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Systematic analysis of HD-ZIP transcription factors in sesame genome and gene expression profiling of SiHD-ZIP class I entailing drought stress responses at early seedling stage

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
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The homeobox genes ATHB12 and ATHB7encode potential regulators of growth in response to water deficit in Arabidopsis
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A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members
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Genome-wide analysis of HD-Zip genes in grape (Vitis vinifera)
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Genome-wide identification of pear HD-Zip gene family and expression patterns under stress induced by drought, salinity, and pathogen
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Homeodomain–Leucine Zipper Transcription Factors: Structural Features of These Proteins, Unique to Plants
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Protein variety and functional diversity: Swiss-Prot annotation in its biological context
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Genome-wide identification and characterization of HD-ZIP genes in potato
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Retraction notice to “STAT3-dependent TXNDC17 expression mediates Taxol resistance through inducing autophagy in human colorectal cancer cells” [GENE 584 (1) (2016) 75–82]
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iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases
inferredcites →https://doi.org/10.1016/j.plantsci.2005.04.008openalex-snapshot
The promoter of the sunflower HD-Zip protein gene Hahb4 directs tissue-specific expression and is inducible by water stress, high salt concentrations and ABA
inferredcites →https://doi.org/10.1016/j.tplants.2007.08.003openalex-snapshot
The true story of the HD-Zip family
inferredcites →https://doi.org/10.1016/j.ygeno.2018.07.009openalex-snapshot
Genomic and transcriptomic analyses of HD-Zip family transcription factors and their responses to abiotic stress in tea plant (Camellia sinensis)
inferredcites →https://doi.org/10.1016/j.ygeno.2020.03.008openalex-snapshot
Genome-wide identification and expression profiling of HD-ZIP gene family in Medicago truncatula
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Comprehensive analysis of TCR repertoire in COVID-19 using single cell sequencing
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The HD-Zip gene ATHB6 in Arabidopsis is expressed in developing leaves, roots and carpels and up-regulated by water deficit conditions
inferredcites →https://doi.org/10.1038/36285openalex-snapshot
Mutation of the mouse klotho gene leads to a syndrome resembling ageing.
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Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses
inferredcites →https://doi.org/10.1038/s41598-018-35711-xopenalex-snapshot
Physiological and proteomic analysis on long-term drought resistance of cassava (Manihot esculenta Crantz)
inferredcites →https://doi.org/10.1042/0264-6021:3410081openalex-snapshot
A monomer‒dimer equilibrium modulates the interaction of the sunflower homeodomain leucine-zipper protein Hahb-4 with DNA
inferredcites →https://doi.org/10.1080/09168451.2014.923292openalex-snapshot
A genome-wide survey of homeodomain-leucine zipper genes and analysis of cold-responsive HD-Zip I members’ expression in tomato
inferredcites →https://doi.org/10.1093/bib/bbv106openalex-snapshot
Analysis of sequencing data for probing RNA secondary structures and protein–RNA binding in studying posttranscriptional regulations
