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Experimental alteration of DNA methylation affects the phenotypic plasticity of ecologically relevant traits in Arabidopsis thaliana

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Generalized Linear Models
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Generalized Linear Models
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DNA hypomethylation in 5-azacytidine-induced early-flowering lines of flax
inferredcites →https://doi.org/10.1007/s00425-002-0855-9openalex-snapshot
Opposing effects of reduced DNA methylation on flowering time in Arabidopsis thaliana
inferredcites →https://doi.org/10.1007/s00438-002-0772-4openalex-snapshot
Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers
inferredcites →https://doi.org/10.1016/0092-8674(85)90192-8openalex-snapshot
Altering gene expression with 5-azacytidine
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Epialleles via DNA methylation: consequences for plant evolution
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Understanding mechanisms of novel gene expression in polyploids
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Arabidopsis thaliana and its wild relatives: a model system for ecology and evolution
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Epigenetic phenomena and the evolution of plant allopolyploids
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An epigenetic mutation responsible for natural variation in floral symmetry
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Perceptions of epigenetics
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The complex language of chromatin regulation during transcription
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Inherited epigenetic variation — revisiting soft inheritance
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Epigenome dynamics: a quantitative genetics perspective
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DNA methylation, vernalization, and the initiation of flowering.
inferredcites →https://doi.org/10.1073/pnas.93.16.8449openalex-snapshot
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development.
inferredcites →https://doi.org/10.1073/pnas.95.10.5824openalex-snapshot
DNA methylation and the promotion of flowering by vernalization
inferredcites →https://doi.org/10.1080/03610929108830707openalex-snapshot
Asymptotic test statistics for coefficients of variation
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Epigenetics and its Implications for Plant Biology. 1. The Epigenetic Network in Plants
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The Control of Natural Variation in Cytosine Methylation in Arabidopsis
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inferredcites →https://doi.org/10.1093/jhered/esj036openalex-snapshot
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Infraspecific DNA Methylation Polymorphism in Cotton (Gossypium hirsutum L.)
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Induction of flowering by 5‐azacytidine in some plant species: relationship between the stability of photoperiodically induced flowering and flower‐inducing effect of DNA demethylation
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Epigenetics for ecologists
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Epigenetics and plant evolution
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Evaluating the potential of using 5-azacytidine as an epimutagen
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Evaluating the potential of using 5-azacytidine as an epimutagen
inferredcites →https://doi.org/10.1139/g94-001openalex-snapshot
Heritable effects of 5-azacytidine treatments on the growth and development of flax (Linum usitatissimum) genotrophs and genotypes
inferredcites →https://doi.org/10.1146/annurev.arplant.55.031903.141605openalex-snapshot
NATURALLY OCCURRING GENETIC VARIATION IN ARABIDOPSIS THALIANA
inferredcites →https://doi.org/10.1146/annurev.arplant.58.032806.103835openalex-snapshot
Genetic and Epigenetic Mechanisms for Gene Expression and Phenotypic Variation in Plant Polyploids
inferredcites →https://doi.org/10.1146/annurev.ecolsys.27.1.237openalex-snapshot
EVOLUTIONARY SIGNIFICANCE OF LOCAL GENETIC DIFFERENTIATION IN PLANTS
inferredcites →https://doi.org/10.1371/journal.pbio.0050174openalex-snapshot
Epigenetic Natural Variation in Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pgen.1000032openalex-snapshot
Global Analysis of Genetic, Epigenetic and Transcriptional Polymorphisms in Arabidopsis thaliana Using Whole Genome Tiling Arrays
inferredcites →https://doi.org/10.1371/journal.pgen.1000530openalex-snapshot
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The ecodist Package for Dissimilarity-based Analysis of Ecological Data
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Evolution in Four Dimensions

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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DNA Methylation as a Mechanism of Nutritional Plasticity: Limited Support From Horned Beetles
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Epigenetic Flexibility Underlying Phenotypic Plasticity
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Evolutionary Significance of Epigenetic Variation
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Integrating Phenotypic Plasticity Within an Ecological Genomics Framework: Recent Insights from the Genomics, Evolution, Ecology, and Fitness of Plasticity
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Changes in micro RNA expression in a wild tuber-bearing Solanum species induced by 5-Azacytidine treatment
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Natural epigenetic variation in the female great roundleaf bat (Hipposideros armiger) populations
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Regulation of plant epigenetic memory in response to cold and heat stress: towards climate resilient agriculture
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Phenotypic plasticity accounts for most of the variation in leaf manganese concentrations in Phytolacca americana growing in manganese-contaminated environments
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Effect of DNA Methyltransferase Inhibitor on Flowering in Litchi Chinensis by Transcriptome and Proteome
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Sugarcane (Saccharum spp. hybrids) biotechnology research in South Africa
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5-Azacytidine as a tool to induce somaclonal variants with useful traits in sugarcane (Saccharum spp.)
