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Line geometries for sequence comparisons
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/0001-8708(76)90202-4openalex-snapshot
Some biological sequence metrics
inferredcites →https://doi.org/10.1016/b978-0-12-775950-0.50007-8openalex-snapshot
Some Combinatorial Problems Studied Experimentally on Computing Machines
inferredcites →https://doi.org/10.1016/c2013-0-11736-9openalex-snapshot
Applications of Number Theory to Numerical Analysis
inferredcites →https://doi.org/10.1073/pnas.69.1.4openalex-snapshot
Matching Sequences under Deletion/Insertion Constraints
inferredcites →https://doi.org/10.1093/sysbio/20.4.406openalex-snapshot
Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
inferredcites →https://doi.org/10.1121/1.383693openalex-snapshot
Considerations in applying clustering techniques to speaker-independent word recognition
inferredcites →https://doi.org/10.1121/1.385120openalex-snapshot
A simplified, robust training procedure for speaker trained, isolated word recognition systems
inferredcites →https://doi.org/10.1128/mmbr.47.4.621-669.1983openalex-snapshot
Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids
inferredcites →https://doi.org/10.1137/0126070openalex-snapshot
On the Theory and Computation of Evolutionary Distances
inferredcites →https://doi.org/10.1145/321796.321811openalex-snapshot
The String-to-String Correction Problem
inferredcites →https://doi.org/10.2307/2412116openalex-snapshot
Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/(sici)1097-0134(19980701)32:1<88::aid-prot10>3.0.co;2-jopenalex-snapshot
Generalized affine gap costs for protein sequence alignment
inferred← citeshttps://doi.org/10.1002/prot.340090304openalex-snapshot
A workbench for multiple alignment construction and analysis
inferred← citeshttps://doi.org/10.1006/jagm.1997.0882openalex-snapshot
Improved Approximation Algorithms for Tree Alignment
inferred← citeshttps://doi.org/10.1006/jcss.2002.1823openalex-snapshot
Finding Similar Regions in Many Sequences
inferred← citeshttps://doi.org/10.1006/jmbi.1994.1104openalex-snapshot
Hidden Markov Models in Computational Biology
inferred← citeshttps://doi.org/10.1006/jmbi.1996.0679openalex-snapshot
Significant Improvement in Accuracy of Multiple Protein Sequence Alignments by Iterative Refinement as Assessed by Reference to Structural Alignments
inferred← citeshttps://doi.org/10.1006/mgme.1997.2652openalex-snapshot
The Fanconi Anemia Complementation Group A Protein Contains a Peroxidase Domain
inferred← citeshttps://doi.org/10.1007/3-540-56024-6_17openalex-snapshot
Multiple alignment with guaranteed error bounds and communication cost
inferred← citeshttps://doi.org/10.1007/3-540-60044-2_52openalex-snapshot
Approximation algorithms for multiple sequence alignment under a fixed evolutionary tree
inferred← citeshttps://doi.org/10.1007/3-540-61258-0_17openalex-snapshot
Improved approximation algorithms for tree alignment
inferred← citeshttps://doi.org/10.1007/978-0-387-09770-1_9openalex-snapshot
Algorithms for Genomics Analysis
inferred← citeshttps://doi.org/10.1007/978-0-387-74759-0_9openalex-snapshot
Algorithms for Genomic Analysis
inferred← citeshttps://doi.org/10.1007/978-1-4757-3171-2_4openalex-snapshot
Computing Shortest Networks with Fixed Topologies
inferred← citeshttps://doi.org/10.1007/978-1-4939-2864-4_73openalex-snapshot
Closest String and Substring Problems
inferred← citeshttps://doi.org/10.1007/978-3-030-02634-9_7openalex-snapshot
Tools and Methods in the Analysis of Simple Sequences
inferred← citeshttps://doi.org/10.1007/bf01955679openalex-snapshot
Approximation algorithms for tree alignment with a given phylogeny
inferred← citeshttps://doi.org/10.1007/bf02143508openalex-snapshot
A flexible method to align large numbers of biological sequences
inferred← citeshttps://doi.org/10.1007/bf02458577openalex-snapshot
Optimal sequence alignment allowing for long gaps
inferred← citeshttps://doi.org/10.1007/bf02459635openalex-snapshot
A survey of multiple sequence comparison methods
inferred← citeshttps://doi.org/10.1007/bf02460892openalex-snapshot
A multiple sequence comparison method
inferred← citeshttps://doi.org/10.1007/bf02462264openalex-snapshot
Consistency of optimal sequence alignments
inferred← citeshttps://doi.org/10.1016/0022-2836(89)90234-9openalex-snapshot
Weights for data related by a tree
inferred← citeshttps://doi.org/10.1016/0378-1119(96)00123-0openalex-snapshot
A general method for fast multiple sequence alignment
inferred← citeshttps://doi.org/10.1016/0895-7177(92)90166-iopenalex-snapshot
A bibliography on computational molecular biology and genetics
inferred← citeshttps://doi.org/10.1016/b978-044488002-4/50041-5openalex-snapshot
10.1016/b978-044488002-4/50041-5
inferred← citeshttps://doi.org/10.1016/j.jalgor.2004.04.008openalex-snapshot
Inverse parametric sequence alignment
inferred← citeshttps://doi.org/10.1016/s0022-5193(86)80112-6openalex-snapshot
Alignment of three biological sequences with an efficient traceback procedure
inferred← citeshttps://doi.org/10.1016/s0065-227x(99)80007-0openalex-snapshot
Multiple sequence alignment: Algorithms and applications
inferred← citeshttps://doi.org/10.1016/s0065-3233(00)54006-6openalex-snapshot
Identifying nature's protein lego set
