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Accuracy of estimated phylogenetic trees from molecular data

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Simulation studies on the evolution of amino acid sequences

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Goodman et al.'s method for augmenting the number of nucleotide substitutions

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Structural and Functional Aspects of Cytochrome c in Relation to Evolution

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The Dependence of Immunological Cross-Reactivity upon Sequence Resemblance among Lysozymes

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Phylogenetic analysis: models and estimation procedures

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Amino-Acid Sequence Investigations of Fibrinopeptides from Various Mammals: Evolutionary Implications

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Simple method for constructing phylogenetic trees from distance matrices.

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Genetic Distance between Populations

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Quantitative Immunochemistry and the Evolution of Primate Albumins: Micro-Complement Fixation

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Construction of Phylogenetic Trees

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Non-Darwinian Evolution

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Biochemical Evolution

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A Statistical Method for Evaluating Systematic Relationships

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A Simple Method to Improve the Reliability of Tree Reconstructions

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040059openalex-snapshot

Evolutionary relationships of human populations on a global scale.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040195openalex-snapshot

Neighbor Joining and Maximum Likelihood with RNA Sequences: Addressing the Interdependence of Sites

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040311openalex-snapshot

Concerted evolution of the immunoglobulin VH gene family.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040323openalex-snapshot

Molecular probes of phylogeny and biogeography in toads of the widespread genus Bufo.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040333openalex-snapshot

Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040354openalex-snapshot

Biochemical differentiation in bile duct cestodes and their marsupial hosts.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040407openalex-snapshot

Estimating the reliability of evolutionary trees.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040432openalex-snapshot

Accuracy of phylogenetic trees estimated from DNA sequence data.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040497openalex-snapshot

Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot

Relationships between gene trees and species trees.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040572openalex-snapshot

Relative Efficiencies of the Fitch-Margoliash, Maximum-Parsimony, Maximum-Likelihood, Minimum-Evolution, and Neighbor-joining Methods of Phylogenetic Tree Construction in Obtaining the Correct Tree

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040627openalex-snapshot

A simple graphic method for reconstructing phylogenetic trees from molecular data.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040648openalex-snapshot

Relative efficiencies of the maximum-parsimony and distance-matrix methods of phylogeny construction for restriction data.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040696openalex-snapshot

Use of the Method of Generalized Least Squares in Reconstructing Phylogenies from Sequence Data

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040705openalex-snapshot

Statistical method for estimating the standard errors of branch lengths in a phylogenetic tree reconstructed without assuming equal rates of nucleotide substitution among different lineages.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040740openalex-snapshot

The consistency of several phylogeny-inference methods under varying evolutionary rates.

inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040769openalex-snapshot

Molecular Phylogeny of the Helianthus Genus, Based on Nuclear Restriction-Fragment-Length Polymorphism (RFLP)

inferred← citeshttps://doi.org/10.1093/sysbio/32.2.159openalex-snapshot

A Phylogenetic Analysis of the Caminalcules. I. the Data Base

inferred← citeshttps://doi.org/10.1093/sysbio/32.3.259openalex-snapshot

A Phylogenetic Analysis of the Caminalcules. IV. Congruence and Character Stability

inferred← citeshttps://doi.org/10.1093/sysbio/34.3.312openalex-snapshot

Distance Methods and the Approximation of Most-Parsimonious Trees

inferred← citeshttps://doi.org/10.1093/sysbio/35.1.1openalex-snapshot

An Electrophoretic Analysis of Holarctic Hylid Frog Evolution

inferred← citeshttps://doi.org/10.1093/sysbio/38.1.38openalex-snapshot

Albumin Immunologic Relationships of the Macropodidae (Marsupialia)

inferred← citeshttps://doi.org/10.1093/sysbio/41.2.158openalex-snapshot

A Statistical Framework to Test the Consensus Among Additive Trees (Cladograms)

inferred← citeshttps://doi.org/10.1093/sysbio/42.3.247openalex-snapshot

Success of Phylogenetic Methods in the Four-Taxon Case

inferred← citeshttps://doi.org/10.1093/sysbio/44.1.3openalex-snapshot

Approaches for Assessing Phylogenetic Accuracy

inferred← citeshttps://doi.org/10.1093/sysbio/45.4.516openalex-snapshot

Accuracy of Neighbor Joining for n-Taxon Trees

inferred← citeshttps://doi.org/10.1093/sysbio/syx063openalex-snapshot

Why Concatenation Fails Near the Anomaly Zone

inferred← citeshttps://doi.org/10.1109/bmei.2011.6098605openalex-snapshot

Two new distance based methods for phylogenetic tree reconstruction

inferred← citeshttps://doi.org/10.1109/iccsnt.2015.7490895openalex-snapshot

Network protocol security testing based on fuzz

inferred← citeshttps://doi.org/10.1109/itoec49072.2020.9141935openalex-snapshot

Anomaly detection based on feature extraction of unknown protocol payload format

inferred← citeshttps://doi.org/10.1111/ajgw.12221openalex-snapshot

Composition ofSaccharomyces cerevisiaestrains in spontaneous fermentations of Pinot Noir and Chardonnay

inferred← citeshttps://doi.org/10.1111/j.0014-3820.2004.tb01655.xopenalex-snapshot