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Stochastic developmental variation, an epigenetic source of phenotypic diversity with far-reaching biological consequences
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Extensive reprogramming of cytosine methylation in Oryza allotetraploids
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Transgenerational Inheritance in Plants of Acquired Defence Against Biotic and Abiotic Stresses: Implications and Applications
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Disentangling the environmentally induced and stochastic developmental components of phenotypic variation
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Biosafety and biosecurity consideration in CRISPR-Cas
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Epigenetics and Adaptation
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Variation of cytosine methylation in response to water availability in two contrasting growth types of an amphibious plant Alternanthera philoxeroides
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MSAP-based analysis of DNA methylation diversity in tobacco exposed to different environments and at different development phases
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DNA demethylation during Chrysanthemum floral transition following short-day treatment
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The maternal environment determines the timing of germination in Pinus pinaster
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Variation in DNA methylation and response to short-term herbivory in Thlaspi arvense
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Natural epialleles of Arabidopsis SUPERMAN display superwoman phenotypes
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Adaptational significance of variations in DNA methylation in clonal plant Hierochloe glabra (Poaceae) in heterogeneous habitats
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Phenotypic plasticity in plant defense across life stages: Inducibility, transgenerational induction, and transgenerational priming in wild radish
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Diversity of parental environments increases phenotypic variation inArabidopsispopulations more than genetic diversity but similarly affects productivity
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Parental methylation mediates how progeny respond to environments of parents and of progeny themselves
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Epigenetic variation in plant responses to defence hormones
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Epigenetic Potential as a Mechanism of Phenotypic Plasticity in Vertebrate Range Expansions
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Trans-generational effects in the clonal invader Alternanthera philoxeroides
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Winter-dormant shoot apical meristem in poplar trees shows environmental epigenetic memory
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EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics
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Variation inICE1Methylation Primarily Determines Phenotypic Variation in Freezing Tolerance inArabidopsis thaliana
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DNA methylation mediates genetic variation for adaptive transgenerational plasticity
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EPIGENETIC VARIATION IN ASEXUALLY REPRODUCING ORGANISMS
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PHENOTYPIC PLASTICITY AND EPIGENETIC MARKING: AN ASSESSMENT OF EVIDENCE FOR GENETIC ACCOMMODATION
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A truly ecological epigenetics study
