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N-linked glycosite profiling and use of Skyline as a platform for characterization and relative quantification of glycans in differentiating xylem of Populus trichocarpa

https://doi.org/10.1007/s00216-016-9776-5
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Employing ProteoWizard to Convert Raw Mass Spectrometry Data
inferredcites →https://doi.org/10.1002/pmic.201300352openalex-snapshot
Exploring skyline for both MS E ‐based label‐free proteomics and HRMS quantitation of small molecules
inferredcites →https://doi.org/10.1007/978-94-011-5298-3_2openalex-snapshot
N-Glycoprotein biosynthesis in plants: recent developments and future trends
inferredcites →https://doi.org/10.1007/s00425-005-1498-4openalex-snapshot
The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes
inferredcites →https://doi.org/10.1007/s11295-016-0978-yopenalex-snapshot
A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa
inferredcites →https://doi.org/10.1007/s13361-013-0681-2openalex-snapshot
Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT): A Novel Glycan-Relative Quantification Strategy
inferredcites →https://doi.org/10.1016/0003-2697(92)90592-uopenalex-snapshot
A method for determination of N-glycosylation sites in glycoproteins by collision-induced dissociation analysis in fast atom bombardment mass spectrometry: Identification of the positions of carbohydrate-linked asparagine in recombinant α-amylase by treatment with peptide-N-glycosidase F in…
inferredcites →https://doi.org/10.1016/j.jprot.2015.05.015openalex-snapshot
Automating mass spectrometry-based quantitative glycomics using aminoxy tandem mass tag reagents with SimGlycan
inferredcites →https://doi.org/10.1016/s0304-4165(99)00165-8openalex-snapshot
On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database
inferredcites →https://doi.org/10.1021/ac0700833openalex-snapshot
High-Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Data Sets Using High-Resolution Mass Spectrometry
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Definitive Screening Design Optimization of Mass Spectrometry Parameters for Sensitive Comparison of Filter and Solid Phase Extraction Purified, INLIGHT PlasmaN-Glycans
inferredcites →https://doi.org/10.1021/acs.analchem.5b03886openalex-snapshot
Identification and Validation of Atypical N-Glycosylation Sites
inferredcites →https://doi.org/10.1021/acs.jproteome.5b00233openalex-snapshot
Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa
inferredcites →https://doi.org/10.1021/acs.jproteome.5b00703openalex-snapshot
Relative Quantification and Higher-Order Modeling of the Plasma Glycan Cancer Burden Ratio in Ovarian Cancer Case-Control Samples
inferredcites →https://doi.org/10.1021/acs.jproteome.5b00841openalex-snapshot
Adaptation of Skyline for Targeted Lipidomics
inferredcites →https://doi.org/10.1021/pr200578nopenalex-snapshot
Proteomic Screening Method for Phosphopeptide Motif Binding Proteins Using Peptide Libraries
inferredcites →https://doi.org/10.1021/pr300205aopenalex-snapshot
Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry
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Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments
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Accurate Identification of Deamidated Peptides in Global Proteomics Using a Quadrupole Orbitrap Mass Spectrometer
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Evaluation of the Effect of Trypsin Digestion Buffers on Artificial Deamidation
inferredcites →https://doi.org/10.1023/a:1006012005654openalex-snapshot
N-Glycoprotein biosynthesis in plants: recent developments and future trends
inferredcites →https://doi.org/10.1039/c4an00567hopenalex-snapshot
Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry
inferredcites →https://doi.org/10.1073/pnas.051625798openalex-snapshot
Arabidopsis cyt1 mutants are deficient in a mannose-1-phosphate guanylyltransferase and point to a requirement of N-linked glycosylation for cellulose biosynthesis
inferredcites →https://doi.org/10.1073/pnas.1116416109openalex-snapshot
Membrane protein complexes catalyze both 4- and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis
inferredcites →https://doi.org/10.1073/pnas.1510473112openalex-snapshot
Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O -methyltransferase activity in poplar monolignol biosynthesis
inferredcites →https://doi.org/10.1073/pnas.98.3.944openalex-snapshot
Molecular clocks
inferredcites →https://doi.org/10.1074/mcp.m800332-mcp200openalex-snapshot
Predicting Protein Post-translational Modifications Using Meta-analysis of Proteome Scale Data Sets
inferredcites →https://doi.org/10.1074/mcp.o111.009381openalex-snapshot
Detection, Evaluation and Minimization of Nonenzymatic Deamidation in Proteomic Sample Preparation
inferredcites →https://doi.org/10.1093/bioinformatics/btq054openalex-snapshot
Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
inferredcites →https://doi.org/10.1093/glycob/2.3.241openalex-snapshot
Structural analysis of the N-linked glycan chains from a stylar glycoprotein associated with expression of self-incompatibility in Nicotiana alata
inferredcites →https://doi.org/10.1093/glycob/3.3.241openalex-snapshot