BIRDS IN A BUSH: FIVE GENES INDICATE EXPLOSIVE EVOLUTION OF AVIAN ORDERS

inferred← citeshttps://doi.org/10.1111/j.1095-8312.1988.tb01967.xopenalex-snapshot

Microevolution in Solatopupa landsnails (Pulmonata Chondrinidae): genetic diversity and founder effects

inferred← citeshttps://doi.org/10.1111/j.1095-8312.1994.tb00962.xopenalex-snapshot

Rooting molecular trees: problems and strategies

inferred← citeshttps://doi.org/10.1111/j.1096-0031.1985.tb00427.xopenalex-snapshot

TESTING METHODS OF EVOLUTIONARY TREE CONSTRUCTION

inferred← citeshttps://doi.org/10.1111/j.1439-0388.1995.tb00566.xopenalex-snapshot

Untersuchungen zur genetischen Struktur der wichtigsten Schafrassen Griechenlands1

inferred← citeshttps://doi.org/10.1111/j.1439-0469.1986.tb00612.xopenalex-snapshot

Zur molekularen Taxonomie und Evolution der Anatidae

inferred← citeshttps://doi.org/10.1111/j.1439-0469.1988.tb00327.xopenalex-snapshot

GENESIS: a simulation model of phylogeny. 1. The origin and early evolution of character state vectors.-GENESIS: Ein Simulationsmodell der Phylogenie. 1. Die Ausgangssituation und die frühe Evolution der Zustandsvektoren der Merkmale

inferred← citeshttps://doi.org/10.1111/j.1439-0469.1996.tb00807.xopenalex-snapshot

Identification of apomorphies and the role of groundpatterns in molecular systematics

inferred← citeshttps://doi.org/10.1111/j.1463-6409.2005.00209.xopenalex-snapshot

Morphology, molecules, and character congruence in the phylogeny of South American geophagine cichlids (Perciformes, Labroidei)

inferred← citeshttps://doi.org/10.1111/j.1469-7998.1999.tb00766.xopenalex-snapshot

Phylogenetic and taxonomical relationships of the eight species in the melanogaster subgroup of the genus Drosophila (Sophophora) based on the electrophoretic mobility of the major chorion proteins and the eggshell ultrastructure

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1984.tb00255.xopenalex-snapshot

DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1985.tb00398.xopenalex-snapshot

FACTORS DETERMINING THE ACCURACY OF CLADOGRAM ESTIMATION: EVALUATION USING COMPUTER SIMULATION

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1988.tb04162.xopenalex-snapshot

EVALUATION OF THE RESTRICTED MAXIMUM‐LIKELIHOOD METHOD FOR ESTIMATING PHYLOGENETIC TREES USING SIMULATED ALLELE‐FREQUENCY DATA

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1989.tb02568.xopenalex-snapshot

GENE TREES AND ORGANISMAL HISTORIES: A PHYLOGENETIC APPROACH TO POPULATION BIOLOGY

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1989.tb04203.xopenalex-snapshot

PHYLOGENETIC HYPOTHESES UNDER THE ASSUMPTION OF NEUTRAL QUANTITATIVE‐GENETIC VARIATION

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1990.tb03855.xopenalex-snapshot

ACCURACY OF ESTIMATED PHYLOGENIES: EFFECTS OF TREE TOPOLOGY AND EVOLUTIONARY MODEL

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1992.tb02072.xopenalex-snapshot

PHYLOGENETIC ESTIMATION OF PLASMID EXCHANGE IN BACTERIA

inferred← citeshttps://doi.org/10.1111/j.1558-5646.1993.tb02107.xopenalex-snapshot