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Jack of all nectars, master of most: DNA methylation and the epigenetic basis of niche width in a flower‐living yeast
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Within‐genotype epigenetic variation enables broad niche width in a flower living yeast
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inferred← citeshttps://doi.org/10.1111/jeb.14033openalex-snapshot
Epigenetics and reproductive isolation: a commentary on Westram et al., 2022
inferred← citeshttps://doi.org/10.1111/mec.12833openalex-snapshot
Fine‐scale population epigenetic structure in relation to gastrointestinal parasite load in red grouse ( Lagopus lagopus scotica )
inferred← citeshttps://doi.org/10.1111/mec.13329openalex-snapshot
The epigenetic footprint of poleward range‐expanding plants in apomictic dandelions
inferred← citeshttps://doi.org/10.1111/mec.13502openalex-snapshot
Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage
inferred← citeshttps://doi.org/10.1111/mec.13522openalex-snapshot
Genetic and epigenetic differences associated with environmental gradients in replicate populations of two salt marsh perennials
inferred← citeshttps://doi.org/10.1111/mec.15722openalex-snapshot
Manipulation of cytosine methylation does not remove latitudinal clines in two invasive goldenrod species in Central Europe
inferred← citeshttps://doi.org/10.1111/mec.17246openalex-snapshot
Phenotypic plasticity for improved light harvesting, in tandem with methylome repatterning in reef‐building corals
inferred← citeshttps://doi.org/10.1111/mec.17774openalex-snapshot
Rapid Neural DNA Methylation Responses to Predation Stress in Trinidadian Guppies
inferred← citeshttps://doi.org/10.1111/mec.17831openalex-snapshot
Developmental Behavioural Plasticity and DNA Methylation Patterns in Response to Predation Stress in Trinidadian Guppies
inferred← citeshttps://doi.org/10.1111/nph.12010openalex-snapshot
Epigenetic variation creates potential for evolution of plant phenotypic plasticity
inferred← citeshttps://doi.org/10.1111/nph.17257openalex-snapshot
Lifetime genealogical divergence within plants leads to epigenetic mosaicism in the shrub Lavandula latifolia (Lamiaceae)
inferred← citeshttps://doi.org/10.1111/oik.05591openalex-snapshot
DNA methylation as a possible mechanism affecting ability of natural populations to adapt to changing climate
inferred← citeshttps://doi.org/10.1111/oik.10993openalex-snapshot
Parental environment nitrogen and phosphorus availability affects offspring traits of eight annual plant species
inferred← citeshttps://doi.org/10.1111/pbi.12919openalex-snapshot
An epigenetic breeding system in soybean for increased yield and stability
inferred← citeshttps://doi.org/10.1111/plb.13001openalex-snapshot
Effects of parental light environment on growth and morphological responses of clonal offspring
inferred← citeshttps://doi.org/10.1111/plb.70003openalex-snapshot
Unveiling the hidden codes: a review of variability and ecological epigenetics after 20 years of studies on potato
inferred← citeshttps://doi.org/10.1111/plb.70110openalex-snapshot
A dynamic epigenetic perspective on above‐ and belowground phenotypic responses to drought: Insights from global DNA methylation in Erodium cicutarium
inferred← citeshttps://doi.org/10.1111/ppl.13162openalex-snapshot
Hypomethylation of the aquatic invasive plant,Ludwigia grandiflorasubsp.hexapetalamimics the adaptive transition into the terrestrial morphotype
inferred← citeshttps://doi.org/10.1111/ppl.13313openalex-snapshot
Root‐omics for drought tolerance in cool‐season grain legumes
inferred← citeshttps://doi.org/10.1111/rec.12458openalex-snapshot
Eco‐evolutionary dynamics in restored communities and ecosystems
inferred← citeshttps://doi.org/10.1155/2016/4395153openalex-snapshot
Differential Methylation of Genomic Regions Associated with Heteroblasty Detected by M&M Algorithm in the Nonmodel SpeciesEucalyptus globulusLabill.
