_6openalex-snapshot
Understanding and Improving Free Energy Calculations in Molecular Simulations: Error Analysis and Reduction Methods
inferredcites →https://doi.org/10.1007/s10822-008-9238-zopenalex-snapshot
An improved method to predict the entropy term with the MM/PBSA approach
inferredcites →https://doi.org/10.1016/0009-2614(93)89366-popenalex-snapshot
Estimation of absolute and relative entropies of macromolecules using the covariance matrix
inferredcites →https://doi.org/10.1016/j.bpj.2008.11.019openalex-snapshot
Correlated Motions and Interactions at the Onset of the DNA-Induced Partial Unfolding of Ets-1
inferredcites →https://doi.org/10.1016/j.bpj.2009.12.2088openalex-snapshot
Adaptive Anisotropic Kernels for Nonparametric Estimation of Absolute Configurational Entropies in High-Dimensional Configuration Spaces
inferredcites →https://doi.org/10.1016/j.jmb.2009.04.003openalex-snapshot
Configurational Entropy in Protein–Peptide Binding:
inferredcites →https://doi.org/10.1016/j.jmb.2009.05.068openalex-snapshot
Calculation of Proteins’ Total Side-Chain Torsional Entropy and Its Influence on Protein–Ligand Interactions
inferredcites →https://doi.org/10.1016/j.sbi.2012.11.005openalex-snapshot
The dark energy of proteins comes to light: conformational entropy and its role in protein function revealed by NMR relaxation
inferredcites →https://doi.org/10.1016/s0006-3495(87)83303-9openalex-snapshot
Configurational entropy of native proteins
inferredcites →https://doi.org/10.1016/s0006-3495(97)78756-3openalex-snapshot
The statistical-thermodynamic basis for computation of binding affinities: a critical review
inferredcites →https://doi.org/10.1016/s0959-440x(97)80028-0openalex-snapshot
Entropy in protein folding and in protein—protein interactions
inferredcites →https://doi.org/10.1017/cbo9780511619076openalex-snapshot
A Practical Introduction to the Simulation of Molecular Systems
inferredcites →https://doi.org/10.1021/ci300064dopenalex-snapshot
Develop and Test a Solvent Accessible Surface Area-Based Model in Conformational Entropy Calculations
inferredcites →https://doi.org/10.1021/ci400263topenalex-snapshot
Accelerated Conformational Entropy Calculations Using Graphic Processing Units
inferredcites →https://doi.org/10.1021/cr040422hopenalex-snapshot
Characterization of the Fast Dynamics of Protein Amino Acid Side Chains Using NMR Relaxation in Solution
inferredcites →https://doi.org/10.1021/cr200093jopenalex-snapshot
Fragmentation Methods: A Route to Accurate Calculations on Large Systems
inferredcites →https://doi.org/10.1021/cr800551wopenalex-snapshot
Theory of Free Energy and Entropy in Noncovalent Binding
inferredcites →https://doi.org/10.1021/ct0500904openalex-snapshot
Evaluating the Accuracy of the Quasiharmonic Approximation
inferredcites →https://doi.org/10.1021/ct100095popenalex-snapshot
Ligand Entropy in Gas-Phase, Upon Solvation and Protein Complexation. Fast Estimation with Quasi-Newton Hessian
inferredcites →https://doi.org/10.1021/ct100543copenalex-snapshot
Configurational Entropy Reallocation and Complex Loop Dynamics of the Mosquito-Stage Pvs25 Protein Complexed with the Fab Fragment of the Malaria Transmission Blocking Antibody 2A8
inferredcites →https://doi.org/10.1021/ct200216nopenalex-snapshot
Entropy Calculations of Single Molecules by Combining the Rigid–Rotor and Harmonic-Oscillator Approximations with Conformational Entropy Estimations from Molecular Dynamics Simulations
inferredcites →https://doi.org/10.1021/ct200910zopenalex-snapshot
Balanced and Bias-Corrected Computation of Conformational Entropy Differences for Molecular Trajectories
inferredcites →https://doi.org/10.1021/ct300082qopenalex-snapshot
On the Contribution of Linear Correlations to Quasi-harmonic Conformational Entropy in Proteins
inferredcites →https://doi.org/10.1021/ct300358uopenalex-snapshot
Dynamic and Thermodynamic Signatures of Native and Non-Native Protein States with Application to the Improvement of Protein Structures
inferredcites →https://doi.org/10.1021/ct300377aopenalex-snapshot
Exploring Residue Component Contributions to Dynamical Network Models of Allostery
inferredcites →https://doi.org/10.1021/ct300418hopenalex-snapshot
MMPBSA.py : An Efficient Program for End-State Free Energy Calculations
inferredcites →https://doi.org/10.1021/ct300901xopenalex-snapshot
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inferredcites →https://doi.org/10.1021/ct400484uopenalex-snapshot
