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Unbiased estimation of the rates of synonymous and nonsynonymous substitution

https://doi.org/10.1007/bf02407308
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00171816openalex-snapshot
The molecular clock ticks regularly in muroid rodents and hamsters
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/bf01732067openalex-snapshot
Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040003openalex-snapshot
Evolution of the Zfx and Zfy genes: rates and interdependence between the genes.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040343openalex-snapshot
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040410openalex-snapshot
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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References
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Synonymous and Nonsynonymous Rates
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Pseudogenes: Age
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inferred← citeshttps://doi.org/10.1007/s00239-004-0223-4openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-004-0290-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-005-0045-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-005-0233-xopenalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-005-0273-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s00239-006-0207-7openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s002390010074openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s002390010085openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s002390010088openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s002390010155openalex-snapshot
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Fluctuating Mutation Bias and the Evolution of Base Composition in Drosophila
inferred← citeshttps://doi.org/10.1007/s002399910004openalex-snapshot
Expression of the Dentin Matrix Protein 1 Gene in Birds
inferred← citeshttps://doi.org/10.1007/s002399910007openalex-snapshot
Rates of Conservative and Radical Nonsynonymous Nucleotide Substitutions in Mammalian Nuclear Genes
inferred← citeshttps://doi.org/10.1007/s002399910009openalex-snapshot
Intron Conservation in a UV-Specific DNA Repair Gene Encoded by Chlorella Viruses
inferred← citeshttps://doi.org/10.1007/s002399910015openalex-snapshot
The Codon-Degeneracy Model of Molecular Evolution
inferred← citeshttps://doi.org/10.1007/s00248-006-9194-xopenalex-snapshot
Molecular Evidence for Polyphyletic Origin of the Primary Symbionts of Sucking Lice (Phthiraptera, Anoplura)
inferred← citeshttps://doi.org/10.1007/s00251-004-0652-7openalex-snapshot
Allelic polymorphism of T-cell receptor constant domains is widespread in fishes
inferred← citeshttps://doi.org/10.1007/s00251-011-0553-5openalex-snapshot
Paired opposing leukocyte receptors recognizing rapidly evolving ligands are subject to homogenization of their ligand binding domains
inferred← citeshttps://doi.org/10.1007/s00251-011-0554-4openalex-snapshot
Evolution of the IL17 receptor family in chordates: a new subfamily IL17REL
inferred← citeshttps://doi.org/10.1007/s002510050028openalex-snapshot
Convergent evolution of major histocompatibility complex molecules in humans and New World monkeys
inferred← citeshttps://doi.org/10.1007/s002510050521openalex-snapshot
Conservation of 3′ untranslated region elements in tammar wallaby ( Macropus eugenii ) TNF-α mRNA
inferred← citeshttps://doi.org/10.1007/s002849900447openalex-snapshot
Vacuolating Cytotoxin ( vacA ) Alleles of Helicobacter pylori Comprise Two Geographically Widespread Types, m1 and m2, and Have Evolved Through Limited Recombination
inferred← citeshttps://doi.org/10.1007/s00294-008-0201-2openalex-snapshot
The evolution of 5S ribosomal RNA genes linked to the rDNA units of fungal species
inferred← citeshttps://doi.org/10.1007/s00335-002-3068-4openalex-snapshot
Usp9y (ubiquitin-specific protease 9 gene on the Y) is associated with a functional promoter and encodes an intact open reading frame homologous to Usp9x that is under selective constraint
inferred← citeshttps://doi.org/10.1007/s00335-009-9175-8openalex-snapshot
Two novel mouse genes mapped to chromosome Yp are expressed specifically in spermatids
inferred← citeshttps://doi.org/10.1007/s003359900372openalex-snapshot
Analysis of mutation rates in the SMCY/SMCX genes shows that mammalian evolution is male driven
inferred← citeshttps://doi.org/10.1007/s003359900671openalex-snapshot
The genetic origin of mouse annexin VIII
inferred← citeshttps://doi.org/10.1007/s004270100153openalex-snapshot
Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals
inferred← citeshttps://doi.org/10.1007/s00439-003-1028-zopenalex-snapshot
Molecular and evolutionary analysis of the growth-controlling region on the human Y chromosome
inferred← citeshttps://doi.org/10.1007/s00439-016-1644-zopenalex-snapshot
Adaptive evolution of interleukin-3 (IL3), a gene associated with brain volume variation in general human populations
inferred← citeshttps://doi.org/10.1007/s00705-002-0954-8openalex-snapshot
Phylogenetic analysis of Vietnamese isolates of feline immunodeficiency virus: genetic diversity of subtype C
inferred← citeshttps://doi.org/10.1007/s00705-006-0834-8openalex-snapshot
The variable codons of H3 influenza A virus haemagglutinin genes
inferred← citeshttps://doi.org/10.1007/s00705-011-0990-3openalex-snapshot
Genetic variation and evolutionary analysis of broad bean wilt virus 2
inferred← citeshttps://doi.org/10.1007/s00705-011-1061-5openalex-snapshot
Recombinational histories of avian infectious bronchitis virus and turkey coronavirus
inferred← citeshttps://doi.org/10.1007/s00705-013-1766-8openalex-snapshot
Genetic structure of rice black-streaked dwarf virus populations in China
inferred← citeshttps://doi.org/10.1007/s00705-013-1868-3openalex-snapshot
Genetic variability and evolution of broad bean wilt virus 1: role of recombination, selection and gene flow
inferred← citeshttps://doi.org/10.1007/s00705-014-2291-0openalex-snapshot
Phylogenetic and recombination analysis of rice black-streaked dwarf virus segment 9 in China
inferred← citeshttps://doi.org/10.1007/s00705-016-3052-zopenalex-snapshot
Molecular variation and expansion of a rice black-streaked dwarf virus population based on analysis of segment 1 in Jining, China
inferred← citeshttps://doi.org/10.1007/s00705-020-04721-4openalex-snapshot
Genetic variability of grapevine fabavirus variants and development of a broad-spectrum assay for their detection
inferred← citeshttps://doi.org/10.1007/s007050050607openalex-snapshot
Genome evolution of tobacco mosaic virus populations during long-term passaging in a diverse range of hosts
inferred← citeshttps://doi.org/10.1007/s00792-008-0141-2openalex-snapshot
Reductive genome evolution in chemoautotrophic intracellular symbionts of deep-sea Calyptogena clams
inferred← citeshttps://doi.org/10.1007/s10126-004-4095-9openalex-snapshot
Molecular biomarkers and adaptation to environmental stress in moon jelly (Aurelia spp.)
