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Comparison of microsatellites and SNPs for pedigree analysis in the Pacific oyster Crassostrea gigas

https://doi.org/10.1007/s10499-017-0127-0

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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SNP Genotyping Using the Sequenom MassARRAY iPLEX Platform

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High-resolution DNA melting analysis: advancements and limitations

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Inheritance of 15 microsatellites in the Pacific oyster Crassostrea gigas: segregation and null allele identification for linkage analysis

inferredcites →https://doi.org/10.1007/s10126-002-0104-zopenalex-snapshot

Development of Novel Microsatellite DNA Markers from the Pacific Oyster Crassostrea gigas

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Multiplex microsatellite PCR sets for parentage assignment of grass carp (Ctenopharyngodon idella)

inferredcites →https://doi.org/10.1007/s10499-015-9947-yopenalex-snapshot

Parentage determination of yellow catfish (Pelteobagrus Fulvidraco) based on microsatellite DNA markers

inferredcites →https://doi.org/10.1007/s11802-017-3121-2openalex-snapshot

Development of genomic microsatellite multiplex PCR using dye-labeled universal primer and its validation in pedigree analysis of Pacific oyster (Crassostrea gigas)

inferredcites →https://doi.org/10.1007/s13258-013-0140-2openalex-snapshot

Comparative genetic diversity of wild and hatchery-produced Pacific oyster (Crassostrea gigas) populations in Korea using multiplex PCR assays with nine polymorphic microsatellite markers

inferredcites →https://doi.org/10.1016/0044-8486(95)01109-9openalex-snapshot

DNA fingerprint based analysis of paternal and maternal effects on offspring growth and survival in communally reared rainbow trout

inferredcites →https://doi.org/10.1016/j.aquaculture.2006.05.030openalex-snapshot

Genetic variability assessed by microsatellites in cultured populations of the Pacific oyster (Crassostrea gigas) in China

inferredcites →https://doi.org/10.1016/j.aquaculture.2007.08.020openalex-snapshot

A microsatellite marker tool for parentage assessment in gilthead seabream (Sparus aurata)

inferredcites →https://doi.org/10.1016/j.aquaculture.2010.09.037openalex-snapshot

Development of four EST-SSR multiplex PCRs in the Pacific oyster (Crassostrea gigas) and their validation in parentage assignment

inferredcites →https://doi.org/10.1016/j.aquaculture.2011.01.043openalex-snapshot

From theory to practice: Empirical evaluation of the assignment power of marker sets for pedigree analysis in fish breeding

inferredcites →https://doi.org/10.1016/j.aquaculture.2013.05.037openalex-snapshot

Comparative assessment of genomic SSR, EST–SSR and EST–SNP markers for evaluation of the genetic diversity of wild and cultured Pacific oyster, Crassostrea gigas Thunberg

inferredcites →https://doi.org/10.1016/j.tpb.2005.11.003openalex-snapshot

Informativeness of genetic markers for pairwise relationship and relatedness inference

inferredcites →https://doi.org/10.1016/s0168-9525(00)02139-9openalex-snapshot

Microsatellite mutations in the germline:

inferredcites →https://doi.org/10.1017/s0016672310000248openalex-snapshot

Variance in the reproductive success of flat oysterOstrea edulisL. assessed by parentage analyses in natural and experimental conditions

inferredcites →https://doi.org/10.1038/hdy.2010.36openalex-snapshot

Comparative genomic analysis reveals species-dependent complexities that explain difficulties with microsatellite marker development in molluscs

inferredcites →https://doi.org/10.1038/sj.hdy.6800545openalex-snapshot

Microsatellite null alleles in parentage analysis

inferredcites →https://doi.org/10.1046/j.1365-294x.2003.01790.xopenalex-snapshot

Prospects for inferring pairwise relationships with single nucleotide polymorphisms

inferredcites →https://doi.org/10.1093/jhered/esq123openalex-snapshot

Correction Method for Null Alleles in Species with Variable Microsatellite Flanking Regions, A Case Study of the Black-Lipped Pearl Oyster Pinctada margaritifera

