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Thermostat Algorithms for Molecular Dynamics Simulations

https://doi.org/10.1007/b99427
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inferredcites →https://doi.org/10.1016/s0076-6879(94)39024-xopenalex-snapshot
[22] Accounting for molecular mobility in structure determination based on nuclear magnetic resonance spectroscopic and X-ray diffraction data
inferredcites →https://doi.org/10.1093/oso/9780198803195.001.0001openalex-snapshot
Computer Simulation of Liquids

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Thermodynamic properties and critical parameters of HFO-1123 and its binary blends with HFC-32 and HFC-134a using molecular simulations
inferred← citeshttps://doi.org/10.1016/j.ijrefrig.2019.08.001openalex-snapshot
Model evaluation of lithium bromide aqueous solution and characteristics of water transport behaviors in liquid–vapor systems by molecular dynamics
inferred← citeshttps://doi.org/10.1016/j.ijthermalsci.2019.04.001openalex-snapshot
Comparative molecular dynamics simulations of homogeneous condensation of refrigerants
inferred← citeshttps://doi.org/10.1016/j.ijthermalsci.2020.106599openalex-snapshot
Jump in the conduction heat flux at the gas/solid interface in micro-channels
inferred← citeshttps://doi.org/10.1016/j.imu.2024.101485openalex-snapshot
In-silico studies of hydroxyxanthone derivatives as potential pfDHFR and pfDHODH inhibitor by molecular docking, molecular dynamics simulation, MM-PBSA calculation and pharmacokinetics prediction
inferred← citeshttps://doi.org/10.1016/j.jallcom.2019.06.097openalex-snapshot
The prominent combination of ultrahigh strength and superior tensile plasticity in Cu–Zr nanoglass connected by oxide interfaces: A molecular dynamics study
inferred← citeshttps://doi.org/10.1016/j.jbc.2023.104970openalex-snapshot
Molecular dynamics simulations reveal the hidden EF-hand of EF-SAM as a possible key thermal sensor for STIM1 activation by temperature
inferred← citeshttps://doi.org/10.1016/j.jcp.2010.09.004openalex-snapshot
Discretization errors in molecular dynamics simulations with deterministic and stochastic thermostats
inferred← citeshttps://doi.org/10.1016/j.jcp.2012.05.007openalex-snapshot
Proper orthogonal decomposition of atomistic flow simulations
inferred← citeshttps://doi.org/10.1016/j.jics.2021.100064openalex-snapshot
In-silico investigation of the conformational properties of the disaccharide units of chondroitin, dermatan and heparan sulphate in aqueous medium
inferred← citeshttps://doi.org/10.1016/j.jmgm.2013.12.001openalex-snapshot
Homology modeling of T. cruzi and L. major NADH-dependent fumarate reductases: Ligand docking, molecular dynamics validation, and insights on their binding modes
inferred← citeshttps://doi.org/10.1016/j.jmgm.2014.07.001openalex-snapshot
In silico screening and study of novel ERK2 inhibitors using 3D QSAR, docking and molecular dynamics
inferred← citeshttps://doi.org/10.1016/j.jmgm.2015.11.009openalex-snapshot
Coarse-grained bond and angle distributions from atomistic simulations: On the systematic parameterisation of lipid models
inferred← citeshttps://doi.org/10.1016/j.jmgm.2016.11.002openalex-snapshot
Effect of solvent model when probing protein dynamics with molecular dynamics
inferred← citeshttps://doi.org/10.1016/j.jmgm.2021.107981openalex-snapshot
Computational evidence of new putative allosteric sites in the acetylcholinesterase receptor
inferred← citeshttps://doi.org/10.1016/j.jmgm.2021.108077openalex-snapshot
Binding interaction of a potential statin with β-lactoglobulin: An in silico approach
inferred← citeshttps://doi.org/10.1016/j.jmps.2013.10.013openalex-snapshot
Modeling of slow time-scale behavior of fast molecular dynamic systems
inferred← citeshttps://doi.org/10.1016/j.jmps.2014.10.002openalex-snapshot
Coupling the finite element method and molecular dynamics in the framework of the heterogeneous multiscale method for quasi-static isothermal problems
inferred← citeshttps://doi.org/10.1016/j.jmps.2016.05.024openalex-snapshot
A stochastic approximation approach to improve the convergence behavior of hierarchical atomistic-to-continuum multiscale models
inferred← citeshttps://doi.org/10.1016/j.jnucmat.2015.09.037openalex-snapshot
Dynamic process of H-controlled oxygen concentration in LBE: A first-principles study
inferred← citeshttps://doi.org/10.1016/j.jnucmat.2021.152872openalex-snapshot
Molecular dynamics simulations of radiation cascade evolution near cellular dislocation structures in additively manufactured stainless steels
inferred← citeshttps://doi.org/10.1016/j.jpcs.2026.114062openalex-snapshot
First principles investigation of Janus MoXO-ZnO van der Waals heterostructures for optoelectronic, photocatalytic and sustainable energy applications
inferred← citeshttps://doi.org/10.1016/j.jssc.2026.126382openalex-snapshot
Structural, electronic, interfacial and optical properties of ZnS-GaInX3 (X= S, Se, Te) vdWHs with strain engineering of ZnS-GaInSe3
inferred← citeshttps://doi.org/10.1016/j.matpr.2019.11.118openalex-snapshot
Obtaining, structure and gas sensor properties of nanopowder metal oxides
inferred← citeshttps://doi.org/10.1016/j.mechmat.2015.02.007openalex-snapshot