Absolute Free Energy of Binding and Entropy of the FKBP12-FK506 Complex: Effects of the Force Field
inferredcites →https://doi.org/10.1021/ct400747sopenalex-snapshot
Conformational Entropies and Order Parameters: Convergence, Reproducibility, and Transferability
inferredcites →https://doi.org/10.1021/ct900078kopenalex-snapshot
Thermodynamic Properties of Liquid Water: An Application of a Nonparametric Approach to Computing the Entropy of a Neat Fluid
inferredcites →https://doi.org/10.1021/ct9001812openalex-snapshot
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inferredcites →https://doi.org/10.1021/ct900373zopenalex-snapshot
Absolute Single-Molecule Entropies from Quasi-Harmonic Analysis of Microsecond Molecular Dynamics: Correction Terms and Convergence Properties
inferredcites →https://doi.org/10.1021/ja016233nopenalex-snapshot
Cooperativity in Drug−DNA Recognition: A Molecular Dynamics Study
inferredcites →https://doi.org/10.1021/ja075976ropenalex-snapshot
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inferredcites →https://doi.org/10.1021/ja0779250openalex-snapshot
Rapid and Accurate Prediction of Binding Free Energies for Saquinavir-Bound HIV-1 Proteases
inferredcites →https://doi.org/10.1021/ja3080117openalex-snapshot
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inferredcites →https://doi.org/10.1021/ja405200uopenalex-snapshot
Microscopic Insights into the NMR Relaxation-Based Protein Conformational Entropy Meter
inferredcites →https://doi.org/10.1021/ja806475kopenalex-snapshot
Protein Side-Chain Dynamics and Residual Conformational Entropy
inferredcites →https://doi.org/10.1021/ja902477sopenalex-snapshot
A Dictionary for Protein Side-Chain Entropies from NMR Order Parameters
inferredcites →https://doi.org/10.1021/jp010321copenalex-snapshot
Use of DFT Methods for the Calculation of the Entropy of Gas Phase Organic Molecules: An Examination of the Quality of Results from a Simple Approach
inferredcites →https://doi.org/10.1021/jp046022fopenalex-snapshot
Absolute and Relative Entropies from Computer Simulation with Applications to Ligand Binding
inferredcites →https://doi.org/10.1021/jp066312ropenalex-snapshot
Calculation of Entropy and Heat Capacity of Organic Compounds in the Gas Phase. Evaluation of a Consistent Method without Adjustable Parameters. Applications to Hydrocarbons
inferredcites →https://doi.org/10.1021/jp110434sopenalex-snapshot
Symmetry Numbers for Rigid, Flexible, and Fluxional Molecules: Theory and Applications
inferredcites →https://doi.org/10.1021/jp111176xopenalex-snapshot
Calculation of Configurational Entropy with a Boltzmann–Quasiharmonic Model: The Origin of High-Affinity Protein–Ligand Binding
inferredcites →https://doi.org/10.1021/jp2068123openalex-snapshot
Efficient Calculation of Molecular Configurational Entropies Using an Information Theoretic Approximation
inferredcites →https://doi.org/10.1021/jp211088dopenalex-snapshot
Alternative Interdomain Configurations of the Full-Length MMP-2 Enzyme Explored by Molecular Dynamics Simulations
inferredcites →https://doi.org/10.1021/jp3080578openalex-snapshot
A Simplified Confinement Method for Calculating Absolute Free Energies and Free Energy and Entropy Differences
inferredcites →https://doi.org/10.1021/jp401049hopenalex-snapshot
Conformational Entropy of Intrinsically Disordered Protein
inferredcites →https://doi.org/10.1021/jp811063vopenalex-snapshot
Toward Accurate Microscopic Calculation of Solvation Entropies: Extending the Restraint Release Approach to Studies of Solvation Effects
inferredcites →https://doi.org/10.1021/jp900308yopenalex-snapshot
Absolute Free Energy and Entropy of a Mobile Loop of the Enzyme Acetylcholinesterase
inferredcites →https://doi.org/10.1021/jp9020646openalex-snapshot
Calculation of Free-Energy Differences by Confinement Simulations. Application to Peptide Conformers
inferredcites →https://doi.org/10.1021/jp981195oopenalex-snapshot
Theoretical ab Initio Calculation of Entropy, Heat Capacity, and Heat Content
inferredcites →https://doi.org/10.1021/ma00140a029openalex-snapshot
Free energy determination of polypeptide conformations generated by molecular dynamics
inferredcites →https://doi.org/10.1021/ma50003a019openalex-snapshot
Method for estimating the configurational entropy of macromolecules
inferredcites →https://doi.org/10.1038/nature05959openalex-snapshot
Conformational entropy in molecular recognition by proteins