inferredcites →https://doi.org/10.1093/bioinformatics/btu817openalex-snapshot
GSDS 2.0: an upgraded gene feature visualization server
inferredcites →https://doi.org/10.1093/molbev/msp201openalex-snapshot
A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes
inferredcites →https://doi.org/10.1093/molbev/msy044openalex-snapshot
Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates
inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot
MEME SUITE: tools for motif discovery and searching
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The accessory subunit of mitochondrial DNA polymerase γ determines the DNA content of mitochondrial nucleoids in human cultured cells
inferredcites →https://doi.org/10.1093/nar/gks1067openalex-snapshot
New and continuing developments at PROSITE
inferredcites →https://doi.org/10.1093/nar/gkx922openalex-snapshot
20 years of the SMART protein domain annotation resource
inferredcites →https://doi.org/10.1093/nar/gky1100openalex-snapshot
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
inferredcites →https://doi.org/10.1093/nar/gky299openalex-snapshot
iPath3.0: interactive pathways explorer v3
inferredcites →https://doi.org/10.1093/nar/gkz304openalex-snapshot
Responsive self-assembly of tectoRNAs with loop–receptor interactions from the tetrahydrofolate (THF) riboswitch
inferredcites →https://doi.org/10.1093/pcp/pcq108openalex-snapshot
ATHB12, an ABA-Inducible Homeodomain-Leucine Zipper (HD-Zip) Protein of Arabidopsis, Negatively Regulates the Growth of the Inflorescence Stem by Decreasing the Expression of a Gibberellin 20-Oxidase Gene
inferredcites →https://doi.org/10.1093/pcp/pcu054openalex-snapshot
A Novel Maize Homeodomain–Leucine Zipper (HD-Zip) I Gene, Zmhdz10, Positively Regulates Drought and Salt Tolerance in Both Rice and Arabidopsis
inferredcites →https://doi.org/10.1093/pcp/pcu172openalex-snapshot
RNA-Seq-Based Transcriptome Profiling of Early Nitrogen Deficiency Response in Cucumber Seedlings Provides New Insight into the Putative Nitrogen Regulatory Network
inferredcites →https://doi.org/10.1093/sysbio/sys062openalex-snapshot
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
inferredcites →https://doi.org/10.1101/pdb.prot5439openalex-snapshot
Purification of RNA Using TRIzol (TRI Reagent)
inferredcites →https://doi.org/10.1104/pp.105.063461openalex-snapshot
Homeodomain Leucine Zipper Class I Genes in Arabidopsis. Expression Patterns and Phylogenetic Relationships
inferredcites →https://doi.org/10.1104/pp.105.073833openalex-snapshot
MEKHLA, a Novel Domain with Similarity to PAS Domains, Is Fused to Plant Homeodomain-Leucine Zipper III Proteins
inferredcites →https://doi.org/10.1104/pp.16.01634openalex-snapshot
MYB89 Transcription Factor Represses Seed Oil Accumulation
inferredcites →https://doi.org/10.1111/j.1467-7652.2012.00701.xopenalex-snapshot
The homologous homeodomain‐leucine zipper transcription factors HaHB1 and AtHB13 confer tolerance to drought and salinity stresses via the induction of proteins that stabilize membranes
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03733.xopenalex-snapshot
Modulation of plant growth by HD‐Zip class I and II transcription factors in response to environmental stimuli
inferredcites →https://doi.org/10.1111/pbi.13100openalex-snapshot
The genetic basis of drought tolerance in the high oil crop Sesamum indicum
inferredcites →https://doi.org/10.1155/2014/103054openalex-snapshot
Protein Sequence Classification with Improved Extreme Learning Machine Algorithms
inferredcites →https://doi.org/10.1155/2018/8457614openalex-snapshot
Genome-Wide Investigation and Expression Profiling of HD-Zip Transcription Factors in Foxtail Millet (Setaria italicaL.)