Finite-temperature non-equilibrium quasi-continuum analysis of nanovoid growth in copper at low and high strain rates
inferred← citeshttps://doi.org/10.1016/j.memsci.2015.08.033openalex-snapshot
Water diffusion in zeolite membranes: Molecular dynamics studies on effects of water loading and thermostat
inferred← citeshttps://doi.org/10.1016/j.memsci.2022.120874openalex-snapshot
Investigation of membrane fouling phenomenon using molecular dynamics simulations: A review
inferred← citeshttps://doi.org/10.1016/j.micromeso.2017.04.044openalex-snapshot
A non-equilibrium molecular dynamics study of methane transport in clay nano-pores
inferred← citeshttps://doi.org/10.1016/j.micromeso.2019.06.021openalex-snapshot
Methane transport through hierarchical silica micro-mesoporous materials: From non-equilibrium atomistic simulations to phenomenological correlations
inferred← citeshttps://doi.org/10.1016/j.mineng.2019.106020openalex-snapshot
A review of atomistic simulation methods for surface physical-chemistry phenomena applied to froth flotation
inferred← citeshttps://doi.org/10.1016/j.molimm.2017.11.019openalex-snapshot
Rational selection of immunodominant and preserved epitope Sm043300e from Schistosoma mansoni and design of a chimeric molecule for biotechnological purposes
inferred← citeshttps://doi.org/10.1016/j.molliq.2013.09.015openalex-snapshot
A molecular dynamics study on the effect of thermostat selection on the physical behavior of water molecules inside single walled carbon nanotubes
inferred← citeshttps://doi.org/10.1016/j.molliq.2017.01.101openalex-snapshot
Effect of nonpolar confinement on protein Trp cage conformation in aqueous osmolyte solutions
inferred← citeshttps://doi.org/10.1016/j.molliq.2017.03.030openalex-snapshot
Folding/unfolding of protein Trp cage in aqueous osmolyte solutions under polar confinement
inferred← citeshttps://doi.org/10.1016/j.molliq.2017.12.054openalex-snapshot
The opposing effect of urea and high pressure on the conformation of the protein β-hairpin: A molecular dynamics simulation study
inferred← citeshttps://doi.org/10.1016/j.molliq.2018.04.022openalex-snapshot
Molecular dynamics simulations on homogeneous condensation of R600a refrigerant
inferred← citeshttps://doi.org/10.1016/j.molliq.2019.03.072openalex-snapshot
How does the complexation ability between host endo-functionalized molecular tube and strongly hydrophilic guest molecules in water depend on guest concentration?
inferred← citeshttps://doi.org/10.1016/j.molliq.2019.03.170openalex-snapshot
Quantum structural fluctuations of protonated water clusters (H2O) H+ (n = 1 − 4) studied by variational molecular dynamics method
inferred← citeshttps://doi.org/10.1016/j.molliq.2020.113909openalex-snapshot
Molecular modeling insights in the extraction of benzene from hydrocarbon stream using deep eutectic solvent
inferred← citeshttps://doi.org/10.1016/j.molliq.2021.116338openalex-snapshot
Prediction of local thermodynamics of water in and around endo-functionalized molecular tube receptors: An approach using grid inhomogeneous solvation theory
inferred← citeshttps://doi.org/10.1016/j.molliq.2022.119922openalex-snapshot
Molecular dynamic investigation on the thermophysical properties of binary molten carbonate mixtures
inferred← citeshttps://doi.org/10.1016/j.molliq.2022.119981openalex-snapshot
Combined microwave dielectrometry and molecular dynamic study of aqueous solutions of human serum albumin with additives
inferred← citeshttps://doi.org/10.1016/j.molliq.2023.122028openalex-snapshot
Inhibitory action of indanone-carbamate hybrid molecules on the aggregation of Aβ16−22 peptides and their translocation across POPC lipid bilayer
inferred← citeshttps://doi.org/10.1016/j.molliq.2023.122271openalex-snapshot
Study on the effective methods for breaking hydrated cation bridges between crude oil and quartz
inferred← citeshttps://doi.org/10.1016/j.molliq.2023.123253openalex-snapshot
Microstructure of ionic liquids mixed with water on the charged graphene surface: A coarse-grained molecular dynamics simulation study
inferred← citeshttps://doi.org/10.1016/j.molliq.2023.123936openalex-snapshot
Influence of thermostat on droplet spreading in molecular dynamics simulations
inferred← citeshttps://doi.org/10.1016/j.molliq.2025.128165openalex-snapshot
Saturated vapor pressures, vapor-liquid densities and phase diagram of pure HFO-1132a and HFO-1132a & HFC-134a blends from 240 K to 300 K using MD simulation
inferred← citeshttps://doi.org/10.1016/j.molstruc.2018.12.074openalex-snapshot
Structural and spectroscopic properties of posaconazole – Experimental and theoretical studies
inferred← citeshttps://doi.org/10.1016/j.molstruc.2023.136968openalex-snapshot
Investigating the common pharmacophoric points of PDK1 inhibitors as anti-cancer agents using an alignment independent 3D-QSAR, molecular docking and molecular dynamic simulation
inferred← citeshttps://doi.org/10.1016/j.msea.2014.05.005openalex-snapshot
Atomistic modeling of the crack–void interaction in α-Fe
inferred← citeshttps://doi.org/10.1016/j.mtcomm.2022.103642openalex-snapshot
Molecular Dynamics Simulation of Perforation of Graphene Under Impact by Fullerene Projectiles
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