inferred← citeshttps://doi.org/10.1016/s0166-218x(98)00079-1openalex-snapshot
Approximation algorithms for multiple sequence alignment under a fixed evolutionary tree
inferred← citeshttps://doi.org/10.1073/pnas.0409240102openalex-snapshot
An Eulerian path approach to local multiple alignment for DNA sequences
inferred← citeshttps://doi.org/10.1089/106652703322756096openalex-snapshot
An Eulerian Path Approach to Global Multiple Alignment for DNA Sequences
inferred← citeshttps://doi.org/10.1089/cmb.1994.1.93openalex-snapshot
Approximations to Profile Score Distributions
inferred← citeshttps://doi.org/10.1089/cmb.1995.2.125openalex-snapshot
Algorithms for Protein Structural Motif Recognition
inferred← citeshttps://doi.org/10.1089/cmb.1996.3.563openalex-snapshot
Progressive Multiple Alignment with Constraints
inferred← citeshttps://doi.org/10.1089/cmb.1997.4.23openalex-snapshot
Towards Integration of Multiple Alignment and Phylogenetic Tree Construction
inferred← citeshttps://doi.org/10.1089/cmb.1997.4.369openalex-snapshot
ReAligner: A Program for Refining DNA Sequence Multi-Alignments
inferred← citeshttps://doi.org/10.1089/cmb.1998.5.57openalex-snapshot
Statistical Modelling and Phylogenetic Analysis of a Deaminase Domain
inferred← citeshttps://doi.org/10.1089/cmb.2022.29066.ppopenalex-snapshot
Michael Waterman's Contributions to Computational Biology and Bioinformatics
inferred← citeshttps://doi.org/10.1093/bib/6.1.6openalex-snapshot
The many faces of sequence alignment
inferred← citeshttps://doi.org/10.1093/bioinformatics/10.4.419openalex-snapshot
Multiple sequence alignment using simulated annealing
inferred← citeshttps://doi.org/10.1093/bioinformatics/11.5.543openalex-snapshot
A weighting system and aigorithm for aligning many phylogenetically related sequences
inferred← citeshttps://doi.org/10.1093/bioinformatics/12.4.327openalex-snapshot
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology
inferred← citeshttps://doi.org/10.1093/bioinformatics/12.5.383openalex-snapshot
Applicability of the multiple alignment algorithm for detection of weak patterns: periodically distributed DNA pattern as a study case
inferred← citeshttps://doi.org/10.1093/bioinformatics/13.2.115openalex-snapshot
A bank of protein family patterns for rapid identification of possible functions of amino acid sequences
inferred← citeshttps://doi.org/10.1093/bioinformatics/16.2.79openalex-snapshot
The complexities of genome analysis, the Retroid agent perspective
inferred← citeshttps://doi.org/10.1093/bioinformatics/9.3.361openalex-snapshot
Optimal alignment between groups of sequences and its application to multiple sequence alignment
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040138openalex-snapshot
Comparative analysis of multiple protein-sequence alignment methods.
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040654openalex-snapshot
The order of sequence alignment can bias the selection of tree topology.
inferred← citeshttps://doi.org/10.1101/gr.076554.108openalex-snapshot
Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
inferred← citeshttps://doi.org/10.1101/pdb.top43openalex-snapshot
Using Progressive Methods for Global Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1109/hicss.1993.270611openalex-snapshot
Protein modeling using hidden Markov models: analysis of globins
inferred← citeshttps://doi.org/10.1109/spire.1999.796584openalex-snapshot
Near optimal multiple sequence alignments using a traveling salesman problem approach
inferred← citeshttps://doi.org/10.1126/science.8211139openalex-snapshot
Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment
inferred← citeshttps://doi.org/10.1137/0152101openalex-snapshot
Multiple Alignment, Communication Cost, and Graph Matching
inferred← citeshttps://doi.org/10.1137/s0097539796313507openalex-snapshot
A More Efficient Approximation Scheme for Tree Alignment
inferred← citeshttps://doi.org/10.1145/195058.195454openalex-snapshot
Aligning sequences via an evolutionary tree
inferred← citeshttps://doi.org/10.1145/267460.267486openalex-snapshot
A brief look at some machine learning problems in genomics
inferred← citeshttps://doi.org/10.1145/267521.267758openalex-snapshot
Progressive multiple alignment with constraints
inferred← citeshttps://doi.org/10.1145/267521.267890openalex-snapshot
A more efficient approximation scheme for tree alignment
inferred← citeshttps://doi.org/10.1145/506147.506150openalex-snapshot
On the closest string and substring problems
inferred← citeshttps://doi.org/10.1186/1471-2105-12-144openalex-snapshot
Meta-Alignment with Crumble and Prune: Partitioning very large alignment problems for performance and parallelization
inferred← citeshttps://doi.org/10.1186/s12859-015-0688-8openalex-snapshot
Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix
inferred← citeshttps://doi.org/10.18419/opus-3164openalex-snapshot
Similarity recognition for OWL-based action recipes in RoboEarth
inferred← citeshttps://doi.org/10.2174/1389202033350038openalex-snapshot
Review of Common Sequence Alignment Methods: Clues to Enhance Reliability
inferred← citeshttps://doi.org/10.5555/313651.313664openalex-snapshot
Improved algorithms for protein motif recognition
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