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Dynamical behaviour of biological regulatory networks—I. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Kinetic Logic A Boolean Approach to the Analysis of Complex Regulatory Systems
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Logical identification of all steady states: The concept of feedback loop characteristic states
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Boolean formalization of genetic control circuits
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On the modelling and analysis of the regulatory network of dengue virus pathogenesis and clearance
inferred← citeshttps://doi.org/10.1016/j.compchemeng.2004.08.026openalex-snapshot
A theoretical framework for detecting signal transfer routes in signalling networks
inferred← citeshttps://doi.org/10.1016/j.dam.2009.06.017openalex-snapshot
Positive circuits and maximal number of fixed points in discrete dynamical systems
inferred← citeshttps://doi.org/10.1016/j.dam.2012.05.010openalex-snapshot
Relations between gene regulatory networks and cell dynamics in Boolean models
inferred← citeshttps://doi.org/10.1016/j.drudis.2019.12.009openalex-snapshot
Multiscale modelling of drug mechanism and safety
inferred← citeshttps://doi.org/10.1016/j.dss.2010.04.007openalex-snapshot
Dynamic interaction in knowledge based systems: An exploratory investigation and empirical evaluation
inferred← citeshttps://doi.org/10.1016/j.entcs.2012.05.012openalex-snapshot
Control Flow Analysis of Generalised Boolean Networks
inferred← citeshttps://doi.org/10.1016/j.isci.2023.106843openalex-snapshot
Periodically disturbing biofilms reduces expression of quorum sensing-regulated virulence factors in Pseudomonas aeruginosa
inferred← citeshttps://doi.org/10.1016/j.jbi.2011.02.002openalex-snapshot
Inferring cell cycle feedback regulation from gene expression data
inferred← citeshttps://doi.org/10.1016/j.jbi.2011.11.016openalex-snapshot
Oscillabolastic model, a new model for oscillatory dynamics, applied to the analysis of Hes1 gene expression and Ehrlich ascites tumor growth
inferred← citeshttps://doi.org/10.1016/j.jda.2007.06.003openalex-snapshot
Petri net modelling of biological regulatory networks
inferred← citeshttps://doi.org/10.1016/j.jmb.2005.12.003openalex-snapshot
The Incoherent Feed-forward Loop Accelerates the Response-time of the gal System of Escherichia coli
inferred← citeshttps://doi.org/10.1016/j.jtbi.2003.10.004openalex-snapshot
A logical analysis of the process of T cell activation: different consequences depending on the state of CD28 engagement
inferred← citeshttps://doi.org/10.1016/j.jtbi.2004.04.003openalex-snapshot
Application of formal methods to biological regulatory networks: extending Thomas’ asynchronous logical approach with temporal logic
inferred← citeshttps://doi.org/10.1016/j.jtbi.2004.04.037openalex-snapshot
A computational algebra approach to the reverse engineering of gene regulatory networks
inferred← citeshttps://doi.org/10.1016/j.jtbi.2005.03.015openalex-snapshot
An analytical study of the number of steady states in gene regulatory networks
inferred← citeshttps://doi.org/10.1016/j.jtbi.2005.07.011openalex-snapshot
Regulatory network for cell shape changes during Drosophila ventral furrow formation
inferred← citeshttps://doi.org/10.1016/j.jtbi.2006.08.010openalex-snapshot
Modeling the onset of virulence in a pectinolytic bacterium
inferred← citeshttps://doi.org/10.1016/j.jtbi.2007.06.017openalex-snapshot
Stochastic approach to molecular interactions and computational theory of metabolic and genetic regulations
inferred← citeshttps://doi.org/10.1016/j.jtbi.2007.09.004openalex-snapshot
Robustness and state-space structure of Boolean gene regulatory models
inferred← citeshttps://doi.org/10.1016/j.jtbi.2008.07.020openalex-snapshot
The transition from differential equations to Boolean networks: A case study in simplifying a regulatory network model
inferred← citeshttps://doi.org/10.1016/j.jtbi.2008.09.006openalex-snapshot
Reconstruction of transcription–translation dynamics with a model of gene networks
inferred← citeshttps://doi.org/10.1016/j.jtbi.2009.02.005openalex-snapshot
From structure to dynamics: Frequency tuning in the p53–Mdm2 network
inferred← citeshttps://doi.org/10.1016/j.jtbi.2010.02.008openalex-snapshot
Regulatory dynamics of standard two-component systems in bacteria
inferred← citeshttps://doi.org/10.1016/j.jtbi.2010.06.007openalex-snapshot
Analyzing steady states of dynamics of bio-molecules from the structure of regulatory networks
inferred← citeshttps://doi.org/10.1016/j.jtbi.2010.10.003openalex-snapshot
Modelling cell lineage using a meta-Boolean tree model with a relation to gene regulatory networks
inferred← citeshttps://doi.org/10.1016/j.jtbi.2018.10.025openalex-snapshot
Hyperchaos & labyrinth chaos: Revisiting Thomas–Rössler systems
inferred← citeshttps://doi.org/10.1016/j.jtbi.2018.10.026openalex-snapshot
Analysis of a genetic-metabolic oscillator with piecewise linear models
inferred← citeshttps://doi.org/10.1016/j.jtbi.2018.10.042openalex-snapshot
Revisiting a skeleton model for the mammalian cell cycle: From bistability to Cdk oscillations and cellular heterogeneity
inferred← citeshttps://doi.org/10.1016/j.jtbi.2019.01.015openalex-snapshot
