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Pattern recognition in genetic sequences by mismatch density

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/0022-2836(70)90057-4openalex-snapshot

A general method applicable to the search for similarities in the amino acid sequence of two proteins

inferredcites →https://doi.org/10.1016/0022-2836(81)90087-5openalex-snapshot

Identification of common molecular subsequences

inferredcites →https://doi.org/10.1016/0097-3165(74)90050-8openalex-snapshot

An algorithm for the distance between two finite sequences

inferredcites →https://doi.org/10.1016/0196-6774(80)90016-4openalex-snapshot

The theory and computation of evolutionary distances: Pattern recognition

inferredcites →https://doi.org/10.1093/nar/10.1.247openalex-snapshot

Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries

inferredcites →https://doi.org/10.1137/0126070openalex-snapshot

On the Theory and Computation of Evolutionary Distances

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Generalized affine gap costs for protein sequence alignment

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Basic Local Alignment Search Tool

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Disjoint Segments with Maximum Density

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Fast Algorithms for Finding Maximum-Density Segments of a Sequence with Applications to Bioinformatics

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Learning Significant Alignments: An Alternative to Normalized Local Alignment

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Approximate Periods of Strings

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Approximate string matching and local similarity

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Sequence-Specific Sequence Comparison Using Pairwise Statistical Significance

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Pattern Recognition in Genomic and Protein Sequences: A Survey of Statistical Validation Problems

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Evaluating the Statistical Significance of Multiple Distinct Local Alignments

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An Optimal Algorithm for the Maximum-Density Segment Problem

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Efficiency and Scalability Issues in Metric Access Methods

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Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences

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Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition

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Agent-Supported Protein Structure Similarity Searching

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A Brief Review of Protein Sequence Pattern Matching

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A protein alignment scoring system sensitive at all evolutionary distances

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Linear-space algorithms that build local alignments from fragments

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Approximate matching of regular expressions

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Significance levels for biological sequence comparison using non-linear similarity functions

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Sequence similarity (‘Homology’) searching for molecular biologists

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A nonlinear measure of subalignment similarity and its significance levels

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Locally optimal subalignments using nonlinear similarity functions

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Reporting exact and approximate regular expression matches

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A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons

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Amino acid substitution matrices from an information theoretic perspective

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[27] Dynamic programming algorithms for biological sequence comparison

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A time-efficient, linear-space local similarity algorithm

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A bibliography on computational molecular biology and genetics

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Linear-time algorithms for computing maximum-density sequence segments with bioinformatics applications

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Efficient algorithms for locating the length-constrained heaviest segments with applications to biomolecular sequence analysis

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[52] Computer analysis of nucleic acid sequences

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[27] Local alignment statistics

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Approximate periods of strings

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Block edit models for approximate string matching

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Issues in searching molecular sequence databases

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Sequence Alignment in Molecular Biology

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Primary Structural Repeats in Human and in Murine γ-Interferon

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Evaluation of Inter- and Intramolecular Primary Structure Homologies of Interferons by a Monte Carlo Method

inferred← citeshttps://doi.org/10.1090/dimacs/047/05openalex-snapshot

Sequence alignment in molecular biology

inferred← citeshttps://doi.org/10.1093/bioinformatics/15.12.1012openalex-snapshot

Post-processing long pairwise alignments

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A new approach to sequence comparison: normalized sequence alignment

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Early bioinformatics: the birth of a discipline—a personal view

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ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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The estimation of statistical parameters for local alignment score distributions

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Significance of nucleotide sequence alignments: a method for random sequence permutation that preserves dinucleotide and codon usage.

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A new heuristic for multiple sequence alignment

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DNAlignTT: Pairwise DNA alignment with sequence specific transition-transversion ratio

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An optimal alignment of proteins energy characteristics with crisp and fuzzy similarity awards

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Pairwise DNA Alignment with Sequence Specific Transition-Transversion Ratio Using Multiple Parameter Sets

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Pairwise Statistical Significance of Local Sequence Alignment Using Substitution Matrices with Sequence-Pair-Specific Distance

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Pairwise Statistical Significance of Local Sequence Alignment Using Sequence-Specific and Position-Specific Substitution Matrices

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Differential Regulation of Trypsinogen mRNA Translation: Full-Length mRNA Sequences Encoding Two Oppositely Charged Trypsinogen Isoenzymes in the Dog Pancreas

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Trees, Stars, and Multiple Biological Sequence Alignment

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An Optimal Algorithm for the Maximum-Density Segment Problem

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Pairwise statistical significance of local sequence alignment using multiple parameter sets

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A new approach to sequence comparison

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Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty

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Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail

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Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints

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The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment

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Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment

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An enhanced algorithm for multiple sequence alignment of protein sequences using genetic algorithm

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Efficient homology search for genomic sequence databases

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Sequence-specific sequence comparison using pairwise statistical significance

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Category Theory for Genetics

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Meta-alignment of biological sequences

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