inferred← citeshttps://doi.org/10.1007/s10142-023-01177-yopenalex-snapshot
Identification and characterization of RuvBL DNA helicase genes for tolerance against abiotic stresses in bread wheat (Triticum aestivum L.) and related species
inferred← citeshttps://doi.org/10.1007/s10483-015-1940-6openalex-snapshot
Yeast protein-protein interaction network model based on biological experimental data
inferred← citeshttps://doi.org/10.1007/s10528-011-9473-1openalex-snapshot
Comparative Genetics of the Poly-Q Tract of Ataxin-1 and Its Binding Protein PQBP-1
inferred← citeshttps://doi.org/10.1007/s10658-015-0669-9openalex-snapshot
Genetic structure and diversity of the Banana bunchy top virus population on Sumatra Island, Indonesia
inferred← citeshttps://doi.org/10.1007/s10658-015-0683-yopenalex-snapshot
Erratum to: Genetic structure and diversity of the Banana bunchy top virus population on Sumatra Island, Indonesia
inferred← citeshttps://doi.org/10.1007/s10658-015-0755-zopenalex-snapshot
Population genetics analysis of East Asian Passiflora virus on Amami Oshima Island
inferred← citeshttps://doi.org/10.1007/s10658-016-1060-1openalex-snapshot
Occurrence of viruses infecting melon in Xinjiang of China and molecular characterization of Watermelon mosaic virus isolates
inferred← citeshttps://doi.org/10.1007/s10709-006-7668-xopenalex-snapshot
Molecular evolution and functional specialization of chalcone synthase superfamily from Phalaenopsis Orchid
inferred← citeshttps://doi.org/10.1007/s10709-014-9775-4openalex-snapshot
Molecular population genetics of the NADPH cytochrome P450 reductase (CPR) gene in Anopheles minimus
inferred← citeshttps://doi.org/10.1007/s10709-021-00132-8openalex-snapshot
Comparative mitogenomics of Drosophilidae and the evolution of the Zygothrica genus group (Diptera, Drosophilidae)
inferred← citeshttps://doi.org/10.1007/s10764-005-5327-0openalex-snapshot
Biogeography of Dwarf Lemurs: Genetic Evidence for Unexpected Patterns in Southeastern Madagascar
inferred← citeshttps://doi.org/10.1007/s10863-005-4121-2openalex-snapshot
Rapid Nonsynonymous Evolution of the Iron-Sulfur Protein in Anthropoid Primates
inferred← citeshttps://doi.org/10.1007/s11033-015-3853-2openalex-snapshot
Genome-wide identification and expression profiling of the late embryogenesis abundant genes in potato with emphasis on dehydrins
inferred← citeshttps://doi.org/10.1007/s11103-005-4414-1openalex-snapshot
Molecular Evidence for Asymmetric Evolution of Sister Duplicated Blocks after Cereal Polyploidy
inferred← citeshttps://doi.org/10.1007/s11103-006-0012-0openalex-snapshot
Cloning, Functional Identification and Sequence Analysis of Flavonoid 3′-hydroxylase and Flavonoid 3′,5′-hydroxylase cDNAs Reveals Independent Evolution of Flavonoid 3′,5′-hydroxylase in the Asteraceae Family
inferred← citeshttps://doi.org/10.1007/s11103-022-01309-1openalex-snapshot
Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels
inferred← citeshttps://doi.org/10.1007/s11120-022-00917-8openalex-snapshot
Genes encoding the photosystem II proteins are under purifying selection: an insight into the early evolution of oxygenic photosynthesis
inferred← citeshttps://doi.org/10.1007/s11262-005-6866-4openalex-snapshot
Variations in Two Gene Sequences of Citrus Tristeza Virus after Host Passage
inferred← citeshttps://doi.org/10.1007/s11262-006-0026-3openalex-snapshot
Low genetic diversity among Cucumber vein yellowing virus isolates from Spain
inferred← citeshttps://doi.org/10.1007/s11262-007-0169-xopenalex-snapshot
Population structure of Citrus tristeza virus from field Argentinean isolates
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