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A foundation for comparative genomics and evolutionary studies in Nucella lapillus based on complete mitogenome assembly

https://doi.org/10.1007/s00227-024-04424-3

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/bijl.1994.1023openalex-snapshot

Allozyme differentiation of populations of the dogwhelk Nucella lapillus, (L.): the relative effects of geographic distance and variation in chromosome number

inferredcites →https://doi.org/10.1006/bijl.1994.1071openalex-snapshot

Phenotypic variation along a cline in allozyme and karyotype frequencies, and its relationship with habitat, in the dog-whelk Nucella lapillus, L.

inferredcites →https://doi.org/10.1007/bf00043013openalex-snapshot

Genetics and evolution of aquatic organisms

inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

inferredcites →https://doi.org/10.1007/s00338-005-0023-3openalex-snapshot

Analysis of complete mitochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia)

inferredcites →https://doi.org/10.1007/s10682-007-9221-5openalex-snapshot

The evolutionary mechanism maintaining shell shape and molecular differentiation between two ecotypes of the dogwhelk Nucella lapillus

inferredcites →https://doi.org/10.1007/s11033-009-9641-0openalex-snapshot

A comparative analysis of the complete mitochondrial genome of the Eurasian otter Lutra lutra (Carnivora; Mustelidae)

inferredcites →https://doi.org/10.1016/j.bbabio.2010.02.036openalex-snapshot

Human mitochondrial mRNAs—like members of all families, similar but different

inferredcites →https://doi.org/10.1016/j.ympev.2004.06.011openalex-snapshot

Ascidian molecular phylogeny inferred from mtDNA data with emphasis on the Aplousobranchiata

inferredcites →https://doi.org/10.1016/j.ympev.2010.03.008openalex-snapshot

A molecular phylogenetic framework for the Muricidae, a diverse family of carnivorous gastropods

inferredcites →https://doi.org/10.1016/s0167-4781(98)00099-2openalex-snapshot

7-Methylguanosine at the anticodon wobble position of squid mitochondrial tRNASerGCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria

inferredcites →https://doi.org/10.1016/s0378-1119(01)00819-8openalex-snapshot

ORF-FINDER: a vector for high-throughput gene identification

inferredcites →https://doi.org/10.1038/hdy.1975.26openalex-snapshot

Chromosomal polymorphism in Nucella lapillus

inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot

jModelTest 2: more models, new heuristics and parallel computing

inferredcites →https://doi.org/10.1038/nprot.2017.066openalex-snapshot

Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples

inferredcites →https://doi.org/10.1038/s41467-022-33530-3openalex-snapshot

A method for multiplexed full-length single-molecule sequencing of the human mitochondrial genome

inferredcites →https://doi.org/10.1038/s41576-021-00367-3openalex-snapshot

Towards population-scale long-read sequencing

inferredcites →https://doi.org/10.1038/s41587-019-0072-8openalex-snapshot

Assembly of long, error-prone reads using repeat graphs

inferredcites →https://doi.org/10.1038/s41592-018-0001-7openalex-snapshot

Accurate detection of complex structural variations using single-molecule sequencing

inferredcites →https://doi.org/10.1038/s41598-017-06930-5openalex-snapshot

Mitochondrial Genomes of Two Bombycoidea Insects and Implications for Their Phylogeny

inferredcites →https://doi.org/10.1038/s42003-022-04182-2openalex-snapshot

Mito-SiPE is a sequence-independent and PCR-free mtDNA enrichment method for accurate ultra-deep mitochondrial sequencing

inferredcites →https://doi.org/10.1046/j.1365-294x.1996.00108.xopenalex-snapshot

Phylogeography and population structure of the Atlantic and Mediterranean green turtle Chelonia mydas: a mitochondrial DNA control region sequence assessment

inferredcites →https://doi.org/10.1080/10425170701248525openalex-snapshot

Complete mitochondrial genome of the rabbitfishSiganus fuscescens(Perciformes, Siganidae)

inferredcites →https://doi.org/10.1080/23802359.2016.1186516openalex-snapshot

The complete mitochondrial genome of Menathais tuberosa (Gastropoda, Neogastropoda, Muricidae) collected from Chuuk Lagoon

inferredcites →https://doi.org/10.1080/23802359.2019.1591184openalex-snapshot

The complete mitochondrial genome of Pteropurpura falcatus (Sowerby, 1834)

inferredcites →https://doi.org/10.1080/23802359.2019.1591188openalex-snapshot

The complete mitochondrial genome of Boreotrophon candelabrum (Reeve, 1848)

inferredcites →https://doi.org/10.1080/23802359.2019.1591196openalex-snapshot

The complete mitochondrial genome of Ceratostoma inornata (Récluz, 1851)

inferredcites →https://doi.org/10.1080/23802359.2019.1591205openalex-snapshot

The complete mitochondrial genome of Ceratostoma burnetti (Adams Et Reeve, 1849)

inferredcites →https://doi.org/10.1093/bioinformatics/btn129openalex-snapshot

adegenet : a R package for the multivariate analysis of genetic markers

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp696openalex-snapshot

pegas: an R package for population genetics with an integrated–modular approach

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btq110openalex-snapshot

DensiTree: making sense of sets of phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot

Minimap2: pairwise alignment for nucleotide sequences

inferredcites →https://doi.org/10.1093/gbe/evad041openalex-snapshot

De novoAssembly and Comparative Analyses of Mitochondrial Genomes in Piperales

inferredcites →https://doi.org/10.1093/molbev/msg218openalex-snapshot

Complete mtDNA Sequence of the North American Freshwater Mussel, Lampsilis ornata (Unionidae): An Examination of the Evolution and Phylogenetic Utility of Mitochondrial Genome Organization in Bivalvia (Mollusca)

inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

inferredcites →https://doi.org/10.1093/mollus/eyu024openalex-snapshot

Phylogenetics of the gastropod genus Nucella (Neogastropoda: Muricidae): species identities, timing of diversification and correlated patterns of life-history evolution

inferredcites →https://doi.org/10.1093/nar/gkt371openalex-snapshot

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

inferredcites →https://doi.org/10.1093/nar/gkz833openalex-snapshot

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026282openalex-snapshot

An Ancient Transpecific Polymorphism Shows Extreme Divergence in a Multitrait Cline in an Intertidal Snail (Nucella lapillus (L.))

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040107openalex-snapshot

Population structure of the Japanese eel, Anguilla japonica.

inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

inferredcites →https://doi.org/10.1098/rstb.2009.0256openalex-snapshot

Repeated evolution of reproductive isolation in a marine snail: unveiling mechanisms of speciation

inferredcites →https://doi.org/10.1099/mgen.0.000740openalex-snapshot

Accuracy of an amplicon-sequencing nanopore approach to identify variants in tuberculosis drug-resistance-associated genes

inferredcites →https://doi.org/10.1111/j.1095-8312.2006.00567.xopenalex-snapshot

Chromosomal polymorphism in the Atlantic dog-whelk, Nucella lapillus (Gastropoda: Muricidae): nomenclature, variation and biogeography

inferredcites →https://doi.org/10.1111/j.1558-5646.1996.tb03617.xopenalex-snapshot

EVOLUTIONARY HISTORY OF NORTHERN HEMISPHERE NUCELLA (GASTROPODA, MURICIDAE): MOLECULAR, MORPHOLOGICAL, ECOLOGICAL, AND PALEONTOLOGICAL EVIDENCE

inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

inferredcites →https://doi.org/10.1186/s12862-019-1561-6openalex-snapshot

Phylogeographic history of flat periwinkles, Littorina fabalis and L. obtusata

inferredcites →https://doi.org/10.1186/s12862-020-01728-yopenalex-snapshot

Assessment of mitochondrial genomes for heterobranch gastropod phylogenetics

inferredcites →https://doi.org/10.1186/s12864-023-09277-6openalex-snapshot

Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes

inferredcites →https://doi.org/10.1186/s13059-021-02336-9openalex-snapshot

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

inferredcites →https://doi.org/10.1371/journal.pcbi.1006650openalex-snapshot

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

inferredcites →https://doi.org/10.1371/journal.pone.0017511openalex-snapshot

Glacial History of the North Atlantic Marine Snail, Littorina saxatilis, Inferred from Distribution of Mitochondrial DNA Lineages

inferredcites →https://doi.org/10.1371/journal.pone.0112963openalex-snapshot

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

inferredcites →https://doi.org/10.14440/jbm.2021.360openalex-snapshot

High throughput nanopore sequencing of SARS-CoV-2 viral genomes from patient samples

inferredcites →https://doi.org/10.2307/2410698openalex-snapshot

Evolutionary History of Northern Hemisphere Nucella (Gastropoda, Muricidae): Molecular, Morphological, Ecological, and Paleontological Evidence

inferredcites →https://doi.org/10.3354/meps06879openalex-snapshot

Contrasted patterns of genetic variation in the dogwhelk Nucella lapillus along two putative post-glacial expansion routes

inferredcites →https://doi.org/10.3390/genes9110517openalex-snapshot

Karyotype Characterization of Nine Periwinkle Species (Gastropoda, Littorinidae)

inferredcites →https://doi.org/10.7150/ijbs.3.85openalex-snapshot

A complete mitochondrial genome sequence of Asian black bear Sichuan subspecies (Ursus thibetanus mupinensis)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/zookeys.1239.143837zenodo-depositor-declared

Molecular and morphological data support the synonymy of Muricanthus radix Gmelin, 1791 and Muricanthus ambiguus Reeve, 1845 (Gastropoda, Muricidae)

inferred← citeshttps://doi.org/10.1093/cz/zoaf011openalex-snapshot

Phenotypic and genetic differentiation between two chromosomal taxa of the gastropod Nucella lapillus at Galician rocky shores (NW Spain)

inferred← citeshttps://doi.org/10.1093/g3journal/jkaf182openalex-snapshot

Annotated genome of the Atlantic dog whelk, Nucella lapillus

inferred← citeshttps://doi.org/10.3390/genes17050585openalex-snapshot

Complete Mitochondrial Genome of Haemulon plumierii (Lacepède, 1801) Supports Its Use as a Sentinel Reef Fish

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