Formalizing and enriching phenotype signatures using Boolean networks
inferred← citeshttps://doi.org/10.1016/j.jtbi.2019.01.036openalex-snapshot
Ensembles, dynamics, and cell types: Revisiting the statistical mechanics perspective on cellular regulation
inferred← citeshttps://doi.org/10.1016/j.matcom.2015.11.007openalex-snapshot
Nonlinear and temporal multiscale dynamics of gene regulatory networks: A qualitative simulator
inferred← citeshttps://doi.org/10.1016/j.mbs.2010.08.012openalex-snapshot
On multistability of delayed genetic regulatory networks with multivariable regulation functions
inferred← citeshttps://doi.org/10.1016/j.mbs.2011.10.005openalex-snapshot
Distinguishing possible mechanisms for auxin-mediated developmental control in Arabidopsis: Models with two Aux/IAA and ARF proteins, and two target gene-sets
inferred← citeshttps://doi.org/10.1016/j.mbs.2012.05.007openalex-snapshot
Turing-Hopf instability in biochemical reaction networks arising from pairs of subnetworks
inferred← citeshttps://doi.org/10.1016/j.mbs.2013.01.007openalex-snapshot
On the number of different dynamics in Boolean networks with deterministic update schedules
inferred← citeshttps://doi.org/10.1016/j.mbs.2024.109225openalex-snapshot
Lattice structures that parameterize regulatory network dynamics
inferred← citeshttps://doi.org/10.1016/j.nonrwa.2009.01.051openalex-snapshot
The asymptotical behavior of cyclic genetic regulatory networks
inferred← citeshttps://doi.org/10.1016/j.pbi.2006.11.008openalex-snapshot
Gene regulatory network models for plant development
inferred← citeshttps://doi.org/10.1016/j.pbi.2009.07.008openalex-snapshot
Back to the future: evolution of computational models in plant morphogenesis
inferred← citeshttps://doi.org/10.1016/j.pbiomolbio.2004.02.007openalex-snapshot
Transcriptional control networks of cell differentiation: insights from helper T lymphocytes
inferred← citeshttps://doi.org/10.1016/j.physa.2005.08.069openalex-snapshot
Relationships between the global structure of genetic networks and mRNA levels measured by cDNA microarrays
inferred← citeshttps://doi.org/10.1016/j.physa.2007.11.022openalex-snapshot
Evolution of gene regulatory networks: Robustness as an emergent property of evolution
inferred← citeshttps://doi.org/10.1016/j.physleta.2010.04.015openalex-snapshot
Self-sustained oscillations of complex genomic regulatory networks
inferred← citeshttps://doi.org/10.1016/j.shpsa.2017.11.002openalex-snapshot
Modelling gene regulation: (De)compositional and template-based strategies
inferred← citeshttps://doi.org/10.1016/j.sigpro.2005.02.016openalex-snapshot
Steady-state probabilities for attractors in probabilistic Boolean networks
inferred← citeshttps://doi.org/10.1016/j.tcs.2010.05.009openalex-snapshot
CTRL: Extension of CTL with regular expressions and fairness operators to verify genetic regulatory networks
inferred← citeshttps://doi.org/10.1016/j.tcs.2010.10.021openalex-snapshot
Dynamically consistent reduction of logical regulatory graphs
inferred← citeshttps://doi.org/10.1016/j.tcs.2011.12.054openalex-snapshot
Integrated regulatory networks (IRNs): Spatially organized biochemical modules
inferred← citeshttps://doi.org/10.1016/j.tcs.2011.12.061openalex-snapshot
An abstraction theory for qualitative models of biological systems
inferred← citeshttps://doi.org/10.1016/j.tcs.2015.08.040openalex-snapshot
Sufficient conditions for reachability in automata networks with priorities
inferred← citeshttps://doi.org/10.1016/j.ydbio.2010.06.020openalex-snapshot
Perturbation analysis analyzed—mathematical modeling of intact and perturbed gene regulatory circuits for animal development
inferred← citeshttps://doi.org/10.1016/s0022-5193(03)00201-7openalex-snapshot
Segmenting the fly embryo:
inferred← citeshttps://doi.org/10.1016/s0167-7306(05)40010-1openalex-snapshot
CHAPTER 10 Gene networks
inferred← citeshttps://doi.org/10.1016/s0303-2647(01)00102-2openalex-snapshot
Rhythmic and non-rhythmic attractors in asynchronous random Boolean networks
inferred← citeshttps://doi.org/10.1016/s0303-2647(02)00002-3openalex-snapshot
Robustness of MetaNet graph models:
inferred← citeshttps://doi.org/10.1016/s0303-2647(98)00087-2openalex-snapshot
The modularity of biological regulatory networks
inferred← citeshttps://doi.org/10.1016/s0304-3975(02)00425-5openalex-snapshot
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model
inferred← citeshttps://doi.org/10.1016/s0896-6273(00)81194-0openalex-snapshot
Mathematical Modeling of Gene Networks
inferred← citeshttps://doi.org/10.1016/s0924-8099(05)80037-xopenalex-snapshot
Course 10Modeling, analysis, and simulation of genetic regulatory networks: From differential equations to logical models
inferred← citeshttps://doi.org/10.1016/s0959-437x(03)00079-0openalex-snapshot
Dynamical modelling of pattern formation during embryonic development
inferred← citeshttps://doi.org/10.1016/s1369-5274(00)00137-5openalex-snapshot
Growth and development: Signals and their transduction
inferred← citeshttps://doi.org/10.1016/s1631-0691(02)01533-0openalex-snapshot
Roles of positive and negative feedback in biological systems
inferred← citeshttps://doi.org/10.1016/s1631-0691(03)00069-6openalex-snapshot
Genetic regulation networks: circuits, regulons and attractors
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