inferredcites →https://doi.org/10.1098/rspb.2007.1531openalex-snapshot

Wild pedigrees: the way forward

inferredcites →https://doi.org/10.1111/1755-0998.12230openalex-snapshot

Development of SNP ‐genotyping arrays in two shellfish species

inferredcites →https://doi.org/10.1111/are.12329openalex-snapshot

A molecular tool for parentage analysis in the Mediterranean mussel (Mytilus galloprovincialis)

inferredcites →https://doi.org/10.1111/j.1365-2052.2005.01369.xopenalex-snapshot

Eight microsatellite loci for the Pacific oyster Crassostrea gigas

inferredcites →https://doi.org/10.1111/j.1365-2052.2008.01728.xopenalex-snapshot

Discovery and evaluation of single nucleotide polymorphisms (SNPs) for Haliotis midae: a targeted EST approach

inferredcites →https://doi.org/10.1111/j.1365-2052.2009.01949.xopenalex-snapshot

Characterization of 20 single nucleotide polymorphism markers in the Pacific oyster (Crassostrea gigas)

inferredcites →https://doi.org/10.1111/j.1365-2109.2004.01208.xopenalex-snapshot

A combined microsatellite multiplexing and boiling DNA extraction method for high-throughput parentage analyses in the Pacific oyster (Crassostrea gigas)

inferredcites →https://doi.org/10.1111/j.1365-2109.2010.02550.xopenalex-snapshot

Characterization of single-nucleotide polymorphism markers in the Mediterranean mussel,Mytilus galloprovincialis

inferredcites →https://doi.org/10.1111/j.1365-2109.2012.03243.xopenalex-snapshot

Comparison of microsatellite and SNP DNA markers for pedigree assignment in Black Tiger shrimp,Penaeus monodon

inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02159.xopenalex-snapshot

Single nucleotide polymorphism (SNP) discovery in mammals: a targeted‐gene approach

inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03089.xopenalex-snapshot

Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment

inferredcites →https://doi.org/10.1111/j.1471-8286.2004.00684.xopenalex-snapshot

micro ‐ checker : software for identifying and correcting genotyping errors in microsatellite data

inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01931.xopenalex-snapshot

genepop ’007: a complete re‐implementation of the genepop software for Windows and Linux

inferredcites →https://doi.org/10.1111/j.1749-7345.2011.00486.xopenalex-snapshot

The First Set of EST‐derived Single Nucleotide Polymorphism Markers for Japanese Scallop, Patinopecten yessoensis

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02943.xopenalex-snapshot

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02961.xopenalex-snapshot

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02978.xopenalex-snapshot

Assembling a dual purpose TaqMan‐based panel of single‐nucleotide polymorphism markers in rainbow trout and steelhead (Oncorhynchus mykiss) for association mapping and population genetics analysis

inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03014.xopenalex-snapshot

Current trends in microsatellite genotyping

inferredcites →https://doi.org/10.1111/jwas.12044openalex-snapshot

Development and Validation of Single‐nucleotide Polymorphism Markers in the Pacific Oyster, Crassostrea gigas, Using High‐resolution Melting Analysis

inferredcites →https://doi.org/10.1186/1297-9686-34-3-275openalex-snapshot

A review on SNP and other types of molecular markers and their use in animal genetics

inferredcites →https://doi.org/10.1186/1297-9686-44-36openalex-snapshot

An accurate formula to calculate exclusion power of marker sets in parentage assignment

inferredcites →https://doi.org/10.1534/genetics.105.048074openalex-snapshot

The Power of Single-Nucleotide Polymorphisms for Large-Scale Parentage Inference

inferredcites →https://doi.org/10.1590/s1415-47572013000200008openalex-snapshot

Comparison of the effectiveness of microsatellites and SNP panels for genetic identification, traceability and assessment of parentage in an inbred Angus herd

inferredcites →https://doi.org/10.2983/035.031.0303openalex-snapshot

Genetic Diversity of Cultured, Naturalized, and Native Pacific Oysters,Crassostrea Gigas, Determined from Multiplexed Microsatellite Markers

inferredcites →https://doi.org/10.3389/fgene.2014.00432openalex-snapshot

Parentage assignment with genomic markers: a major advance for understanding and exploiting genetic variation of quantitative traits in farmed aquatic animals

inferredcites →https://doi.org/10.3390/ijms12084836openalex-snapshot

Genetic Characterization of Five Hatchery Populations of the Pacific Abalone (Haliotis discus hannai) Using Microsatellite Markers

inferredcites →https://doi.org/10.4060/cd8357enopenalex-snapshot

The State of World Fisheries and Aquaculture 2026

inferredcites →https://doi.org/10.4238/2015.february.13.15openalex-snapshot

Effectiveness of microsatellite and single nucleotide polymorphism markers for parentage analysis in European domestic pigs

