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Opsin Evolution in Damselfish: Convergence, Reversal, and Parallel Evolution Across Tuning Sites

https://doi.org/10.1007/s00239-012-9525-0

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Opsin Phylogeny and Evolution: A Model for Blue Shifts in Wavelength Regulation

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Zooplankton capture by a coral reef fish: an adaptive response to evasive prey

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Interspecific variation in the visual pigments of deep-sea fishes

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The Eocene fishes of Monte Bolca: the earliest coral reef fish assemblage

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Rod and Cone Opsin Families Differ in Spectral Tuning Domains but Not Signal Transducing Domains as Judged by Saturated Evolutionary Trace Analysis

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Allelic Variation in Malawi Cichlid Opsins: A Tale of Two Genera

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Multidimensional polarization sensitivity in damselfishes

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Trophic niches of thirteen damselfishes (Pomacentridae) at the Grand Récif of Toliara, Madagascar

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The ecology of cone pigments in teleost fishes

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Ultraviolet visual pigments in marine fishes of the family pomacentridae

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The visual pigments of fish

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Parental fish change their cannibalistic behaviour in response to the cost-to-benefit ratio of parental care

inferredcites →https://doi.org/10.1016/j.cub.2003.10.044openalex-snapshot

Ancient colour vision: multiple opsin genes in the ancestral vertebrates

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The Shaping of Male Courtship Posture by Lateralized Gustatory Inputs to Male-Specific Interneurons

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A Species of Reef Fish that Uses Ultraviolet Patterns for Covert Face Recognition

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Potential ultraviolet vision in pre-settlement larvae and settled reef fish—A comparison across 23 families

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The relationship between lens transmission and opsin gene expression in cichlids from Lake Malawi

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Exploring the radiation of a diverse reef fish family: Phylogenetics of the damselfishes (Pomacentridae), with new classifications based on molecular analyses of all genera

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High molecular diversity in the rhodopsin gene in closely related goby fishes: A role for visual pigments in adaptive speciation?

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Opsin gene duplication and divergence in ray-finned fish

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Molecular evolution of color vision in vertebrates

inferredcites →https://doi.org/10.1016/s1055-7903(02)00278-6openalex-snapshot

Molecular phylogeny of 48 species of damselfishes (Perciformes: Pomacentridae) using 12S mtDNA sequences

inferredcites →https://doi.org/10.1016/s1055-7903(03)00278-1openalex-snapshot

Molecular systematics of the damselfishes (Teleostei: Pomacentridae): Bayesian phylogenetic analyses of mitochondrial and nuclear DNA sequences

inferredcites →https://doi.org/10.1016/s1350-9462(00)00002-1openalex-snapshot

Molecular evolution of vertebrate visual pigments

inferredcites →https://doi.org/10.1016/s1350-9462(00)00014-8openalex-snapshot

Vertebrate Photoreceptors

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The Visual Ecology of Avian Photoreceptors

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Mechanism of Spectral Tuning in the Dolphin Visual Pigments

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The Molecular Basis of Visual Excitation

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Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences

inferredcites →https://doi.org/10.1038/nature07285openalex-snapshot

Speciation through sensory drive in cichlid fish

inferredcites →https://doi.org/10.1038/nrg1316openalex-snapshot

Adaptive evolution and explosive speciation: the cichlid fish model

inferredcites →https://doi.org/10.1073/pnas.0405302102openalex-snapshot

Parallelism of amino acid changes at the RH1 affecting spectral sensitivity among deep-water cichlids from Lakes Tanganyika and Malawi

inferredcites →https://doi.org/10.1073/pnas.0802426105openalex-snapshot

Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates

inferredcites →https://doi.org/10.1073/pnas.232561099openalex-snapshot

The effect of selection on a long wavelength-sensitive ( LWS ) opsin gene of Lake Victoria cichlid fishes

inferredcites →https://doi.org/10.1086/416840openalex-snapshot

Optimization, Constraint, and History in the Evolution of Eyes

inferredcites →https://doi.org/10.1086/510141openalex-snapshot

Avian Visual Pigments: Characteristics, Spectral Tuning, and Evolution

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MODELTEST: testing the model of DNA substitution.

