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Neutral and Nonneutral Mitochondrial Genetic Variation in Deep-Sea Clams from the Family Vesicomyidae

https://doi.org/10.1007/s002399910016
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-4615-2381-9openalex-snapshot
Molecular Markers, Natural History and Evolution
inferredcites →https://doi.org/10.1007/978-1-4615-2383-3_1openalex-snapshot
Alternatives to the Neutral Theory
inferredcites →https://doi.org/10.1007/978-94-011-5210-5_6openalex-snapshot
Deleterious mutations in animal mitochondrial DNA
inferredcites →https://doi.org/10.1007/bf00166595openalex-snapshot
Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory
inferredcites →https://doi.org/10.1007/bf00166596openalex-snapshot
On Ohta's hypothesis: Most amino acid substitutions are deleterious
inferredcites →https://doi.org/10.1007/bf00350872openalex-snapshot
Phylogenetic relationships among species of Calyptogena (Bivalvia: Vesicomyidae) collected around Japan revealed by nucleotide sequences of mitochondrial genes
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/bf02285170openalex-snapshot
Life habit of vesicomyid clam,Calyptogena soyoae, and hydrogen sulfide concentration in interstitial waters in Sagami Bay, Japan
inferredcites →https://doi.org/10.1007/bf02339010openalex-snapshot
Secondary Structure and Patterns of Evolution Among Mammalian Mitochondrial 12S rRNA Molecules
inferredcites →https://doi.org/10.1007/s002270050234openalex-snapshot
Evolutionary relationships of deep-sea hydrothermal vent and cold-water seep clams (Bivalvia: Vesicomyidae): results from the mitochondrial cytochrome oxidase subunit I
inferredcites →https://doi.org/10.1016/0967-0637(94)90039-6openalex-snapshot
Cryptic species of deep-sea clams (Mollusca: Bivalvia: Vesicomyidae) from hydrothermal vent and cold-water seep environments
inferredcites →https://doi.org/10.1038/246096a0openalex-snapshot
Slightly Deleterious Mutant Substitutions in Evolution
inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot
Adaptive protein evolution at the Adh locus in Drosophila
inferredcites →https://doi.org/10.1073/pnas.84.17.6225openalex-snapshot
Confidence interval for the number of selectively neutral amino acid polymorphisms.
inferredcites →https://doi.org/10.1073/pnas.91.14.6364openalex-snapshot
Nonneutral evolution at the mitochondrial NADH dehydrogenase subunit 3 gene in mice.
inferredcites →https://doi.org/10.1073/pnas.95.17.9962openalex-snapshot
Cospeciation of chemoautotrophic bacteria and deep sea clams
inferredcites →https://doi.org/10.1093/bioinformatics/10.6.671openalex-snapshot
The genetic data environment an expandable GUI for multiple sequence analysis
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
inferredcites →https://doi.org/10.1093/genetics/116.1.153openalex-snapshot
A Test of Neutral Molecular Evolution Based on Nucleotide Data
inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
inferredcites →https://doi.org/10.1093/genetics/133.3.693openalex-snapshot
Statistical tests of neutrality of mutations.
inferredcites →https://doi.org/10.1093/genetics/134.2.597openalex-snapshot
Rates and patterns of base change in the small subunit ribosomal RNA gene.
inferredcites →https://doi.org/10.1093/genetics/138.3.741openalex-snapshot
Neutral and non-neutral evolution of Drosophila mitochondrial DNA.
inferredcites →https://doi.org/10.1093/genetics/138.3.757openalex-snapshot
Unraveling selection in the mitochondrial genome of Drosophila.
inferredcites →https://doi.org/10.1093/genetics/141.1.413openalex-snapshot
Properties of statistical tests of neutrality for DNA polymorphism data.
inferredcites →https://doi.org/10.1093/genetics/142.3.953openalex-snapshot
Nonneutral Mitochondrial DNA Variation in Humans and Chimpanzees
inferredcites →https://doi.org/10.1093/genetics/144.3.1263openalex-snapshot
Contingency Tests of Neutrality Using Intra/Interspecific Gene Trees: The Rejection of Neutrality for the Evolution of the Mitochondrial Cytochrome Oxidase II Gene in the Hominoid Primates
inferredcites →https://doi.org/10.1093/genetics/145.3.833openalex-snapshot
A Coalescent Estimator of the Population Recombination Rate
inferredcites →https://doi.org/10.1093/genetics/148.1.409openalex-snapshot
Departure from Neutrality at the Mitochondrial NADH Dehydrogenase Subunit 2 Gene in Humans, but Not in Chimpanzees
inferredcites →https://doi.org/10.1093/genetics/149.3.1511openalex-snapshot
Nonneutral Evolution and Differential Mutation Rate of Gender-Associated Mitochondrial DNA Lineages in the Marine Mussel Mytilus
inferredcites →https://doi.org/10.1093/genetics/150.1.359openalex-snapshot
Deleterious Mutations at the Mitochondrial ND3 Gene in South American Marsh Rats (Holochilus)
inferredcites →https://doi.org/10.1093/genetics/151.1.221openalex-snapshot
Inferring the Fitness Effects of DNA Mutations From Polymorphism and Divergence Data: Statistical Power to Detect Directional Selection Under Stationarity and Free Recombination
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/24.1.92openalex-snapshot
Database on the structure of large ribosomal subunit RNA
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025749openalex-snapshot
Mitochondrial and nuclear genes present conflicting portraits of human origins
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025810openalex-snapshot
Comparative nuclear and mitochondrial genome diversity in humans and chimpanzees
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025877openalex-snapshot
Preponderance of Slightly Deleterious Polymorphism in Mitochondrial DNA: Nonsynonymous/Synonymous Rate Ratio is Much Higher Within Species than Between Species
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025879openalex-snapshot
Accelerated Evolutionary Rate in Sulfur-Oxidizing Endosymbiotic Bacteria Associated with the Mode of Symbiont Transmission
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a039998openalex-snapshot
Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis.
