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Automated molecular design: A new fragment-joining algorithm

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bip.360261207openalex-snapshot
Predicting antibody hypervariable loop conformation. I. Ensembles of random conformations for ringlike structures
inferredcites →https://doi.org/10.1002/jcc.540111012openalex-snapshot
Automated conformational analysis: Directed conformational search using the A* algorithm
inferredcites →https://doi.org/10.1002/jcc.540141008openalex-snapshot
CONCEPTS: New dynamic algorithm for de novo drug suggestion
inferredcites →https://doi.org/10.1002/jcc.540150213openalex-snapshot
A ring‐bracing approach to computer‐assisted ligand design
inferredcites →https://doi.org/10.1002/prot.340010408openalex-snapshot
Predicting antibody hypervariable loop conformations II: Minimization and molecular dynamics studies of MCPC603 from many randomly generated loop conformations
inferredcites →https://doi.org/10.1002/prot.340110104openalex-snapshot
Functionality maps of binding sites: A multiple copy simultaneous search method
inferredcites →https://doi.org/10.1002/prot.340110409openalex-snapshot
Computer design of bioactive molecules: A method for receptor‐based de novo ligand design
inferredcites →https://doi.org/10.1007/bf00125319openalex-snapshot
Automated site-directed drug design: Approaches to the formation of 3D molecular graphs
inferredcites →https://doi.org/10.1007/bf00125322openalex-snapshot
SPLICE: A program to assemble partial query solutions from three-dimensional database searches into novel ligands
inferredcites →https://doi.org/10.1007/bf00126217openalex-snapshot
LUDI: rule-based automatic design of new substituents for enzyme inhibitor leads
inferredcites →https://doi.org/10.1007/bf00126441openalex-snapshot
SPROUT: A program for structure generation
inferredcites →https://doi.org/10.1007/bf00141573openalex-snapshot
GenStar: A method for de novo drug design
inferredcites →https://doi.org/10.1007/bf01590992openalex-snapshot
Constrained search of conformational hyperspace
inferredcites →https://doi.org/10.1007/bf01680558openalex-snapshot
WIZARD: AI in conformational analysis
inferredcites →https://doi.org/10.1016/0022-2836(82)90452-1openalex-snapshot
Crystallographic refinement and atomic models of two different forms of citrate synthase at 2·7 and 1·7 Å resolution
inferredcites →https://doi.org/10.1016/0263-7855(88)80054-7openalex-snapshot
The MIDAS display system
inferredcites →https://doi.org/10.1016/0263-7855(92)80047-hopenalex-snapshot
Automated site-directed drug design: a method for the generation of general three-dimensional molecular graphs
inferredcites →https://doi.org/10.1016/0263-7855(92)80059-mopenalex-snapshot
Automated site-directed drug design using molecular lattices
inferredcites →https://doi.org/10.1016/0266-9838(87)90010-4openalex-snapshot
Cluster analysis for researchers
inferredcites →https://doi.org/10.1021/ja00018a047openalex-snapshot
Toward the semiquantitative estimation of binding constants. Guides for peptide-peptide binding in aqueous solution
inferredcites →https://doi.org/10.1021/jm00064a003openalex-snapshot
GroupBuild: a fragment-based method for de novo drug design
inferredcites →https://doi.org/10.1021/jm00072a011openalex-snapshot
Confirmation of usefulness of a structure construction program based on three-dimensional receptor structure for rational lead generation
inferredcites →https://doi.org/10.1021/jm00090a001openalex-snapshot
3D database searching in drug design
inferredcites →https://doi.org/10.1021/jm00145a002openalex-snapshot
A computational procedure for determining energetically favorable binding sites on biologically important macromolecules
inferredcites →https://doi.org/10.1021/ma00154a069openalex-snapshot
Chain closure with bond angle variations
inferredcites →https://doi.org/10.1021/ma60014a012openalex-snapshot
Ring Closure and Local Conformational Deformations of Chain Molecules
inferredcites →https://doi.org/10.1039/p298700000s1openalex-snapshot
Tables of bond lengths determined by X-ray and neutron diffraction. Part 1. Bond lengths in organic compounds
inferredcites →https://doi.org/10.1098/rspb.1989.0017openalex-snapshot
Automated site-directed drug design: the concept of spacer skeletons for primary structure generation
inferredcites →https://doi.org/10.1098/rspb.1989.0018openalex-snapshot
Automated site-directed drug design : the formation of molecular templates in primary structure generation
inferredcites →https://doi.org/10.1126/science.257.5073.1078openalex-snapshot
Structure-Based Strategies for Drug Design and Discovery
inferredcites →https://doi.org/10.2307/2286880openalex-snapshot
Clustering Algorithms.