inferredcites →https://doi.org/10.1038/nchembio.565openalex-snapshot
Behind the folding funnel diagram
inferredcites →https://doi.org/10.1039/c1cp21779hopenalex-snapshot
Configurational entropy: an improvement of the quasiharmonic approximation using configurational temperature
inferredcites →https://doi.org/10.1039/c2cp23961bopenalex-snapshot
Will molecular dynamics simulations of proteins ever reach equilibrium?
inferredcites →https://doi.org/10.1063/1.1309534openalex-snapshot
Absolute entropies from molecular dynamics simulation trajectories
inferredcites →https://doi.org/10.1063/1.1401821openalex-snapshot
On the calculation of entropy from covariance matrices of the atomic fluctuations
inferredcites →https://doi.org/10.1063/1.1421362openalex-snapshot
Determining the shear viscosity of model liquids from molecular dynamics simulations
inferredcites →https://doi.org/10.1063/1.1636153openalex-snapshot
Estimating entropies from molecular dynamics simulations
inferredcites →https://doi.org/10.1063/1.2138696openalex-snapshot
Evaluating the conformational entropy of macromolecules using an energy decomposition approach
inferredcites →https://doi.org/10.1063/1.2746329openalex-snapshot
Extraction of configurational entropy from molecular simulations via an expansion approximation
inferredcites →https://doi.org/10.1063/1.451296openalex-snapshot
Corrections to the quasiharmonic approximation for evaluating molecular entropies
inferredcites →https://doi.org/10.1063/1.4742816openalex-snapshot
A generalized many-body expansion and a unified view of fragment-based methods in electronic structure theory
inferredcites →https://doi.org/10.1063/1.4748104openalex-snapshot
Multibody local approximation: Application to conformational entropy calculations on biomolecules
inferredcites →https://doi.org/10.1073/pnas.0610494104openalex-snapshot
Ligand configurational entropy and protein binding
inferredcites →https://doi.org/10.1073/pnas.1213180109openalex-snapshot
Entropy–enthalpy transduction caused by conformational shifts can obscure the forces driving protein–ligand binding
inferredcites →https://doi.org/10.1080/01966324.2003.10737616openalex-snapshot
Nearest Neighbor Estimates of Entropy
inferredcites →https://doi.org/10.1093/bioinformatics/btp109openalex-snapshot
MIST: Maximum Information Spanning Trees for dimension reduction of biological data sets
inferredcites →https://doi.org/10.1103/physreve.62.3096openalex-snapshot
Physical nature of higher-order mutual information: Intrinsic correlations and frustration
inferredcites →https://doi.org/10.1103/physreve.80.011913openalex-snapshot
Adaptive anisotropic kernels for nonparametric estimation of absolute configurational entropies in high-dimensional configuration spaces
inferredcites →https://doi.org/10.1103/physrevlett.102.118108openalex-snapshot
In silico Relationship between Configurational Entropy and Soft Degrees of Freedom in Proteins and Peptides
inferredcites →https://doi.org/10.1126/science.1187409openalex-snapshot
Atomic-Level Characterization of the Structural Dynamics of Proteins
inferredcites →https://doi.org/10.1126/science.1231552openalex-snapshot
Entropies of Adsorbed Molecules Exceed Expectations
inferredcites →https://doi.org/10.1142/4570openalex-snapshot
Statistical Mechanics
inferredcites →https://doi.org/10.1142/6469openalex-snapshot
A Farewell to Entropy
inferredcites →https://doi.org/10.1142/9781860949920_0019openalex-snapshot
CONFORMATIONAL ENTROPY OF BIOMOLECULES: BEYOND THE QUASI-HARMONIC APPROXIMATION
inferredcites →https://doi.org/10.1142/9789812790736openalex-snapshot
A Farewell to Entropy - Statistical Thermodynamics Based on Information
inferredcites →https://doi.org/10.1146/annurev-biophys-042910-155255openalex-snapshot
Equilibrium Sampling in Biomolecular Simulations
inferredcites →https://doi.org/10.1146/annurev-biophys-083012-130318openalex-snapshot
Entropy-Enthalpy Compensation: Role and Ramifications in Biomolecular Ligand Recognition and Design
inferredcites →https://doi.org/10.1371/journal.pcbi.0020168openalex-snapshot
On Side-Chain Conformational Entropy of Proteins
inferredcites →https://doi.org/10.1529/biophysj.104.049494openalex-snapshot
Calculation of Cyclodextrin Binding Affinities: Energy, Entropy, and Implications for Drug Design
inferredcites →https://doi.org/10.3390/e12030578openalex-snapshot
Thermodynamic and Differential Entropy under a Change of Variables
inferredcites →https://doi.org/10.3390/e13081533openalex-snapshot