inferred← citeshttps://doi.org/10.1155/2018/7836845openalex-snapshot
Experimental Treatment with a Hypomethylating Agent Alters Life History Traits and Fitness in Brassica rapa
inferred← citeshttps://doi.org/10.11606/d.76.2021.tde-15122021-110954openalex-snapshot
Métodos computacionais para detecção de plasticidade vegetal em >i /i< causada por agentes tóxicos
inferred← citeshttps://doi.org/10.11606/t.59.2016.tde-05112015-100804openalex-snapshot
Da teoria sintética da evolução à síntese estendida: o papel da plasticidade fenotípica
inferred← citeshttps://doi.org/10.1186/1471-2156-12-86openalex-snapshot
Methylation changes associated with early maturation stages in the Atlantic salmon
inferred← citeshttps://doi.org/10.1186/1471-2164-15-1109openalex-snapshot
Bimodal signatures of germline methylation are linked with gene expression plasticity in the coral Acropora millepora
inferred← citeshttps://doi.org/10.1186/1471-2229-12-193openalex-snapshot
A Hypomethylated population of Brassica rapa for forward and reverse Epi-genetics
inferred← citeshttps://doi.org/10.1186/s12864-022-08535-3openalex-snapshot
Methylome and transcriptome analyses of three different degrees of albinism in apple seedlings
inferred← citeshttps://doi.org/10.1186/s12870-016-0936-8openalex-snapshot
Quantitative trait variation is revealed in a novel hypomethylated population of woodland strawberry (Fragaria vesca)
inferred← citeshttps://doi.org/10.1186/s12870-020-2325-6openalex-snapshot
Effect of arsenic stress on 5-methylcytosine, photosynthetic parameters and nutrient content in arsenic hyperaccumulator Pteris cretica (L.) var. Albo-lineata
inferred← citeshttps://doi.org/10.1371/journal.pone.0038605openalex-snapshot
Transgenerational Effects of Stress Exposure on Offspring Phenotypes in Apomictic Dandelion
inferred← citeshttps://doi.org/10.1371/journal.pone.0086049openalex-snapshot
Genetic and DNA Methylation Changes in Cotton (Gossypium) Genotypes and Tissues
inferred← citeshttps://doi.org/10.1371/journal.pone.0121864openalex-snapshot
DNA Methylation and Transcriptomic Changes in Response to Different Lights and Stresses in 7B-1 Male-Sterile Tomato
inferred← citeshttps://doi.org/10.1371/journal.pone.0151566openalex-snapshot
Effects of Multi-Generational Stress Exposure and Offspring Environment on the Expression and Persistence of Transgenerational Effects in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1371/journal.pone.0166646openalex-snapshot
Herbivore-Induced DNA Demethylation Changes Floral Signalling and Attractiveness to Pollinators in Brassica rapa
inferred← citeshttps://doi.org/10.1371/journal.pone.0252227openalex-snapshot
Methylation patterns at fledging predict delayed dispersal in a cooperatively breeding bird
inferred← citeshttps://doi.org/10.1534/g3.116.033860openalex-snapshot
Epigenetic Control of Phenotypic Plasticity in the Filamentous Fungus Neurospora crassa
inferred← citeshttps://doi.org/10.1534/g3.119.400770openalex-snapshot
Experimental DNA Demethylation Associates with Changes in Growth and Gene Expression of Oak Tree Seedlings
inferred← citeshttps://doi.org/10.1534/genetics.111.127118openalex-snapshot
Quantitative Epigenetics Through Epigenomic Perturbation of Isogenic Lines
inferred← citeshttps://doi.org/10.15835/nbha47311373openalex-snapshot
Effect of Different DNA Demethylating Agents on In vitro Cultures of Peach Rootstock GF 677
inferred← citeshttps://doi.org/10.18174/386851openalex-snapshot
Epigenetic inheritance in apomictic dandelions : stress-induced and heritable modifications in DNA methylation and small RNA
inferred← citeshttps://doi.org/10.20868/upm.thesis.57423openalex-snapshot
Control epigenético de la infección viral en plantas
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1993330/v1openalex-snapshot
Involvement of DNA methylation in regulating the growth of Arabidopsis thaliana seedling exposed to lanthanum(III) at environmental relevant levels
inferred← citeshttps://doi.org/10.2135/cropsci2016.07.0002inopenalex-snapshot
Introduction to a Special Issue on Genotype by Environment Interaction
inferred← citeshttps://doi.org/10.23889/suthesis.55248openalex-snapshot
Relative roles of genetic and epigenetic variation on the ecology and evolution of mangrove killifishes (Kryptolebias spp.)