Human non-secretory ribonucleases. I. Purification, peptide mapping and lectin blotting analysis of the kidney, liver and spleen enzymes
inferredcites →https://doi.org/10.1093/glycob/5.5.517openalex-snapshot
Microheterogeneity of N-glycosylation on a stylar self-incompatibility glycoprotein of Nicotiana alata
inferredcites →https://doi.org/10.1093/jexbot/49.324.1091openalex-snapshot
Effects of N-glycosylation on the folding and structure of plant proteins
inferredcites →https://doi.org/10.1093/pcp/pcp175openalex-snapshot
Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes
inferredcites →https://doi.org/10.1104/pp.118.1.125openalex-snapshot
Purification and Characterization of Peroxidases Correlated with Lignification in Poplar Xylem1
inferredcites →https://doi.org/10.1104/pp.126.1.317openalex-snapshot
Functional Characterization and Subcellular Localization of Poplar (Populus trichocarpa × Populus deltoides) Cinnamate 4-Hydroxylase
inferredcites →https://doi.org/10.1105/tpc.020297openalex-snapshot
Silencing of Hydroxycinnamoyl-Coenzyme A Shikimate/Quinate Hydroxycinnamoyltransferase Affects Phenylpropanoid Biosynthesis[W]
inferredcites →https://doi.org/10.1105/tpc.113.120881openalex-snapshot
Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa
inferredcites →https://doi.org/10.1111/j.1432-1033.1991.tb16166.xopenalex-snapshot
Peptide‐ N 4 ‐( N ‐acetyl‐β‐glucosaminyl)asparagine amidase F cannot release glycans with fucose attached α1 → 3 to the asparagine‐linked N ‐acetylglucosamine residue
inferredcites →https://doi.org/10.1111/j.1432-1033.1997.00195.xopenalex-snapshot
Primary Structure of 21 Novel Monoantennary and Diantennary N‐Linked Carbohydrate Chains from αD‐Hemocyanin of Helix Pomatia
inferredcites →https://doi.org/10.1186/1471-2148-1-1openalex-snapshot
Relatedness of baculovirus and gypsy retrotransposon envelope proteins
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The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists
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A Quantitative Glycomics and Proteomics Combined Purification Strategy

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1002/ange.201702191openalex-snapshot
Specific Identification of Glycoproteins Bearing the Tn Antigen in Human Cells
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Specific Identification of Glycoproteins Bearing the Tn Antigen in Human Cells
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Advances in mass spectrometry‐based glycomics—An update covering the period 2017–2021
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Reversed-phase separation methods for glycan analysis
inferred← citeshttps://doi.org/10.1007/s00216-017-0828-2openalex-snapshot
Demonstration of hydrazide tagging for O-glycans and a central composite design of experiments optimization using the INLIGHT™ reagent
inferred← citeshttps://doi.org/10.1007/s00216-020-02892-2openalex-snapshot
Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™
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Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT™ derivatized N-linked glycans in biological samples
inferred← citeshttps://doi.org/10.1007/s13361-016-1588-5openalex-snapshot
Xylose Migration During Tandem Mass Spectrometry of N-Linked Glycans
inferred← citeshttps://doi.org/10.1007/s13361-018-1932-zopenalex-snapshot
Discrimination of Isomers of Released N- and O-Glycans Using Diagnostic Product Ions in Negative Ion PGC-LC-ESI-MS/MS
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Comprehensive site- and structure-specific characterization of N-glycosylation in model plant Arabidopsis using mass-spectrometry-based N-glycoproteomics
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Dual UHPLC-HRMS Metabolomics and Lipidomics and Automated Data Processing Workflow for Comprehensive High-Throughput Gut Phenotyping
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Multinozzle Emitter for Improved Negative Mode Analysis of Reduced Native N-Glycans by Microflow Porous Graphitized Carbon Liquid Chromatography Mass Spectrometry
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Automated Integration and Quality Assessment of Chromatographic Peaks in LC–MS-Based Metabolomics and Lipidomics Using TARDIS
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Simultaneous Quantitation of Glycoprotein Degradation and Synthesis Rates by Integrating Isotope Labeling, Chemical Enrichment, and Multiplexed Proteomics
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Modeling cross-regulatory influences on monolignol transcripts and proteins under single and combinatorial gene knockdowns in Populus trichocarpa
inferred← citeshttps://doi.org/10.1556/019.70.2019.32openalex-snapshot
Allelic variation in candidate genes associated with wood properties of cultivated poplars (Populus)
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Evidence for poplar PtaPLATZ18 in the regulation of plant growth and vascular tissues development
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High-Throughput Glycomics Analysis Enabled by Multiplex Chemical Derivatization and Mass Spectrometry
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