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Avoided Strings in Bacterial Complete Genomes and a Related Combinatorial Problem

https://doi.org/10.1007/pl00001279
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf01217347openalex-snapshot
Computation theory of cellular automata
inferredcites →https://doi.org/10.1016/0097-3165(81)90038-8openalex-snapshot
Periods in strings
inferredcites →https://doi.org/10.1016/s0960-0779(98)00182-9openalex-snapshot
Fractals related to long DNA sequences and complete genomes
inferredcites →https://doi.org/10.1038/32831openalex-snapshot
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
inferredcites →https://doi.org/10.1080/10236199908808197openalex-snapshot
The Goulden—Jackson cluster method: extensions, applications and implementations
inferredcites →https://doi.org/10.1112/jlms/s2-20.3.567openalex-snapshot
An Inversion Theorem for Cluster Decompositions of Sequences with Distinguished Subsequences
inferredcites →https://doi.org/10.1142/2877openalex-snapshot
Grammatical Complexity and One-Dimensional Dynamical Systems
inferredcites →https://doi.org/10.1142/3830openalex-snapshot
Applied Symbolic Dynamics and Chaos
inferredcites →https://doi.org/10.5860/choice.33-2176openalex-snapshot
The encyclopedia of integer sequences

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/9783527626359.ch5openalex-snapshot
Factorizable Language: From Dynamics to Biology
inferred← citeshttps://doi.org/10.1002/cpa.20096openalex-snapshot
The statistics of words on rings
inferred← citeshttps://doi.org/10.1007/978-3-319-56154-7_3openalex-snapshot
Lost Strings in Genomes: What Sense Do They Make?
inferred← citeshttps://doi.org/10.1007/978-3-540-73556-4_2openalex-snapshot
Combinatorics from Bacterial Genomes
inferred← citeshttps://doi.org/10.1007/s11538-005-9017-0openalex-snapshot
Information capacity of nucleotide sequences and Its applications
inferred← citeshttps://doi.org/10.1016/j.biosystems.2025.105635openalex-snapshot
From nullomers to abundant motifs: Fractals, CpG Bias, and Chargaff’s rules in genomic sequences
inferred← citeshttps://doi.org/10.1016/j.jtbi.2003.09.009openalex-snapshot
Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses
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Fractals of forbidden words and approximating their box dimensions
inferred← citeshttps://doi.org/10.1016/j.ygeno.2017.09.007openalex-snapshot
Evolutionary analysis of nucleosome positioning sequences based on New Symmetric Relative Entropy
inferred← citeshttps://doi.org/10.1016/s0375-9601(01)00336-xopenalex-snapshot
Distance, correlation and mutual information among portraits of organisms based on complete genomes
inferred← citeshttps://doi.org/10.1016/s0960-0779(00)00147-8openalex-snapshot
Time series model based on global structure of complete genome
inferred← citeshttps://doi.org/10.1017/s1446788722000052openalex-snapshot
SUBSHIFTS OF FINITE TYPE WITH A HOLE
inferred← citeshttps://doi.org/10.1080/10236190902841976openalex-snapshot
Generalizations of the Goulden–Jackson cluster method
inferred← citeshttps://doi.org/10.1088/0305-4470/34/36/301openalex-snapshot
Multifractal characterization of complete genomes
inferred← citeshttps://doi.org/10.1103/physreve.63.011903openalex-snapshot
Correlation property of length sequences based on global structure of the complete genome
inferred← citeshttps://doi.org/10.1109/csb.2002.1039327openalex-snapshot
Visualization of K-tuple distribution in procaryote complete genomes and their randomized counterparts
inferred← citeshttps://doi.org/10.1142/s0218348x11005166openalex-snapshot
ON THE VISUALIZATION OF STRINGS AND FRACTALS OF SOME FORBIDDEN WORDS
inferred← citeshttps://doi.org/10.3390/ijms21134651openalex-snapshot
Small-Angle Scattering and Multifractal Analysis of DNA Sequences
inferred← citeshttps://doi.org/10.3724/sp.j.1005.2010.00606openalex-snapshot
A new alignment-free sequence analysis based on the distribution of K-tuple
inferred← citeshttps://doi.org/10.4236/jamp.2019.78115openalex-snapshot
DNA Sequences with Forbidden Words and the Generalized Cantor Set
inferred← citeshttps://doi.org/10.48550/arxiv.q-bio/0501011openalex-snapshot
Information Capacity of Biological Macromoleculae Reloaded
inferred← citeshttps://doi.org/10.7282/t32v2f2copenalex-snapshot
Games, graphs, and sequences
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