inferredcites →https://doi.org/10.1186/1471-2164-15-950openalex-snapshot
Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress
inferredcites →https://doi.org/10.1186/1471-2229-14-150openalex-snapshot
Arabidopsis AtHB7 and AtHB12evolved divergently to fine tune processes associated with growth and responses to water stress
inferredcites →https://doi.org/10.1186/gb-2004-5-6-r41openalex-snapshot
START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors
inferredcites →https://doi.org/10.1186/gb-2013-14-1-401openalex-snapshot
Genome sequencing of the important oilseed crop Sesamum indicumL
inferredcites →https://doi.org/10.1186/gb-2014-15-2-r39openalex-snapshot
Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis
inferredcites →https://doi.org/10.1186/s12864-019-6091-5openalex-snapshot
Genome-wide characterization and expression analysis of the HD-Zip gene family in response to drought and salinity stresses in sesame
inferredcites →https://doi.org/10.1186/s12870-016-0859-4openalex-snapshot
Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress
inferredcites →https://doi.org/10.1186/s12870-020-02677-wopenalex-snapshot
Genome-wide characterization and expression profiling of Eucalyptus grandis HD-Zip gene family in response to salt and temperature stress
inferredcites →https://doi.org/10.1186/s12870-020-02782-wopenalex-snapshot
Retraction Note: The specific MYB binding sites bound by TaMYB in the GAPCp2/3 promoters are involved in the drought stress response in wheat
inferredcites →https://doi.org/10.1186/s13059-014-0521-0openalex-snapshot
Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation
inferredcites →https://doi.org/10.1371/journal.pone.0028488openalex-snapshot
Systematic Analysis of Sequences and Expression Patterns of Drought-Responsive Members of the HD-Zip Gene Family in Maize
inferredcites →https://doi.org/10.1371/journal.pone.0029190openalex-snapshot
Investigation on Mycobacterium tuberculosis Diversity in China and the Origin of the Beijing Clade
inferredcites →https://doi.org/10.1371/journal.pone.0031149openalex-snapshot
Genome-Wide Identification, Evolutionary Expansion, and Expression Profile of Homeodomain-Leucine Zipper Gene Family in Poplar (Populus trichocarpa)
inferredcites →https://doi.org/10.1371/journal.pone.0052975openalex-snapshot
All-Trans-Retinoic Acid Modulates ICAM-1 N-Glycan Composition by Influencing GnT-III Levels and Inhibits Cell Adhesion and Trans-Endothelial Migration
inferredcites →https://doi.org/10.1371/journal.pone.0087156openalex-snapshot
Genome-Wide Analysis of Soybean HD-Zip Gene Family and Expression Profiling under Salinity and Drought Treatments
inferredcites →https://doi.org/10.1371/journal.pone.0123973openalex-snapshot
LINE-1 Methylation Status Correlates Significantly to Post-Therapeutic Recurrence in Stage III Colon Cancer Patients Receiving FOLFOX-4 Adjuvant Chemotherapy
inferredcites →https://doi.org/10.1371/journal.pone.0173043openalex-snapshot
Genome-wide characterization and expression profiling of HD-Zip gene family related to abiotic stress in cassava
inferredcites →https://doi.org/10.1371/journal.pone.0185409openalex-snapshot
Relating protein functional diversity to cell type number identifies genes that determine dynamic aspects of chromatin organisation as potential contributors to organismal complexity
inferredcites →https://doi.org/10.1371/journal.pone.0188252openalex-snapshot
Elastic K-means using posterior probability
inferredcites →https://doi.org/10.1385/1592598900openalex-snapshot
The Proteomics Protocols Handbook
inferredcites →https://doi.org/10.3389/fpls.2017.02118openalex-snapshot
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13
inferredcites →https://doi.org/10.3390/genes10080575openalex-snapshot
Genome-Wide Identification and Expression Analysis of HD-ZIP I Gene Subfamily in Nicotiana tabacum
inferredcites →https://doi.org/10.3390/genes11010049openalex-snapshot
Genome-Wide Association Study (GWAS) for Mesocotyl Elongation in Rice (Oryza sativa L.) under Multiple Culture Conditions
inferredcites →https://doi.org/10.3390/genes7050019openalex-snapshot
Transcriptome-Wide Survey and Expression Profile Analysis of Putative Chrysanthemum HD-Zip I and II Genes
inferredcites →https://doi.org/10.3390/genes9020070openalex-snapshot
Genome-Wide Identification and Expression Analysis of the HD-Zip Gene Family in Wheat (Triticum aestivum L.)
