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Indexing nucleotide databases for fast query evaluation

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/spe.4380250307openalex-snapshot
Finding approximate matches in large lexicons
inferredcites →https://doi.org/10.1006/jmbi.1990.9999openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1007/bf00160485openalex-snapshot
A protein alignment scoring system sensitive at all evolutionary distances
inferredcites →https://doi.org/10.1007/bf00356557openalex-snapshot
The portable dictionary of the mouse genome: a personal database for gene mapping and molecular biology
inferredcites →https://doi.org/10.1007/bf01185432openalex-snapshot
A sublinear algorithm for approximate keyword searching
inferredcites →https://doi.org/10.1016/0306-4573(83)90062-6openalex-snapshot
Introduction to modern information retrieval
inferredcites →https://doi.org/10.1038/ng0294-119openalex-snapshot
Issues in searching molecular sequence databases
inferredcites →https://doi.org/10.1073/pnas.85.8.2444openalex-snapshot
Improved tools for biological sequence comparison.
inferredcites →https://doi.org/10.1093/nar/16.5.1865openalex-snapshot
The EMBL data library
inferredcites →https://doi.org/10.1093/nar/21.13.2963openalex-snapshot
GenBank
inferredcites →https://doi.org/10.1093/nar/21.13.2967openalex-snapshot
The EMBL data library
inferredcites →https://doi.org/10.1109/tit.1966.1053907openalex-snapshot
Run-length encodings (Corresp.)
inferredcites →https://doi.org/10.1109/tit.1975.1055349openalex-snapshot
Universal codeword sets and representations of the integers
inferredcites →https://doi.org/10.1126/science.1925538openalex-snapshot
Electronic Data Publishing and GenBank
inferredcites →https://doi.org/10.1126/science.2983426openalex-snapshot
Rapid and Sensitive Protein Similarity Searches
inferredcites →https://doi.org/10.1126/science.8211127openalex-snapshot
A New Five-Year Plan for the U.S. Human Genome Project
inferredcites →https://doi.org/10.1137/0206024openalex-snapshot
Fast Pattern Matching in Strings
inferredcites →https://doi.org/10.1145/133160.133210openalex-snapshot
Parameterised compression for sparse bitmaps
inferredcites →https://doi.org/10.1145/237496.237497openalex-snapshot
Self-indexing inverted files for fast text retrieval
inferredcites →https://doi.org/10.5860/choice.27-0351openalex-snapshot
Automatic text processing: the transformation, analysis, and retrieval of information by computer

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11227-006-0041-0openalex-snapshot
Survey on index based homology search algorithms
inferred← citeshttps://doi.org/10.1093/bioinformatics/13.5.549openalex-snapshot
Compression of nucleotide databases for fast searching
inferred← citeshttps://doi.org/10.1093/comjnl/42.3.193openalex-snapshot
Compressing Integers for Fast File Access
inferred← citeshttps://doi.org/10.1109/69.979973openalex-snapshot
Indexing and retrieval for genomic databases
inferred← citeshttps://doi.org/10.1109/dexa.1997.617258openalex-snapshot
Efficient querying on genomic databases by using metric space indexing techniques
inferred← citeshttps://doi.org/10.1109/ideas.2000.880565openalex-snapshot
StreamJoin: a generic database approach to support the class of stream-oriented applications
inferred← citeshttps://doi.org/10.1109/ssdm.1999.787631openalex-snapshot
A query system in a biological database
inferred← citeshttps://doi.org/10.1109/tcbb.2007.1029openalex-snapshot
Comparing Compressed Sequences for Faster Nucleotide BLAST Searches
inferred← citeshttps://doi.org/10.1109/uidis.1999.791459openalex-snapshot
The design of query interfaces to the GPCRDB biological database
inferred← citeshttps://doi.org/10.1145/258525.258561openalex-snapshot
Passage retrieval revisited
inferred← citeshttps://doi.org/10.1145/290747.290776openalex-snapshot
Manipulation of music for melody matching
inferred← citeshttps://doi.org/10.1145/290941.291078openalex-snapshot
Cafe
inferred← citeshttps://doi.org/10.1145/319463.319470openalex-snapshot
Melodic matching techniques for large music databases
inferred← citeshttps://doi.org/10.1145/584792.584832openalex-snapshot
On the efficient evaluation of relaxed queries in biological databases
inferred← citeshttps://doi.org/10.1145/584830.584832openalex-snapshot
On the efficient evaluation of relaxed queries in biological databases
inferred← citeshttps://doi.org/10.24348/coria.2008.197openalex-snapshot
Compression de structure XML pour la recherche d'information structurée.
inferred← citeshttps://doi.org/10.25439/rmt.27586443openalex-snapshot
Efficient homology search for genomic sequence databases
inferred← citeshttps://doi.org/10.5281/zenodo.1328979openalex-snapshot
Fast Database Indexing For Large Protein Sequence Collections Using Parallel N-Gram Transformation Algorithm
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