inferred← citeshttps://doi.org/10.23889/suthesis.67285openalex-snapshot
Effect of early rearing conditions on the behaviour and microbiome of fish with low genetic diversity
inferred← citeshttps://doi.org/10.23902/trkjnat.1085192openalex-snapshot
In vitro EVALUATIONS OF ANTIOXIDANT, ANTIMICROBIAL AND ANTICANCER POTENTIAL OF Phytolacca americana L. (POKEWEED) SEED EXTRACT
inferred← citeshttps://doi.org/10.25772/k1zm-mv22openalex-snapshot
Genome wide epigenetic analyses of Araptus attenuatus, a bark beetle
inferred← citeshttps://doi.org/10.3389/fcell.2022.1020958openalex-snapshot
Epigenetic variation: A major player in facilitating plant fitness under changing environmental conditions
inferred← citeshttps://doi.org/10.3389/fgene.2022.819941openalex-snapshot
Unravelling the Role of Epigenetic Modifications in Development and Reproduction of Angiosperms: A Critical Appraisal
inferred← citeshttps://doi.org/10.3389/fgene.2022.874648openalex-snapshot
Moving Beyond DNA Sequence to Improve Plant Stress Responses
inferred← citeshttps://doi.org/10.3389/fmars.2019.00788openalex-snapshot
Changes in Genome-Wide Methylation and Gene Expression in Response to Future pCO2 Extremes in the Antarctic Pteropod Limacina helicina antarctica
inferred← citeshttps://doi.org/10.3389/fmars.2022.982234openalex-snapshot
Role of DNA methylation in ecophysiological responses to salinity in natural populations of Phragmites australis from coastal and inland habitats
inferred← citeshttps://doi.org/10.3389/fmicb.2019.01609openalex-snapshot
Constraining Evolution of Alternaria alternata Resistance to a Demethylation Inhibitor (DMI) Fungicide Difenoconazole
inferred← citeshttps://doi.org/10.3389/fpls.2016.01768openalex-snapshot
Stable Epigenetic Variants Selected from an Induced Hypomethylated Fragaria vesca Population
inferred← citeshttps://doi.org/10.3389/fpls.2017.01178openalex-snapshot
DNA Methylation Influences Chlorogenic Acid Biosynthesis in Lonicera japonica by Mediating LjbZIP8 to Regulate Phenylalanine Ammonia-Lyase 2 Expression
inferred← citeshttps://doi.org/10.3389/fpls.2018.01251openalex-snapshot
Context-Dependent Developmental Effects of Parental Shade Versus Sun Are Mediated by DNA Methylation
inferred← citeshttps://doi.org/10.3389/fpls.2018.01851openalex-snapshot
Transient Stability of Epigenetic Population Differentiation in a Clonal Invader
inferred← citeshttps://doi.org/10.3389/fpls.2020.00435openalex-snapshot
Effects of Temperature Treatments on Cytosine-Methylation Profiles of Diploid and Autotetraploid Plants of the Alpine Species Ranunculus kuepferi (Ranunculaceae)
inferred← citeshttps://doi.org/10.3389/fpls.2021.617815openalex-snapshot
Transgenerational Plasticity in Flower Color Induced by Caterpillars
inferred← citeshttps://doi.org/10.3389/fpls.2022.827166openalex-snapshot
DNA Methylation Can Mediate Local Adaptation and Response to Climate Change in the Clonal Plant Fragaria vesca: Evidence From a European-Scale Reciprocal Transplant Experiment
inferred← citeshttps://doi.org/10.3389/fpls.2022.888391openalex-snapshot
Epigenetic and Phenotypic Responses to Experimental Climate Change of Native and Invasive Carpobrotus edulis
inferred← citeshttps://doi.org/10.3389/fpls.2022.890309openalex-snapshot
Clonal Parental Effects on Offspring Growth of Different Vegetative Generations in the Aquatic Plant Pistia stratiotes
inferred← citeshttps://doi.org/10.3389/fpls.2022.924001openalex-snapshot
Roles of clonal parental effects in regulating interspecific competition between two floating plants
inferred← citeshttps://doi.org/10.3389/fpls.2023.1213311openalex-snapshot
Major transcriptomic differences are induced by warmer temperature conditions experienced during asexual and sexual reproduction in Fragaria vesca ecotypes
inferred← citeshttps://doi.org/10.3390/agriculture13071333openalex-snapshot
Effects of Acetaminophen Contamination on 5-Methylcytosine Content in Zea mays and Plant Physiological Parameters