inferredcites →https://doi.org/10.1146/annurev.ecolsys.23.1.263openalex-snapshot
The Nearly Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1266/jjg.68.539openalex-snapshot
Relaxed natural selection in human populations during the Pleistocene.
inferredcites →https://doi.org/10.3354/meps132109openalex-snapshot
Structure and distribution of cold seep communities along the Peruvian active margin:relationship to geological and fluid patterns
inferredcites →https://doi.org/10.4319/lo.1997.42.2.0318openalex-snapshot
The influence of pore‐water chemistry and physiology on the distribution of vesicomyid clams at cold seeps in Monterey Bay: Implications for patterns of chemosynthetic community organization
inferredcites →https://doi.org/10.5281/zenodo.15145663openalex-snapshot
Table 1 in A new Gammarus species from Xinjiang Uygur Autonomous Region (China) with a key to Xinjiang freshwater gammarids (Crustacea, Amphipoda, Gammaridae)
inferredcites →https://doi.org/10.5860/choice.30-2064openalex-snapshot
The causes of molecular evolution
inferredcites →https://doi.org/10.5962/bhl.part.11941openalex-snapshot
The giant white calm from the Galapagos Rift, Calyptogena magnifica species novum

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A new genus Turneroconcha (Bivalvia: Vesicomyidae: Pliocardiinae) for the giant hydrothermal vent clam ‘Calyptogena’ magnifica
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A faunal inventory of methane seeps on the Pacific margin of Costa Rica
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Comparative mitochondrial genomic analyses of three chemosynthetic vesicomyid clams from deep‐sea habitats
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Evolutionary relationships of deep-sea vent and cold seep clams (Mollusca: Vesicomyidae) of the "pacifica/lepta" species complex
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Genetic heterogeneity among New Zealand species of hydrothermal vent mussels (Mytilidae: Bathymodiolus )
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Phylogenetic relationships of deep-sea mussels of the genus Bathymodiolus (Bivalvia: Mytilidae)
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Community structure in Florida Escarpment seep and Snake Pit (Mid-Atlantic Ridge) vent mussel beds
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The smaller vesicomyid bivalves in the genus Isorropodon (Bivalvia, Vesicomyidae, Pliocardiinae) also harbour chemoautotrophic symbionts
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Molecular data reveal a highly diverse species flock within the munnopsoid deep-sea isopod Betamorpha fusiformis (Barnard, 1920) (Crustacea: Isopoda: Asellota) in the Southern Ocean
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Vesicomyinae (Bivalvia: Vesicomyidae) of the Kuril–Kamchatka Trench and adjacent abyssal regions
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Gene flow between Atlantic and Pacific Ocean basins in three lineages of deep-sea clams (Bivalvia: Vesicomyidae: Pliocardiinae) and subsequent limited gene flow within the Atlantic
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Pliocardiinae (Bivalvia: Vesicomyidae) from methane seeps in the abyssal and hadal zones of the western Aleutian Trench (Pacific Ocean)
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Multiple trans-Pacific migrations of deep-sea vent/seep-endemic bivalves in the family Vesicomyidae
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Blake Ridge methane seeps: characterization of a soft-sediment, chemosynthetically based ecosystem
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Reproductive biology of Alvinocaris muricola (Decapoda: Caridea: Alvinocarididae) from cold seeps in the Congo Basin
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‘Pliocardia' krylovata, a new species of vesicomyid clam from cold seeps along the Costa Rica Margin
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Molecular taxonomy reveals broad trans-oceanic distributions and high species diversity of deep-sea clams (Bivalvia: Vesicomyidae: Pliocardiinae) in chemosynthetic environments
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Austrogena: a new genus of chemosymbiotic bivalves (Bivalvia; Vesicomyidae; Pliocardiinae) from the oxygen minimum zone off central Chile described through morphological and molecular analyses
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DNA barcoding for species identification in deep-sea clams (Mollusca: Bivalvia: Vesicomyidae)
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Discordance between Genetic Structure and Morphological, Ecological, and Physiological Adaptation in Lake Magadi Tilapia
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Evidence for Homologous Recombination in Intracellular Chemosynthetic Clam Symbionts
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Recent bivalve molluscs of the genus Calyptogena (Vesicomyidae)
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Bivalvia - a look at the Branches
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Evolution and Biogeography of Deep-Sea Vent and Seep Invertebrates
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Bivalves of the family Vesicomyidae from the Neogene Mediterranean basin (Bivalvia: Vesicomyidae)
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Does Nonneutral Evolution Shape Observed Patterns of DNA Variation in Animal Mitochondrial Genomes?
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Population genetic structure in Sabatieria (Nematoda) reveals intermediary gene flow and admixture between distant cold seeps from the Mediterranean Sea
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Phylogeny and Diversification Patterns among Vesicomyid Bivalves
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Synonymy of Calyptogena solidissima with Calyptogena kawamurai (Bivalvia: Vesicomyidae) and Its Population Structure Revealed by Mitochondrial DNA Sequences
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Patterns of nucleotide substitution within and among mitochondrial gene regions in sea star (Leptasterias spp)
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A new genus of large Vesicomyidae (Mollusca, Bivalvia, Vesicomyidae, Pliocardiinae) from the Congo margin, with the first record of the subfamily Pliocardiinae in the Bay of Biscay (northeastern Atlantic)
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