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Actinobacterial Strains as Genomic Candidates for Characterization of Genes Encoding Enzymes in Bioconversion of Lignocellulose

https://doi.org/10.1007/s12649-021-01595-8
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The Metagenomics RAST Server: A Public Resource for the Automatic Phylogenetic and Functional Analysis of Metagenomes
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Chitinolytic functions in actinobacteria: ecology, enzymes, and evolution
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Allelochemicals released by leaf residues of Micromeria fruticosa in soils, their uptake and metabolism by inhibited wheat seed
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Characterizing bacterial communities in tilapia pond surface sediment and their responses to pond differences and temporal variations
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Efficient screening of potential cellulases and hemicellulases produced by Bosea sp. FBZP-16 using the combination of enzyme assays and genome analysis
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The concept of operational taxonomic units revisited: genomes of bacteria that are regarded as closely related are often highly dissimilar
inferredcites →https://doi.org/10.1007/s12649-017-0059-yopenalex-snapshot
Biological Pretreatment of Lignocellulosic Biomass for Biofuels and Bioproducts: An Overview
inferredcites →https://doi.org/10.1007/s12649-017-9849-5openalex-snapshot
Cellulase- and Xylanase-Producing Bacterial Isolates with the Ability to Saccharify Wheat Straw and Their Potential Use in the Production of Pharmaceuticals and Chemicals from Lignocellulosic Materials
inferredcites →https://doi.org/10.1007/s12649-020-01305-wopenalex-snapshot
Different Facets of Lignocellulosic Biomass Including Pectin and Its Perspectives
inferredcites →https://doi.org/10.1016/0385-6380(87)90108-7openalex-snapshot
Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes
inferredcites →https://doi.org/10.1016/b978-0-444-63994-3.00013-8openalex-snapshot
Actinobacteria
inferredcites →https://doi.org/10.1016/j.biotechadv.2019.03.013openalex-snapshot
Lignocellulolytic systems of soil bacteria: A vast and diverse toolbox for biotechnological conversion processes
inferredcites →https://doi.org/10.1038/202928a0openalex-snapshot
Selection of Media for Isolation of Streptomycetes
inferredcites →https://doi.org/10.1038/s41598-020-64817-4openalex-snapshot
Enzymatic and genetic characterization of lignin depolymerization by Streptomyces sp. S6 isolated from a tropical environment
inferredcites →https://doi.org/10.1038/s41598-020-69241-2openalex-snapshot
A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota
inferredcites →https://doi.org/10.1038/s41598-020-70744-1openalex-snapshot
Characterization of deep-sea benthic invertebrate megafauna of the Galapagos Islands
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
inferredcites →https://doi.org/10.1093/bioinformatics/btz188openalex-snapshot
GToTree: a user-friendly workflow for phylogenomics
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkr201openalex-snapshot
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
inferredcites →https://doi.org/10.1093/nar/gks479openalex-snapshot
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
inferredcites →https://doi.org/10.1093/nar/gkt1178openalex-snapshot
The carbohydrate-active enzymes database (CAZy) in 2013
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1128/aem.03305-12openalex-snapshot
Phylogenetic Distribution of Potential Cellulases in Bacteria
inferredcites →https://doi.org/10.1128/aem.03718-14openalex-snapshot
Genomic Potential for Polysaccharide Deconstruction in Bacteria
inferredcites →https://doi.org/10.1128/mmbr.00005-07openalex-snapshot
Genomics of Actinobacteria : Tracing the Evolutionary History of an Ancient Phylum
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/1471-2105-9-386openalex-snapshot
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
inferredcites →https://doi.org/10.1186/1471-2105-9-s9-s19openalex-snapshot
A structural approach for finding functional modules from large biological networks
inferredcites →https://doi.org/10.1186/1471-2164-15-785openalex-snapshot
Bioinformatic characterisation of genes encoding cell wall degrading enzymes in the Phytophthora parasitica genome