inferred← citeshttps://doi.org/10.3390/agronomy14092105openalex-snapshot
Epigenetic Regulation for Heat Stress Adaptation in Plants: New Horizons for Crop Improvement under Climate Change
inferred← citeshttps://doi.org/10.3390/biology9100315openalex-snapshot
Phenotypic Responses, Reproduction Mode and Epigenetic Patterns under Temperature Treatments in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
inferred← citeshttps://doi.org/10.3390/epigenomes1030016openalex-snapshot
Tissue-Specific Response to Experimental Demethylation at Seed Germination in the Non-Model Herb Erodium cicutarium
inferred← citeshttps://doi.org/10.3390/epigenomes2020012openalex-snapshot
Salt Stress Induces Non-CG Methylation in Coding Regions of Barley Seedlings (Hordeum vulgare)
inferred← citeshttps://doi.org/10.3390/f12050569openalex-snapshot
Genome-Wide Variation in DNA Methylation Predicts Variation in Leaf Traits in an Ecosystem-Foundational Oak Species
inferred← citeshttps://doi.org/10.3390/genes12111818openalex-snapshot
Gene Expression Profiles Suggest a Better Cold Acclimation of Polyploids in the Alpine Species Ranunculus kuepferi (Ranunculaceae)
inferred← citeshttps://doi.org/10.3390/ijms20122971openalex-snapshot
Towards Exploitation of Adaptive Traits for Climate-Resilient Smart Pulses
inferred← citeshttps://doi.org/10.3390/ijms24065407openalex-snapshot
Epigenetic Changes Occurring in Plant Inbreeding
inferred← citeshttps://doi.org/10.3390/toxics11070568openalex-snapshot
Effect of Arsenic Soil Contamination on Stress Response Metabolites, 5-Methylcytosine Level and CDC25 Expression in Spinach
inferred← citeshttps://doi.org/10.3410/f.717961351.793464995openalex-snapshot
Faculty Opinions recommendation of A hypomethylated population of Brassica rapa for forward and reverse epi-genetics.
inferred← citeshttps://doi.org/10.35376/10324/3543openalex-snapshot
Susceptibility of Pinus pinaster Ait. to Fusarium circinatum Nirenberg and O'Donell: variability and maternal effects
inferred← citeshttps://doi.org/10.3732/ajb.1500477openalex-snapshot
Plasticity to salinity and transgenerational effects in the nonnative shrub Baccharis halimifolia: Insights into an estuarine invasion
inferred← citeshttps://doi.org/10.3732/ajb.1500526openalex-snapshot
Stress‐induced memory alters growth of clonal offspring of white clover (Trifolium repens)
inferred← citeshttps://doi.org/10.3897/neobiota.49.33723openalex-snapshot
Genetic and epigenetic regulation of phenotypic variation in invasive plants – linking research trends towards a unified framework
inferred← citeshttps://doi.org/10.47749/t/unicamp.2021.1166650openalex-snapshot
Avaliação do manejo de população clonal de Psychotria viridis Ruiz & Pav (Rubiaceae) segundo as condições ambientais e sazonalidade
inferred← citeshttps://doi.org/10.52547/pgr.7.2.10openalex-snapshot
Study of the Effect of 5-Azacytidine as a DNA Demethylating Agent on Agronomic Traits, Androgenesis Induction via Anther Culture and DNA-Methyltransferase Gene Expression in Maize (Zea mays L.) Leaf Tissue
inferred← citeshttps://doi.org/10.53846/goediss-7494openalex-snapshot
Reproductive strategies of alpine apomictic plants under different ecological conditions
inferred← citeshttps://doi.org/10.53846/goediss-9046openalex-snapshot
Effects of cold stress on reproductive biology and epigenetic profiles of the alpine plant Ranunculus kuepferi (Ranunculaceae)
inferred← citeshttps://doi.org/10.5772/intechopen.78125openalex-snapshot
DNA Methylation Mechanism
inferred← citeshttps://doi.org/10.5772/intechopen.90886openalex-snapshot
Atlas of Age- and Tissue-Specific DNA Methylation during Early Development of Barley (Hordeum vulgare)
inferred← citeshttps://doi.org/10.6084/m9.figshare.12050919openalex-snapshot
Additional file 1 of Effect of arsenic stress on 5-methylcytosine, photosynthetic parameters and nutrient content in arsenic hyperaccumulator Pteris cretica (L.) var. Albo-lineata
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