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Pedigree Reconstruction Based on Target Sequencing in Pacific White Shrimp Litopeneaus Vannamei

inferred← citeshttps://doi.org/10.1002/ece3.11102openalex-snapshot

Influence of molecular marker type on estimating effective population size and other genetic parameters in a critically endangered parrot

inferred← citeshttps://doi.org/10.1002/ece3.8250openalex-snapshot

Waste not, want not: Microsatellites remain an economical and informative technology for conservation genetics

inferred← citeshttps://doi.org/10.1007/s12686-020-01147-7openalex-snapshot

Comparative analysis of microsatellite and SNP markers for parentage testing in the golden snub-nosed monkey (Rhinopithecus roxellana)

inferred← citeshttps://doi.org/10.1016/j.aqrep.2021.100746openalex-snapshot

Development and validation of a SNP-based genotyping tool for pedigree establishment in Australian greenlip abalone Haliotis laevigata Donovan, 1808

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2018.03.006openalex-snapshot

Transcriptome based SNP discovery and validation for parentage assignment in hatchery progeny of the European abalone Haliotis tuberculata

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2018.09.022openalex-snapshot

Effectiveness of SNPs for parentage and sibship assessment in polygamous yellowtail kingfish Seriola lalandi

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738890openalex-snapshot

Development of a global SNP resource for diversity, provenance, and parentage analyses on the Indo-Pacific giant black tiger shrimp (Penaeus monodon)

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741375openalex-snapshot

Pedigree reconstruction based on target sequencing in Pacific white shrimp Litopenaeus vannamei

inferred← citeshttps://doi.org/10.1111/jwas.12650openalex-snapshot

Characteristic analysis of simple sequence repeats in the ridgetail white prawn Exopalaemon carinicauda genome and its application in parentage assignment

inferred← citeshttps://doi.org/10.1155/are/3724454openalex-snapshot

Potential Genomic Resources and Their Utilization in Edible Oysters

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A high-density exome capture genotype-by-sequencing panel for forestry breeding in Pinus radiata

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Gene flow from Fraxinus cultivars into natural stands of Fraxinus pennsylvanica occurs range-wide, is regionally extensive, and is associated with a loss of allele richness

inferred← citeshttps://doi.org/10.3389/fvets.2020.579840openalex-snapshot

Potential for Genetic Improvement of Resistance to Perkinsus olseni in the Manila Clam, Ruditapes philippinarum, Using DNA Parentage Assignment and Mass Spawning

inferred← citeshttps://doi.org/10.3390/ijms27114665openalex-snapshot

Development and Applications of a 1K SNP Panel for Whiteleg Shrimp: From Pedigree Reconstruction to Genomic Selection

inferred← citeshttps://doi.org/10.70675/12f4d23eze28fz49f9z86faz2a6cf38b847bopenalex-snapshot

Mise en place de la sélection génomique chez l’huître creuse Crassostrea gigas

inferred← citeshttps://doi.org/10.70675/43f89a4azc5e5z4649zafecz0b22d08ec983openalex-snapshot

Development of genomic tools in the Manila clam, Ruditapes philippinarum, to investigate resistance to major pathogens and potential selection for aquaculture

inferred← citeshttps://doi.org/10.70675/dd6ec9bez4c34z487eza898zd12a14c665e0openalex-snapshot

Mise en place d'un plan de sélection génétique pour l'ormeau européen Haliotis tuberculata

inferred← citeshttps://doi.org/10.9734/ajfar/2024/v26i3747openalex-snapshot

Molecular Parentage Analysis in Aquaculture: Principles, Applications, and Challenges: A Review

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.