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River Flow Impacts Bacterial and Archaeal Community Structure in Surface Sediments in the Northern Gulf of Mexico

https://doi.org/10.1007/s00248-018-1184-2
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Using QIIME to Analyze 16S rRNA Gene Sequences from Microbial Communities
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Anoxygenic Phototrophic Purple Bacteria
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Temporal variability in summertime bottom hypoxia in shallow areas of Mobile Bay, Alabama
inferredcites →https://doi.org/10.1007/s00338-008-0427-yopenalex-snapshot
Diverse communities of active Bacteria and Archaea along oxygen gradients in coral reef sediments
inferredcites →https://doi.org/10.1007/s11368-012-0542-9openalex-snapshot
Nitrate reduction coupled with microbial oxidation of sulfide in river sediment
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Meiofauna abundance on the Gulf of Mexico continental shelf affected by hypoxia
inferredcites →https://doi.org/10.1016/j.csr.2009.12.015openalex-snapshot
Contribution of phytoplankton and benthic microalgae to inner shelf sediments of the north-central Gulf of Mexico
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Modelling benthic oxygen consumption and benthic-pelagic coupling at a shallow station in the southern North Sea
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A modeling study of water and salt exchange for a micro-tidal, stratified northern Gulf of Mexico estuary
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Genetic assessment of meiobenthic community composition and spatial distribution in coastal sediments along northern Gulf of Mexico
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The role of Mississippi River discharge in offshore phytoplankton blooming in the northeastern Gulf of Mexico during August 2010
inferredcites →https://doi.org/10.1016/s0925-8574(99)00049-xopenalex-snapshot
Biogeochemistry of Gulf of Mexico Estuaries
inferredcites →https://doi.org/10.1038/356148a0openalex-snapshot
Novel major archaebacterial group from marine plankton
inferredcites →https://doi.org/10.1038/ismej.2007.90openalex-snapshot
Uncultured archaea in deep marine subsurface sediments: have we caught them all?
inferredcites →https://doi.org/10.1038/ismej.2009.23openalex-snapshot
Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing
inferredcites →https://doi.org/10.1038/ismej.2011.132openalex-snapshot
Diversity and dynamics of rare and of resident bacterial populations in coastal sands
inferredcites →https://doi.org/10.1038/ismej.2011.139openalex-snapshot
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
inferredcites →https://doi.org/10.1038/ismej.2012.37openalex-snapshot
Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
inferredcites →https://doi.org/10.1038/ismej.2013.174openalex-snapshot
Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
inferredcites →https://doi.org/10.1038/ismej.2014.213openalex-snapshot
Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems
inferredcites →https://doi.org/10.1038/ismej.2015.143openalex-snapshot
Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage
inferredcites →https://doi.org/10.1038/nature03911openalex-snapshot
Isolation of an autotrophic ammonia-oxidizing marine archaeon
inferredcites →https://doi.org/10.1038/nature11586openalex-snapshot
Filamentous bacteria transport electrons over centimetre distances
inferredcites →https://doi.org/10.1038/nature12033openalex-snapshot
Predominant archaea in marine sediments degrade detrital proteins
inferredcites →https://doi.org/10.1038/nature14447openalex-snapshot
Complex archaea that bridge the gap between prokaryotes and eukaryotes
inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1073/pnas.0600035103openalex-snapshot
Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru
inferredcites →https://doi.org/10.1073/pnas.0605127103openalex-snapshot
Microbial diversity in the deep sea and the underexplored “rare biosphere”
inferredcites →https://doi.org/10.1093/bioinformatics/btp636openalex-snapshot
PyNAST: a flexible tool for aligning sequences to a template alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btu494openalex-snapshot
STAMP: statistical analysis of taxonomic and functional profiles
inferredcites →https://doi.org/10.1093/femsec/fiu025openalex-snapshot
Archaeal community diversity and abundance changes along a natural salinity gradient in estuarine sediments
inferredcites →https://doi.org/10.1093/nar/gkm864openalex-snapshot
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