inferredcites →https://doi.org/10.1186/s12864-020-6468-5openalex-snapshot
Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium
inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot
Accelerated Profile HMM Searches
inferredcites →https://doi.org/10.1371/journal.pgen.1004773openalex-snapshot
Functional Diversity of Carbohydrate-Active Enzymes Enabling a Bacterium to Ferment Plant Biomass
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0039331openalex-snapshot
Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria
inferredcites →https://doi.org/10.1371/journal.pone.0089108openalex-snapshot
Potential of Cometabolic Transformation of Polysaccharides and Lignin in Lignocellulose by Soil Actinobacteria
inferredcites →https://doi.org/10.17221/134/2009-pseopenalex-snapshot
Microbial enzyme-catalyzed processes in soils and their analysis
inferredcites →https://doi.org/10.3389/fmicb.2019.00077openalex-snapshot
Whole Cell Actinobacteria as Biocatalysts
inferredcites →https://doi.org/10.3389/fmicb.2019.00618openalex-snapshot
Metagenomic Insights Into a Cellulose-Rich Niche Reveal Microbial Cooperation in Cellulose Degradation
inferredcites →https://doi.org/10.5281/zenodo.1146014openalex-snapshot
GNU Parallel 20210322 ('2002-01-06')
inferredcites →https://doi.org/10.7150/ijbs.13537openalex-snapshot
Recent Developments in Using Advanced Sequencing Technologies for the Genomic Studies of Lignin and Cellulose Degrading Microorganisms

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Isolation of Lignocellulosic Functional Strains and Genomic Analysis of the Combined Microflora Lxb in Lignocellulose Degradation Process
inferred← citeshttps://doi.org/10.2139/ssrn.4645486openalex-extracted
Functional Enzyme Analysis and Metabolic Regulation Mechanism of The Combined Microflora Lxb in the Degradation of Lignocellulose
inferred← citeshttps://doi.org/10.2139/ssrn.4664165openalex-extracted
Functional Enzyme Analysis and Metabolic Regulation Mechanism of the Combined Microflora Lxb in the Degradation of Lignocellulose
inferred← citeshttps://doi.org/10.1016/j.agee.2025.110141openalex-snapshot
Long-term nutrient imbalance raises soil antibiotic accumulation and bacterial antibiotic resistance in a Chinese wheat–maize cropping system
inferred← citeshttps://doi.org/10.1016/j.bej.2024.109285openalex-snapshot
Functional enzyme analysis and metabolic regulation mechanism of the combined microflora LXB in the degradation of lignocellulose
inferred← citeshttps://doi.org/10.1016/j.biocontrol.2022.104867openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.139675openalex-snapshot
Genomic analysis and synergistic effect with cellulase by Streptomyces thermocarboxydus 12219
inferred← citeshttps://doi.org/10.1016/j.indcrop.2026.123020openalex-snapshot
Study on the domestication of bamboo lignin-degrading microbial consortium to enhance lignin degradation capacity
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Harvest residue recycling rather than slash-burning results in the enhancement of soil fertility and bacterial community stability in Eucalyptus plantations
inferred← citeshttps://doi.org/10.1016/j.scp.2022.100900openalex-snapshot
Partial characterization of β-glucosidase, β-xylosidase, and α-l-arabinofuranosidase from Jiangella alba DSM 45237 and their potential in lignocellulose-based biorefining
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A green process for lignin extraction and lignocellulose degrading enzyme production from rice straw by solid state fermentation with Streptomyces thermoviolaceous strains
inferred← citeshttps://doi.org/10.1080/10242422.2026.2743971openalex-snapshot
Multi-dimensional roles of CAZymes in functional and fermented foods
inferred← citeshttps://doi.org/10.1128/msystems.01388-25openalex-snapshot
Isolation and characterization of marine microorganisms capable of degrading plastics
inferred← citeshttps://doi.org/10.1186/s40168-025-02200-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fmicb.2024.1423728openalex-snapshot
Microbial enzymatic indices for predicting composting quality of recalcitrant lignocellulosic substrates
inferred← citeshttps://doi.org/10.3390/microorganisms12081535openalex-snapshot
Initial Litter Chemistry and UV Radiation Drive Chemical Divergence in Litter during Decomposition
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