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A critical cross-validation of high throughput structural binding prediction methods for pMHC
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Protein–ligand docking: Current status and future challenges
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Comparison between computational alanine scanning and per‐residue binding free energy decomposition for protein–protein association using MM‐GBSA: Application to the TCR‐p‐MHC complex
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GROMACS 3.0: a package for molecular simulation and trajectory analysis
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Single MHC Mutation Eliminates Enthalpy Associated with T Cell Receptor Binding
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A Structural Basis for the Selection of Dominant αβ T Cell Receptors in Antiviral Immunity
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Predicting Binding Affinities of Protein Ligands from Three-Dimensional Models: Application to Peptide Binding to Class I Major Histocompatibility Proteins
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In Silico Tools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion
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Further development and validation of empirical scoring functions for structure-based binding affinity prediction
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Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
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Covalent assembly of a soluble T cell receptor-peptide-major histocompatibility class I complex.
inferredcites →https://doi.org/10.1080/08927020802256298openalex-snapshot
Analysis of key parameters for molecular dynamics of pMHC molecules
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Predicting proteasomal cleavage sites: a comparison of available methods
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Magnitude of structural changes of the T-cell receptor binding regions determine the strength of T-cell antagonism: molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide
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A graph‐theory algorithm for rapid protein side‐chain prediction
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IRECS: A new algorithm for the selection of most probable ensembles of side‐chain conformations in protein models
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Side chain substitution benchmark for peptide/MHC interaction
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Molecular dynamics study of a complex between the human histocompatibility antigen HLA‐A2 and the IMP58‐66 nonapeptide from influenza virus matrix protein
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The meaning and use of the area under a receiver operating characteristic (ROC) curve.
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Immunoinformatics Comes of Age
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Comparing the Areas under Two or More Correlated Receiver Operating Characteristic Curves: A Nonparametric Approach
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Computational Research in T-Cell Receptor/Peptide/Major Histocompatibility Complex Interaction and Immunoinformatics
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Identification of Candidate Vaccine Antigens In Silico
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Structure-Based Prediction of Major Histocompatibility Complex (MHC) Epitopes
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Homology modeling and molecular dynamics simulations of MUC1-9/H-2Kb complex suggest novel binding interactions
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Molecular modeling of class I and II alleles of the major histocompatibility complex in Salmo salar
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Effect of secondary anchor amino acid substitutions on the immunogenic properties of an HLA-A*0201-restricted T cell epitope derived from the Trypanosoma cruzi KMP-11 protein
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T-Cell Receptor Binding Affects the Dynamics of the Peptide/MHC-I Complex
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Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations
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Current status and future challenges in T-cell receptor/peptide/MHC molecular dynamics simulations
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Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo
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Current World Literature
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Advances in Predicting and Manipulating the Immunogenicity of Biotherapeutics and Vaccines
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Prediction of MHC-Peptide Binding: A Systematic and Comprehensive Overview
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