inferredcites →https://doi.org/10.1093/nar/gkt1209openalex-snapshot
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
inferredcites →https://doi.org/10.1111/1462-2920.12133openalex-snapshot
Core sediment bacteria drive community response to anthropogenic contamination over multiple environmental gradients
inferredcites →https://doi.org/10.1111/1462-2920.12659openalex-snapshot
Environmental controls on intragroup diversity of the uncultured benthic archaea of the miscellaneous C renarchaeotal group lineage naturally enriched in anoxic sediments of the W hite O ak R iver estuary ( N orth C arolina, USA )
inferredcites →https://doi.org/10.1111/1462-2920.13142openalex-snapshot
Genomic evidence for distinct carbon substrate preferences and ecological niches of B athyarchaeota in estuarine sediments
inferredcites →https://doi.org/10.1111/1574-6941.12106openalex-snapshot
Contrasting relationships between biogeochemistry and prokaryotic diversity depth profiles along an estuarine sediment gradient
inferredcites →https://doi.org/10.1111/1574-6941.12225openalex-snapshot
Changes in free-living bacterial community diversity reflect the magnitude of environmental variability
inferredcites →https://doi.org/10.1111/1758-2229.12296openalex-snapshot
Uncultured D esulfobacteraceae and C renarchaeotal group C 3 incorporate 13 C ‐acetate in coastal marine sediment
inferredcites →https://doi.org/10.1111/gbi.12142openalex-snapshot
Changes in northern Gulf of Mexico sediment bacterial and archaeal communities exposed to hypoxia
inferredcites →https://doi.org/10.1111/j.1461-0248.2006.00926.xopenalex-snapshot
Multivariate dispersion as a measure of beta diversity
inferredcites →https://doi.org/10.1111/j.1574-6941.2009.00772.xopenalex-snapshot
Bacterial diversity of water and sediment in the Changjiang estuary and coastal area of the East China Sea
inferredcites →https://doi.org/10.1111/j.1574-6941.2011.01109.xopenalex-snapshot
Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions
inferredcites →https://doi.org/10.1111/maec.12411openalex-snapshot
Sediment depth and habitat as predictors of the diversity and composition of sediment bacterial communities in an inter‐tidal estuarine environment
inferredcites →https://doi.org/10.1111/mec.13709openalex-snapshot
Metabarcoding reveals environmental factors influencing spatio‐temporal variation in pelagic micro‐eukaryotes
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.01478-10openalex-snapshot
Cultivation of Autotrophic Ammonia-Oxidizing Archaea from Marine Sediments in Coculture with Sulfur-Oxidizing Bacteria
inferredcites →https://doi.org/10.1128/aem.02692-07openalex-snapshot
Characterization of Nitrifying, Denitrifying, and Overall Bacterial Communities in Permeable Marine Sediments of the Northeastern Gulf of Mexico
inferredcites →https://doi.org/10.1128/aem.03731-13openalex-snapshot
Biogeography of the Sediment Bacterial Community Responds to a Nitrogen Pollution Gradient in the East China Sea
inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
inferredcites →https://doi.org/10.13140/rg.2.1.3920.0481openalex-snapshot
Holm-Bonferroni Sequential Correction: An EXCEL Calculator - Ver. 1.2
inferredcites →https://doi.org/10.1371/journal.pgen.1000255openalex-snapshot
Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
inferredcites →https://doi.org/10.1371/journal.pone.0074265openalex-snapshot
Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling
inferredcites →https://doi.org/10.1371/journal.pone.0130116openalex-snapshot
The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation
inferredcites →https://doi.org/10.2136/sssabookser5.3.c34openalex-snapshot
Total Carbon, Organic Carbon, and Organic Matter
inferredcites →https://doi.org/10.2307/1352937openalex-snapshot
Biogeochemistry of Gulf of Mexico Estuaries
inferredcites →https://doi.org/10.3354/meps10783openalex-snapshot
Benthic nutrient fluxes and limited denitrification in a sub-tropical groundwater-influenced coastal lagoon
inferredcites →https://doi.org/10.5194/bg-6-2063-2009openalex-snapshot
Effects of natural and human-induced hypoxia on coastal benthos

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4045863openalex-extracted
Authomicrobial Community Assembly and Co-Occurrence Relationship in the Sediments of the River-Dominated Estuary and the Adjacent Shelfr Statement
inferred← citeshttps://doi.org/10.1016/j.ecss.2019.106305openalex-snapshot
Role of depositional dynamics and riverine input in shaping microbial benthic community structure of Po prodelta system (NW Adriatic, Italy)
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