THE ACCURACY OF PHYLOGENETIC ESTIMATION USING THE NEIGHBOR‐JOINING METHOD

inferred← citeshttps://doi.org/10.1111/jbi.14342openalex-snapshot

Multiple colonizations and genetic differentiation in goldenrod populations on recently formed nearshore islands

inferred← citeshttps://doi.org/10.1111/jse.12820openalex-snapshot

Fragmented habitats and Pleistocene climate shaped diversification of the hoary bamboo rat (Rhizomys pruinosus) in the mountainous plateau of SW China

inferred← citeshttps://doi.org/10.1111/jzs.12262openalex-snapshot

Higher‐level phylogenetic affinities of the Neotropical genusMastigodryasAmaral, 1934 (Serpentes: Colubridae), species‐group definition and description of a new genus forMastigodryas bifossatus

inferred← citeshttps://doi.org/10.1111/mec.13306openalex-snapshot

Host behaviour drives parasite genetics at multiple geographic scales: population genetics of the chewing louse,Thomomydoecus minor

inferred← citeshttps://doi.org/10.1128/jb.184.17.4891-4905.2002openalex-snapshot

Imbroglios of Viral Taxonomy: Genetic Exchange and Failings of Phenetic Approaches

inferred← citeshttps://doi.org/10.1134/s2079086419040042openalex-snapshot

Estimates of Genetic Introgression, Gene Tree Reticulation, Taxon Divergence, and Sustainability of DNA Barcoding Based on Genetic Molecular Markers

inferred← citeshttps://doi.org/10.1139/b95-125openalex-snapshot

Congruence of chloroplast DNA restriction site characters with morphological and isozyme data in Solanum sect. Lasiocarpa

inferred← citeshttps://doi.org/10.1145/167088.167132openalex-snapshot

A robust model for finding optimal evolutionary trees

inferred← citeshttps://doi.org/10.1146/annurev.an.20.100191.000525openalex-snapshot

Recent Developments In Population Genetics

inferred← citeshttps://doi.org/10.1146/annurev.es.15.110184.002441openalex-snapshot

The Application of Electrophoretic Data in Systematic Studies

inferred← citeshttps://doi.org/10.1146/annurev.genet.30.1.371openalex-snapshot

PHYLOGENETIC ANALYSIS IN MOLECULAR EVOLUTIONARY GENETICS

inferred← citeshttps://doi.org/10.1146/annurev.genom.9.081307.164407openalex-snapshot

Phylogenetic Inference Using Whole Genomes

inferred← citeshttps://doi.org/10.1155/2005/625182openalex-snapshot

Genetic Variability of Apolipoprotein E in Different Populations from Venezuela

inferred← citeshttps://doi.org/10.11606/t.11.2012.tde-30052012-095635openalex-snapshot

Diversidade genética em germoplasma de arroz japonês utilizando marcadores moleculares e agromorfológicos

inferred← citeshttps://doi.org/10.11606/t.11.2014.tde-11112014-145926openalex-snapshot

Diversidade genética e mapeamento associativo de caracteres associados à tolerância do arroz ao déficit hídrico

inferred← citeshttps://doi.org/10.11606/t.11.2014.tde-12082014-105840openalex-snapshot

Estrutura genética e fluxo gênico em populações naturais de tucumã-do-Amazonas por meio de microssatélites visando o manejo e conservação da espécie

inferred← citeshttps://doi.org/10.1163/156853887x00153openalex-snapshot

Molecular Relationships among Iberian, Moroccan, and South African Lacertid Lizards (Reptilia: Lacertidae)

inferred← citeshttps://doi.org/10.1186/1297-9686-33-4-433openalex-snapshot

Genetic diversity in Spanish donkey breeds using microsatellite DNA markers

inferred← citeshttps://doi.org/10.1186/1297-9686-34-4-481openalex-snapshot

Measuring genetic distances between breeds: use of some distances in various short term evolution models

inferred← citeshttps://doi.org/10.1186/1297-9686-40-1-103openalex-snapshot

Biodiversity of pig breeds from China and Europe estimated from pooled DNA samples: differences in microsatellite variation between two areas of domestication

inferred← citeshttps://doi.org/10.1186/1297-9686-40-3-321openalex-snapshot

Genetic differentiation between the Old and New types of Serbian Tsigai sheep

inferred← citeshttps://doi.org/10.1186/1297-9686-40-6-681openalex-snapshot

Genetic variation in eight Chinese cattle breeds based on the analysis of microsatellite markers

inferred← citeshttps://doi.org/10.1186/1471-2148-10-121openalex-snapshot

Cryptic diversity of the bent-wing bat, Miniopterus schreibersii (Chiroptera: Vespertilionidae), in Asia Minor

inferred← citeshttps://doi.org/10.1186/1471-2156-15-70openalex-snapshot

Evidence of weak genetic structure and recent gene flow between Bactrocera dorsalis s.s. and B. papayae, across Southern Thailand and West Malaysia, supporting a single target pest for SIT applications

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