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Analysis of Soil Whole- and Inner-Microaggregate Bacterial Communities

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Soil organic matter and structural stability: mechanisms and implications for management
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Changes in bacterial populations along roots of wheat (Triticum aestivum L.) seedlings
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Soil organic matter and structural stability: mechanisms and implications for management
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Short-term changes in the spatial distribution of microorganisms in soil aggregates as affected by glucose addition
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Distribution of microbial biomass and its activity in different soil aggregate size classes as affected by cultivation
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Soil macroaggregate turnover and microaggregate formation: a mechanism for C sequestration under no-tillage agriculture
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Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian arid soils
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Sources and composition of soil organic matter fractions between and within soil aggregates
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Nature of organic carbon and nitrogen in physically protected organic matter of some Australian soils as revealed by solid-state 13 C and 15 N NMR spectroscopy
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The RDP (Ribosomal Database Project)
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The RDP-II (Ribosomal Database Project)
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Organic matter and water‐stable aggregates in soils
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High energy ultraviolet photo‐oxidation: a novel technique for studying physically protected organic matter in clay‐ and silt‐sized aggregates
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Molecular phylogenetic analysis of a soil microbial community in a soybean field
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Changes in the microbial community and physico‐chemical characteristics of topsoils stockpiled during opencast mining
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Estimation of the abundance of an uncultured soil bacterial strain by a competitive quantitative PCR method
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Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil
inferredcites →https://doi.org/10.1128/aem.65.4.1721-1730.1999openalex-snapshot
Molecular Analysis of Bacterial Community Structure and Diversity in Unimproved and Improved Upland Grass Pastures
inferredcites →https://doi.org/10.1128/aem.67.1.190-197.2001openalex-snapshot
Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities
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Investigation of Candidate Division TM7, a Recently Recognized Major Lineage of the Domain Bacteria with No Known Pure-Culture Representatives
inferredcites →https://doi.org/10.1128/aem.67.9.4215-4224.2001openalex-snapshot
Microbial Population Structures in Soil Particle Size Fractions of a Long-Term Fertilizer Field Experiment
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Molecular and Culture-Based Analyses of Prokaryotic Communities from an Agricultural Soil and the Burrows and Casts of the EarthwormLumbricus rubellus
inferredcites →https://doi.org/10.2136/sssaj1999.6351350xopenalex-snapshot
Aggregate and Soil Organic Matter Dynamics under Conventional and No‐Tillage Systems
inferredcites →https://doi.org/10.2136/sssaj2000.642681xopenalex-snapshot
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The Physical Environment in Soil Microbiology: An Attempt to Extend Principles of Microbiology to Soil Microorganisms

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Integrated Aggregate Turnover and Soil Organic Carbon Accumulation in Ultisols Using Rare Earth Oxides and 13c Isotope as Dual Tracers
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Soil Micro-Pore Structure and Associating Water and Fungi Conspire to Regulate Bacterial Early-Stage Colonization
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Challenges of species distribution modeling belowground
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Microaggregates in soils
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Role of Microbial Extracellular Polymeric Substances in Soil Fertility
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Bacterial Activity, Community Structure, and Centimeter-Scale Spatial Heterogeneity in Contaminated Soil
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Spatial Stratification of Soil Bacterial Populations in Aggregates of Diverse Soils
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Microarray analysis of bacterial diversity and distribution in aggregates from a desert agricultural soil
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The impact of increasing heavy metal stress on the diversity and structure of the bacterial and actinobacterial communities of metallophytic grassland soil
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Warming effects on biomass and composition of microbial communities and enzyme activities within soil aggregates in subtropical forest
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Dynamics of bacterial communities in relation to soil aggregate formation during the decomposition of 13C-labelled rice straw
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Soil microbial community responses to sulfadiazine-contaminated manure in different soil microhabitats
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Separation of soil microbial community structure by aggregate size to a large extent under agricultural practices during early pedogenesis of a Mollisol
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The influence of aggregate size fraction and horizon position on microbial community composition
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DNA occurrence in organic matter fractions isolated from amended, agricultural soils
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Soil microhabitats mediate microbial response in organic reduced tillage cropping
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Land use change from upland to paddy field in Mollisols drives soil aggregation and associated microbial communities
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Stochastic and deterministic assembly processes of bacterial communities in different soil aggregates
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Native rhizobacteria as biocontrol agents of Heterobasidion annosum s.s. and Armillaria mellea infection of Pinus radiata
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Particulate organic carbon at reclaimed and unreclaimed post-mining soils and its microbial community composition
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Soil wet aggregate distribution and pore size distribution under different tillage systems after 16 years in the Loess Plateau of China
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Effect of tea plantation age on the distribution of soil organic carbon and nutrient within micro-aggregates in the hilly region of western Sichuan, China
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BactoTraits – A functional trait database to evaluate how natural and man-induced changes influence the assembly of bacterial communities
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Biosolids blended with edaphic supports mimic structural and biochemical features of natural soils and foster plant biomass growth
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Ageing processes and soil microbial community effects on the biodegradation of soil 13C-2,4-D nonextractable residues
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Soil pores and their contributions to soil carbon processes
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Interactive effects of compost, plants and earthworms on the aggregations of constructed Technosols
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Crop straw incorporation mediates the impacts of soil aggregate size on greenhouse gas emissions
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Integrated aggregate turnover and soil organic carbon sequestration using rare earth oxides and 13C isotope as dual tracers
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Two pathways for reducing soil aggregate organic carbon mineralisation via minimum tillage under a long-term field experiment
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Endogeic earthworms differentially influence bacterial communities associated with different soil aggregate size fractions
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Nano-scale secondary ion mass spectrometry — A new analytical tool in biogeochemistry and soil ecology: A review article
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How do grassland management history and bacterial micro-localisation affect the response of bacterial community structure to changes in aboveground grazing regime?