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A new method of inference of ancestral nucleotide and amino acid sequences.

inferredcites →https://doi.org/10.1093/icb/icp079openalex-snapshot

Gene duplication and differential gene expression play an important role in the diversification of visual pigments in fish

inferredcites →https://doi.org/10.1093/molbev/msi097openalex-snapshot

Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection

inferredcites →https://doi.org/10.1093/molbev/msi137openalex-snapshot

Adaptive Molecular Evolution in the Opsin Genes of Rapidly Speciating Cichlid Species

inferredcites →https://doi.org/10.1093/molbev/msl014openalex-snapshot

Evolution of the Cichlid Visual Palette through Ontogenetic Subfunctionalization of the Opsin Gene Arrays

inferredcites →https://doi.org/10.1093/molbev/msm050openalex-snapshot

Age of Cichlids: New Dates for Ancient Lake Fish Radiations

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PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msm092openalex-snapshot

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

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The Molecular Evolution of Avian Ultraviolet- and Violet-Sensitive Visual Pigments

inferredcites →https://doi.org/10.1093/molbev/msq171openalex-snapshot

Parallel Evolution of Opsin Gene Expression in African Cichlid Fishes

inferredcites →https://doi.org/10.1093/molbev/msq344openalex-snapshot

Reverse Evolution in RH1 for Adaptation of Cichlids to Water Depth in Lake Tanganyika

inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003773openalex-snapshot

Functional Diversification of Lepidopteran Opsins Following Gene Duplication

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004004openalex-snapshot

Natural Selection of the Rhodopsin Gene During the Adaptive Radiation of East African Great Lakes Cichlid Fishes

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025789openalex-snapshot

Detection of convergent and parallel evolution at the amino acid sequence level

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040153openalex-snapshot

A codon-based model of nucleotide substitution for protein-coding DNA sequences.

inferredcites →https://doi.org/10.1098/rstb.2000.0676openalex-snapshot

Communication and camouflage with the same ‘bright’ colours in reef fishes

inferredcites →https://doi.org/10.1109/ipdps.2011.344openalex-snapshot

Computing the Tree of Life: Leveraging the Power of Desktop and Service Grids

inferredcites →https://doi.org/10.1111/j.1365-2028.2004.00494.xopenalex-snapshot

Ultraviolet radiation enhances zooplanktivory rate in ultraviolet sensitive cichlids

inferredcites →https://doi.org/10.1111/j.1525-142x.2011.00469.xopenalex-snapshot

New evidence for the role of heterochrony in the repeated evolution of cichlid opsin expression

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00349.xopenalex-snapshot

FINE-SCALE PHYLOGEOGRAPHIC CONGRUENCE DESPITE DEMOGRAPHIC INCONGRUENCE IN TWO LOW-MOBILITY SAPROXYLIC SPRINGTAILS

inferredcites →https://doi.org/10.1126/science.860134openalex-snapshot

Evolution and Tinkering

inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.543openalex-snapshot

ADAPTIVE EVOLUTION OF PHOTORECEPTORS AND VISUAL PIGMENTS IN VERTEBRATES

inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164228openalex-snapshot

Evolution of Dim-Light and Color Vision Pigments

inferredcites →https://doi.org/10.1186/1471-2148-8-210openalex-snapshot

The molecular basis of color vision in colorful fish: Four Long Wave-Sensitive (LWS) opsins in guppies (Poecilia reticulata) are defined by amino acid substitutions at key functional sites

inferredcites →https://doi.org/10.1186/1471-2148-9-24openalex-snapshot

Form and function of damselfish skulls: rapid and repeated evolution into a limited number of trophic niches

inferredcites →https://doi.org/10.1186/1741-7007-6-22openalex-snapshot

Visual sensitivities tuned by heterochronic shifts in opsin gene expression

inferredcites →https://doi.org/10.1242/jeb.012880openalex-snapshot

Colour vision in coral reef fish

inferredcites →https://doi.org/10.1242/jeb.204.19.3333openalex-snapshot

The molecular basis for spectral tuning of rod visual pigments in deep-sea fish

inferredcites →https://doi.org/10.1371/journal.pbio.1000266openalex-snapshot

The Eyes Have It: Regulatory and Structural Changes Both Underlie Cichlid Visual Pigment Diversity

inferredcites →https://doi.org/10.1371/journal.pone.0005970openalex-snapshot

A Fish Eye Out of Water: Ten Visual Opsins in the Four-Eyed Fish, Anableps anableps

inferredcites →https://doi.org/10.1371/journal.pone.0008838openalex-snapshot

Parallel and Convergent Evolution of the Dim-Light Vision Gene RH1 in Bats (Order: Chiroptera)

inferredcites →https://doi.org/10.1385/1-59259-192-2:365openalex-snapshot

Primer3 on the WWW for General Users and for Biologist Programmers

inferredcites →https://doi.org/10.1643/0045-8511(2001)001[0591:pradtp]2.0.co;2openalex-snapshot