Distinguishability in Entropy Calculations: Chemical Reactions, Conformational and Residual Entropy
inferredcites →https://doi.org/10.48550/arxiv.0811.3579openalex-snapshot
Entropy inference and the James-Stein estimator, with application to nonlinear gene association networks
inferredcites →https://doi.org/10.5860/choice.48-2065openalex-snapshot
Statistical physics of biomolecules: an introduction

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inferred← citeshttps://doi.org/10.12688/openreseurope.13738.1zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.12688/openreseurope.13738.2zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.12688/openreseurope.13738.3zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.1002/cphc.201500169openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/prot.26411openalex-snapshot
Total free energy analysis of fully hydrated proteins
inferred← citeshttps://doi.org/10.1002/wcms.1691openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-1-4939-6863-3_7openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-12-809450-1.00002-8openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/b978-0-443-30042-4.00016-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.bpj.2015.11.3527openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cplett.2024.141827openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jinorgbio.2024.112807openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jmgm.2019.107455openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molliq.2021.118457openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.molliq.2022.121102openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.inorgchem.8b00190openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.0c00611openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.0c00746openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.2c00757openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.7b00355openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.8b00143openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.8b00805openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jcim.8b00925openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jctc.0c00642openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jctc.0c00764openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jctc.0c00978openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jctc.3c00265openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jctc.6b00470openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jctc.7b01079openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jpca.1c00971openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acs.jpca.5c04885openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acsomega.1c07037openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/acsomega.2c00999openalex-snapshot
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inferred← citeshttps://doi.org/10.1021/ct500696popenalex-snapshot
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inferred← citeshttps://doi.org/10.1021/ct500700dopenalex-snapshot
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inferred← citeshttps://doi.org/10.1039/c6cp01042copenalex-snapshot
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inferred← citeshttps://doi.org/10.1039/c6cp06107aopenalex-snapshot
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inferred← citeshttps://doi.org/10.1039/d1sc00621eopenalex-snapshot
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inferred← citeshttps://doi.org/10.1063/1.4996847openalex-snapshot
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inferred← citeshttps://doi.org/10.1063/1.5054273openalex-snapshot
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inferred← citeshttps://doi.org/10.1063/5.0197592openalex-snapshot
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inferred← citeshttps://doi.org/10.2174/9798898812164125080007openalex-snapshot
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inferred← citeshttps://doi.org/10.26434/chemrxiv.13626083openalex-snapshot
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inferred← citeshttps://doi.org/10.31274/td-20240329-649openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/biophysica1030021openalex-snapshot
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inferred← citeshttps://doi.org/10.48550/arxiv.1909.04726openalex-snapshot
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