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Importance of spatially structured environmental heterogeneity in controlling microbial community composition at small spatial scales in an agricultural field
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Microbial community composition and carbon cycling within soil microenvironments of conventional, low-input, and organic cropping systems
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Microbial biogeography at the soil pore scale
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Pyrosequencing and mid-infrared spectroscopy reveal distinct aggregate stratification of soil bacterial communities and organic matter composition
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Soil fauna increase nitrogen loss in tilled soil with legume but reduce nitrogen loss in non-tilled soil without legume
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Contributions of soil biota to C sequestration varied with aggregate fractions under different tillage systems
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Soil aggregate isolation method affects measures of intra-aggregate extracellular enzyme activity
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Variable responses of ammonia oxidizers across soil particle-size fractions affect nitrification in a long-term fertilizer experiment
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Greatest soil microbial diversity found in micro-habitats
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Separate drivers for microbial carbon mineralization and physical protection of carbon
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Soil aggregates by design: Manufactured aggregates with defined microbial composition for interrogating microbial activities in soil microhabitats
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Drought accelerated recalcitrant carbon loss by changing soil aggregation and microbial communities in a subtropical forest
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Deciphering sample size effect on microbial biogeographic patterns and community assembly processes at centimeter scale
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Evaluation of the environmental specificity of Fluorescence In Situ Hybridization (FISH) using Fluorescence-Activated Cell Sorting (FACS) of probe (PSE1284)-positive cells extracted from rhizosphere soil
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Chapter 4 Microbial Distribution in Soils
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Response and resilience of soil biocrust bacterial communities to chronic physical disturbance in arid shrublands
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Linking microbial community structure to β-glucosidic function in soil aggregates
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Spatial organization of bacterial populations in response to oxygen and carbon counter-gradients in pore networks
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Effect of organic amendments on soil structure, microbial community and water transport in the Qinghai Lake watershed, North-Eastern Qinghai–Tibet Plateau
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The extracellular DNA can baffle the assessment of soil bacterial community, but the effect varies with microscale spatial distribution
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A walk on the dirt: soil microbial forensics from ecological theory to the crime lab
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Multi-omics resolved integration reveals microbial niche separation in soil aggregates
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Micro-aggregation of a pristine grassland soil selects for bacterial and fungal communities and changes in nitrogen cycling potentials
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Mineral composition and charcoal determine the bacterial community structure in artificial soils
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Regulation of soil organic C mineralisation at the pore scale
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Heavy metal pollution decreases microbial abundance, diversity and activity within particle-size fractions of a paddy soil
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Comparison of DNA- and RNA-based bacterial community structures in soil exposed to 2,4-dichlorophenol
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Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH‐contaminated soil
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Abundance and diversity of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX)-metabolizing bacteria in UXO-contaminated marine sediments
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A plant growth-promoting pseudomonad is closely related to thePseudomonas syringaecomplex of plant pathogens
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Soil-specific limitations for access and analysis of soil microbial communities by metagenomics
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The structure of microbial community in aggregates of a typical chernozem aggregates under contrasting variants of its agricultural use
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Enzymatic activity inside and outside of water-stable aggregates in soils under different land use
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Heterogeneity of Organic Matter of Aggregates of Protocalcic Chernozems
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Comunidade bacteriana, atributos do solo e fluxo de gases em solo sob Cerrado e cana-de-açúcar
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Propagating the missing bacteriophages: a large bacteriophage in a new class.
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Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin
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Conservation Agriculture, Improving Soil Quality for Sustainable Production Systems?
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Do microorganisms influence seed-bank dynamics?
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Emerging threats to the stability of soil aggregates
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Estimation of method of Separation of Periphery and Inner Parts of Soil Aggregates by Mechanical Abrasion
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Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems
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Soil Microbial Community Analysis using Terminal Restriction Fragment Length Polymorphisms
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Intra‐aggregate Pore Structure Influences Phylogenetic Composition of Bacterial Community in Macroaggregates
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Fatty‐Acid Profiles and Enzyme Activities in Soil Particle‐Size Fractions under Long‐Term Fertilization
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Long-term adoption of bed planted conservation agriculture based maize/cotton-wheat system enhances soil organic carbon stabilization within aggregates in the indo-gangetic plains
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Nitrite-Oxidizing Bacteria Community Composition and Diversity Are Influenced by Fertilizer Regimes, but Are Independent of the Soil Aggregate in Acidic Subtropical Red Soil
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Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation
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The microbiome structure of decomposing plant leaves in soil depends on plant species, soil pore sizes, and soil moisture content
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Biotechnology of Microorganisms from Coal Environments: From Environmental Remediation to Energy Production
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Variations in the Compositions of Soil Bacterial and Fungal Communities Due to Microhabitat Effects Induced by Simulated Nitrogen Deposition of a Bamboo Forest in Wetland
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Litter Inputs Control the Pattern of Soil Aggregate-Associated Organic Carbon and Enzyme Activities in Three Typical Subtropical Forests
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Faculty Opinions recommendation of Spatial organization of bacterial populations in response to oxygen and carbon counter-gradients in pore networks.
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Two different microbial communities did not cause differences in occlusion of particulate organic matter in a sandy agricultural soil
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Soil quality of the tea and apple-growing sites in Mindat District, Chin state, Myanmar: A preliminary study
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Study of bacterial populations from oligotrophic soil ecosystems using high throughput sequencing technologies
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Diversité bactérienne des sols : accès aux populations à effectifs minoritaires "the rare biosphere"
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