Phylogenetic Relationships among Damselfishes (Teleostei: Pomacentridae) as Determined by Mitochondrial DNA Data

inferredcites →https://doi.org/10.1643/01-053openalex-snapshot

Visual Biology of Hawaiian Coral Reef Fishes. I. Ocular Transmission and Visual Pigments

inferredcites →https://doi.org/10.1643/01-055openalex-snapshot

Visual Biology of Hawaiian Coral Reef Fishes. II. Colors of Hawaiian Coral Reef Fish

inferredcites →https://doi.org/10.1643/01-056openalex-snapshot

Visual Biology of Hawaiian Coral Reef Fishes. III. Environmental Light and an Integrated Approach to the Ecology of Reef Fish Vision

inferredcites →https://doi.org/10.2307/1446123openalex-snapshot

Fishes of the Great Barrier Reef and Coral Sea

inferredcites →https://doi.org/10.2307/1446968openalex-snapshot

Damselfishes of the World

inferredcites →https://doi.org/10.5860/choice.28-6264openalex-snapshot

Fishes of the Great Barrier Reef and Coral Sea

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.6620/zs.2022.61-16zenodo-depositor-declared

Correlated Expression of the Opsin Retrogene LWS-R and its Host Gene in Two Poeciliid Fishes.

inferred← citeshttps://doi.org/10.1002/dvg.22940openalex-snapshot

Proximate and ultimate causes of variable visual sensitivities: Insights from cichlid fish radiations

inferred← citeshttps://doi.org/10.1002/ece3.11186openalex-snapshot

Short‐wavelength‐sensitive 1 (SWS1) opsin gene duplications and parallel visual pigment tuning support ultraviolet communication in damselfishes (Pomacentridae)

inferred← citeshttps://doi.org/10.1007/978-1-4614-4355-1_8openalex-snapshot

Visual Photopigment Evolution in Speciation

inferred← citeshttps://doi.org/10.1007/s00239-024-10156-1openalex-snapshot

Multiple Ecological Axes Drive Molecular Evolution of Cone Opsins in Beloniform Fishes

inferred← citeshttps://doi.org/10.1007/s10750-023-05139-0openalex-snapshot

Rapid adjustment of cone opsin expression profiles may help Western mosquitofish (Gambusia affinis) maintain foraging efficiency in distinct light environments

inferred← citeshttps://doi.org/10.1007/s11692-015-9353-4openalex-snapshot

Partial Opsin Sequences Suggest UV-Sensitive Vision is Widespread in Caudata

inferred← citeshttps://doi.org/10.1007/s12562-015-0936-xopenalex-snapshot

Sequence analysis and expression patterns of opsin genes in the longtooth grouper Epinephelus bruneus

inferred← citeshttps://doi.org/10.1016/j.conb.2015.02.002openalex-snapshot

Colour vision in marine organisms

inferred← citeshttps://doi.org/10.1016/j.margen.2015.03.009openalex-snapshot

Evolutionary history and adaptive significance of the polymorphic Pan I in migratory and stationary populations of Atlantic cod (Gadus morhua)

inferred← citeshttps://doi.org/10.1016/j.semcdb.2020.06.007openalex-snapshot

Visual system diversity in coral reef fishes

inferred← citeshttps://doi.org/10.1038/s41598-019-52297-0openalex-snapshot

A detailed investigation of the visual system and visual ecology of the Barrier Reef anemonefish, Amphiprion akindynos

inferred← citeshttps://doi.org/10.1073/pnas.1818998116openalex-snapshot

Testing the role of trait reversal in evolutionary diversification using song loss in wild crickets

inferred← citeshttps://doi.org/10.1086/689605openalex-snapshot

Differential Survival between Visual Environments Supports a Role of Divergent Sensory Drive in Cichlid Fish Speciation

inferred← citeshttps://doi.org/10.1093/beheco/araf059openalex-snapshot

Antagonistic effects of predator color morph abundance and saliency on prey anti-predator responses

inferred← citeshttps://doi.org/10.1093/cz/zoac099openalex-snapshot

A test of the species confidence hypothesis in dusky damselfish

inferred← citeshttps://doi.org/10.1093/gbe/evab184openalex-snapshot

Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning of Photoreceptors in Anemonefishes (Amphiprioninae)