inferredcites →https://doi.org/10.3390/ijerph120605685openalex-snapshot
The Potential Role of Neglected and Underutilised Crop Species as Future Crops under Water Scarce Conditions in Sub-Saharan Africa
inferredcites →https://doi.org/10.4103/0973-7847.134249openalex-snapshot
Value addition in sesame: A perspective on bioactive components for enhancing utility and profitability
inferredcites →https://doi.org/10.4236/ajps.2015.67104openalex-snapshot
Growth and Yield of Sesame (Sesamum indicum L.) under the Influence of Planting Geometry and Irrigation Regimes
inferredcites →https://doi.org/10.4238/2014.april.8.8openalex-snapshot
Genome-wide analysis of the homeodomain-leucine zipper (HD-ZIP) gene family in peach (Prunus persica)
inferredcites →https://doi.org/10.4238/2014.december.19.22openalex-snapshot
Molecular cloning and characterization of the full-length Hsp90 gene from Matricaria recutita
inferredcites →https://doi.org/10.7717/peerj.7499openalex-snapshot
Genome-wide identification, characterization and expression analysis of the HD-Zip gene family in the stem development of the woody plant Prunus mume

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.5004370openalex-extracted
A Review on Yield Improvement of the Important Oilseed Sesame (Sesamum indicum L.) using Biotechnology
inferred← citeshttps://doi.org/10.1007/978-3-031-50729-8_3openalex-snapshot
Mutagenesis Breeding for Drought-Tolerance and Improvement of Oil and Seed Quality in Oilseed Crops: Case of Rapeseed and Sesame
inferred← citeshttps://doi.org/10.1007/s10725-025-01288-5openalex-snapshot
The HD-Zip transcription factor FaANL2 represses FaMYB10 to inhibit anthocyanin biosynthesis in strawberry fruit
inferred← citeshttps://doi.org/10.1007/s11033-023-08551-wopenalex-snapshot
Omics technologies towards sesame improvement: a review
inferred← citeshttps://doi.org/10.1007/s11816-025-01014-7openalex-snapshot
A review on yield improvement of the important oilseed sesame (Sesamum indicum L.) using biotechnology
inferred← citeshttps://doi.org/10.1016/j.cpb.2026.100641openalex-snapshot
Directed SiGaResNet: A supervised graph neural network framework for inferring stability-aware ABA-responsive gene regulatory networks via transcriptomic meta-analysis
inferred← citeshttps://doi.org/10.1016/j.plantsci.2025.112849openalex-snapshot
Zanthoxylum armatum HD-ZIP II transcription factor ZaHB15 induces flowering and negatively regulates plant growth and drought tolerance
inferred← citeshttps://doi.org/10.1016/j.plaphy.2025.109505openalex-snapshot
ZmSIDP1, a DUF1644 gene from the halophyte Zoysia matrella, positively regulates salt tolerance in rice
inferred← citeshttps://doi.org/10.1016/j.sajb.2026.06.018openalex-snapshot
Genome-wide identification and expression analysis of the homeodomain-leucine zipper gene family in quinoa during the grain filling stage
inferred← citeshttps://doi.org/10.1186/s12864-025-12060-4openalex-snapshot
Genome-wide identification and transcription profiling of safflower (Carthamus tinctorius L.) HD-ZIP gene family under water deficit
inferred← citeshttps://doi.org/10.3389/fpls.2022.1027071openalex-snapshot
The roles of HD-ZIP proteins in plant abiotic stress tolerance
inferred← citeshttps://doi.org/10.3389/fpls.2023.1324643openalex-snapshot
Molecular and biochemical responses of sesame (Sesame indicum L.) to rhizobacteria inoculation under water deficit
inferred← citeshttps://doi.org/10.3390/ijms25063253openalex-snapshot
MsHDZ23, a Novel Miscanthus HD-ZIP Transcription Factor, Participates in Tolerance to Multiple Abiotic Stresses
inferred← citeshttps://doi.org/10.47495/okufbed.1107586openalex-snapshot
Determination of Adaptability of Sesame (Sesamum Indicum L.) Genotypes ın Siirt Ecological Conditions
inferred← citeshttps://doi.org/10.7717/peerj.15510openalex-snapshot
Analysis of the HD-Zip I transcription factor family in Salvia miltiorrhiza and functional research of SmHD-Zip12 in tanshinone synthesis
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