inferredcites →https://doi.org/10.2307/3151374openalex-snapshot
Cluster Analysis for Researchers

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/(sici)1097-0134(20000801)40:2<258::aid-prot80>3.0.co;2-iopenalex-snapshot
Dynamic ligand design and combinatorial optimization: Designing inhibitors to endothiapepsin
inferred← citeshttps://doi.org/10.1002/9780470125885.ch2openalex-snapshot
Current Issues in De Novo Molecular Design
inferred← citeshttps://doi.org/10.1002/9783527619368.ch16openalex-snapshot
Docking and Scoring for Structure‐based Drug Design
inferred← citeshttps://doi.org/10.1002/cmdc.200500102openalex-snapshot
FlexNovo : Structure‐Based Searching in Large Fragment Spaces
inferred← citeshttps://doi.org/10.1002/prot.340230403openalex-snapshot
An automated method for dynamic ligand design
inferred← citeshttps://doi.org/10.1007/978-0-387-73715-7_5openalex-snapshot
Computer-Aided Design of Organic Host Architectures for Selective Chemosensors
inferred← citeshttps://doi.org/10.1007/978-3-662-03141-4_10openalex-snapshot
The Role of Structure-Based Ligand Design in Industrial Pharmaceutical Research
inferred← citeshttps://doi.org/10.1007/bf00117275openalex-snapshot
PRO_LIGAND: An approach to de novo molecular design. 1. Application to the design of organic molecules
inferred← citeshttps://doi.org/10.1007/bf00123996openalex-snapshot
PRO_LIGAND: An approach to de novo molecular design. 6. Flexible fitting in the design of peptides
inferred← citeshttps://doi.org/10.1007/bf00124404openalex-snapshot
PRO_LIGAND: An approach to de novo molecular design. 3. A genetic algorithm for structure refinement
inferred← citeshttps://doi.org/10.1007/bf00124453openalex-snapshot
PRO_LIGAND: An approach to de novo molecular design. 4. Application to the design of peptides
inferred← citeshttps://doi.org/10.1007/bf00124457openalex-snapshot
BUILDER v.2: Improving the chemistry of a de novo design strategy
inferred← citeshttps://doi.org/10.1007/bf00125381openalex-snapshot
Current methods for site-directed structure generation
inferred← citeshttps://doi.org/10.1007/bf00579706openalex-snapshot
The role of structure-based ligand design and molecular modelling in drug discovery
inferred← citeshttps://doi.org/10.1007/s10822-007-9157-4openalex-snapshot
The concept of template-based de novo design from drug-derived molecular fragments and its application to TAR RNA
inferred← citeshttps://doi.org/10.1007/s10822-011-9519-9openalex-snapshot
Drug design for ever, from hype to hope
inferred← citeshttps://doi.org/10.1016/0040-4020(95)00467-mopenalex-snapshot
Combinatorial synthesis — the design of compound libraries and their application to drug discovery
inferred← citeshttps://doi.org/10.1016/0301-4622(95)00120-4openalex-snapshot
New approaches in molecular structure prediction
inferred← citeshttps://doi.org/10.1016/b0-08-045044-x/00255-8openalex-snapshot
De Novo Design
inferred← citeshttps://doi.org/10.1016/s1093-3263(00)00062-0openalex-snapshot
Synergy between combinatorial chemistry and de novo design
inferred← citeshttps://doi.org/10.1016/s1460-1567(98)80028-7openalex-snapshot
Chapter 1 Introduction, Basic Concepts and Strategies
inferred← citeshttps://doi.org/10.1021/ci950277wopenalex-snapshot
RASSE: A New Method for Structure-Based Drug Design
inferred← citeshttps://doi.org/10.1021/ic0202920openalex-snapshot
HostDesigner: A Program for the de Novo Structure-Based Design of Molecular Receptors with Binding Sites that Complement Metal Ion Guests
inferred← citeshttps://doi.org/10.1023/a:1008042711516openalex-snapshot
Evaluation of a method for controlling molecular scaffold diversity in de novo ligand design
inferred← citeshttps://doi.org/10.1023/a:1008094712424openalex-snapshot
PRO_SELECT: Combining structure-based drug design and combinatorial chemistry for rapid lead discovery. 1. Technology
inferred← citeshttps://doi.org/10.1039/c0cs00075bopenalex-snapshot
De novo structure-based design of anion receptors
inferred← citeshttps://doi.org/10.1039/c2cc37776dopenalex-snapshot
Structural design principles for self-assembled coordination polygons and polyhedra
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