inferred← citeshttps://doi.org/10.1093/gbe/evx228openalex-snapshot

Genomic Environment Impacts Color Vision Evolution in a Family with Visually Based Sexual Selection

inferred← citeshttps://doi.org/10.1093/molbev/msv213openalex-snapshot

Multiple Genetic Mechanisms Contribute to Visual Sensitivity Variation in the Labridae

inferred← citeshttps://doi.org/10.1101/2024.08.22.609266openalex-snapshot

Damsels in a hidden colour: development of ultraviolet sensitivity and colour patterns in damselfishes (Pomacentridae)

inferred← citeshttps://doi.org/10.1101/503516openalex-snapshot

Opsin gene evolution in amphibious and terrestrial combtooth blennies (Blenniidae)

inferred← citeshttps://doi.org/10.1111/1749-4877.12466openalex-snapshot

Phylogenetic analysis and expression differences of eye‐related genes in cavefish genus Sinocyclocheilus

inferred← citeshttps://doi.org/10.1111/evo.12081openalex-snapshot

THE LOCI OF REPEATED EVOLUTION: A CATALOG OF GENETIC HOTSPOTS OF PHENOTYPIC VARIATION

inferred← citeshttps://doi.org/10.1111/evo.12572openalex-snapshot

SWS2 visual pigment evolution as a test of historically contingent patterns of plumage color evolution in warblers

inferred← citeshttps://doi.org/10.1111/jfb.13849openalex-snapshot

Colours and colour vision in reef fishes: Past, present and future research directions

inferred← citeshttps://doi.org/10.1111/mec.13180openalex-snapshot

Evolutionary dynamics of Rh2 opsins in birds demonstrate an episode of accelerated evolution in the New World warblers (Setophaga)

inferred← citeshttps://doi.org/10.1111/mec.13712openalex-snapshot

Depth‐dependent plasticity in opsin gene expression varies between damselfish (Pomacentridae) species

inferred← citeshttps://doi.org/10.1111/mec.13957openalex-snapshot

The opsin genes of amazonian cichlids

inferred← citeshttps://doi.org/10.1111/mec.13968openalex-snapshot

Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes

inferred← citeshttps://doi.org/10.1111/mec.14032openalex-snapshot

Evolutionary ecology of opsin gene sequence, expression and repertoire

inferred← citeshttps://doi.org/10.1111/mec.15102openalex-snapshot

Cardinalfishes (Apogonidae) show visual system adaptations typical of nocturnally and diurnally active fish

inferred← citeshttps://doi.org/10.1111/mec.17680openalex-snapshot

Damsels in Disguise: Development of Ultraviolet Sensitivity and Colour Patterns in Damselfishes (Pomacentridae)

inferred← citeshttps://doi.org/10.1242/bio.062593openalex-snapshot

Opsin gene evolution in aquatic, amphibious and terrestrial blennies (Blenniidae)

inferred← citeshttps://doi.org/10.1242/jeb.175281openalex-snapshot

Short term colour vision plasticity on the reef: Changes in opsin expression under varying light conditions differ between ecologically distinct reef fish species

inferred← citeshttps://doi.org/10.1242/jeb.193334openalex-snapshot

Seeing the rainbow: mechanisms underlying spectral sensitivity in teleost fishes

inferred← citeshttps://doi.org/10.1242/jeb.209916openalex-snapshot

Visual system development of the spotted unicornfish, Naso brevirostris (Acanthuridae)

inferred← citeshttps://doi.org/10.1371/journal.pbio.2001627openalex-snapshot

Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments

inferred← citeshttps://doi.org/10.1371/journal.pone.0206918openalex-snapshot

Rhodopsin gene evolution in early teleost fishes

inferred← citeshttps://doi.org/10.1590/0001-3765201720150692openalex-snapshot

Long-wavelength sensitive opsin (LWS) gene variability in Neotropical cichlids (Teleostei: Cichlidae)

inferred← citeshttps://doi.org/10.1643/i2020105openalex-snapshot

Systematics of Damselfishes

inferred← citeshttps://doi.org/10.32388/92au5xopenalex-snapshot

Damsels in a Hidden Colour: Development of Ultraviolet Sensitivity and Colour Patterns in Damselfishes (Pomacentridae)

inferred← citeshttps://doi.org/10.4025/actascibiolsci.v38i2.28295openalex-snapshot

Opsin genes: research perspectives with Neotropical cichlids (Perciformes: Cichlidae) and their relevance in floodplain studies

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Parallel phenotypes underpinned by different genes in the visual system of two trans-isthmian coral reef fish species pairs

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