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MiSebastes: An eDNA metabarcoding primer set for rockfishes (genus Sebastes)

https://doi.org/10.1007/s12686-021-01219-2

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?

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Comparing volunteer and professionally collected monitoring data from the rocky subtidal reefs of Southern California, USA

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Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

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Rockfish in Puget Sound: An ecological history of exploitation

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Environmental DNA for wildlife biology and biodiversity monitoring

inferredcites →https://doi.org/10.1016/j.ympev.2006.12.026openalex-snapshot

The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier)

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Basic Local Alignment Search Tool

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Demonstration of the potential of environmental DNA as a tool for the detection of avian species

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Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction

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The Geography of Morphological Convergence in the Radiations of PacificSebastesRockfishes

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ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis

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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

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Metabarcoding of marine zooplankton: prospects, progress and pitfalls

inferredcites →https://doi.org/10.1098/rsbl.2008.0118openalex-snapshot

Species detection using environmental DNA from water samples

inferredcites →https://doi.org/10.1098/rsos.150088openalex-snapshot

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

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The California environmental DNA “CALeDNA” program

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obitools : a unix ‐inspired software package for DNA metabarcoding

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Rapid degradation of longer DNA fragments enables the improved estimation of distribution and biomass using environmental DNA

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Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem

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A rapid environmental DNA method for detecting white sharks in the open ocean

inferredcites →https://doi.org/10.1111/2041-210x.13214openalex-snapshot

Anacapa Toolkit : An environmental DNA toolkit for processing multilocus metabarcode datasets

inferredcites →https://doi.org/10.1111/ele.12162openalex-snapshot

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

inferredcites →https://doi.org/10.1111/j.1365-2419.2007.00429.xopenalex-snapshot

Diets of top predators indicate pelagic juvenile rockfish ( Sebastes spp.) abundance in the California Current System

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05542.xopenalex-snapshot

Environmental DNA

inferredcites →https://doi.org/10.1111/mec.13428openalex-snapshot

Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

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Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

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Harnessing DNA to improve environmental management

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Climate Change Impacts on Marine Ecosystems

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An In silico approach for the evaluation of DNA barcodes

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A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy

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inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

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inferredcites →https://doi.org/10.3354/meps11633openalex-snapshot

Rockfish assemblage structure and spawning locations in southern California identified through larval sampling

inferredcites →https://doi.org/10.3389/fmars.2019.00477openalex-snapshot

Modeling Environmental DNA Transport in the Coastal Ocean Using Lagrangian Particle Tracking

inferredcites →https://doi.org/10.3389/fmars.2019.00732openalex-snapshot

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inferredcites →https://doi.org/10.3389/fmars.2019.00795openalex-snapshot

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Spatial distribution of environmental DNA in a nearshore marine habitat

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/mbmg.10.174450zenodo-depositor-declared

Guidance and best practices for species identification using eDNA metabarcoding – When do you call a cod a cod?

inferred← citeshttps://doi.org/10.1002/ecog.08014openalex-snapshot

Community structure and range shifts in Arctic marine fish under climate change

inferred← citeshttps://doi.org/10.1002/edn3.297openalex-snapshot

Leveraging eDNA metabarcoding to characterize nearshore fish communities in Southeast Alaska: Do habitat and tide matter?

inferred← citeshttps://doi.org/10.1002/edn3.423openalex-snapshot

Paired environmental DNA and dive surveys provide distinct but complementary snapshots of marine biodiversity in a temperate fjord

inferred← citeshttps://doi.org/10.1002/edn3.489openalex-snapshot

rCRUX : A rapid and versatile tool for generating metabarcoding reference libraries in R

inferred← citeshttps://doi.org/10.1002/edn3.586openalex-snapshot

Detection differences between eDNA and mid‐water trawls are driven by fish biomass and habitat preferences

inferred← citeshttps://doi.org/10.1002/edn3.70028openalex-snapshot

Mapping Biodiversity Coast‐to‐Coast‐to‐Coast Across Canada's Three Oceans Using eDNA Metabarcoding

inferred← citeshttps://doi.org/10.1002/edn3.70074openalex-snapshot

Validated Environmental DNA Assay for Detection of the Rare Rice's Whale (Balaenoptera ricei)

inferred← citeshttps://doi.org/10.1002/edn3.70176openalex-snapshot

Development and Validation of an eDNA Primer Set for Rockfishes in the Alaska Current Provides a New Tool for Fisheries Management

inferred← citeshttps://doi.org/10.1002/edn3.70255openalex-snapshot

BirT : A Novel Primer Pair for Avian Environmental DNA Metabarcoding

inferred← citeshttps://doi.org/10.1007/s12601-022-00082-yopenalex-snapshot

Comparing Environmental DNA Metabarcoding and Underwater Visual Census to Monitor Korean Coastal Fish Community

inferred← citeshttps://doi.org/10.1016/j.ecolind.2024.111830openalex-snapshot

Comparison of environmental DNA and SCUBA diving methods to survey keystone rockfish species on the Central Coast of British Columbia, Canada

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.162322openalex-snapshot

Aquatic environmental DNA: A review of the macro-organismal biomonitoring revolution

inferred← citeshttps://doi.org/10.1016/j.watbs.2022.100007openalex-snapshot

Methodology for fish biodiversity monitoring with environmental DNA metabarcoding: The primers, databases and bioinformatic pipelines

inferred← citeshttps://doi.org/10.1016/j.wsee.2024.08.003openalex-snapshot

Comparing the performance variability of different eDNA primers in fish monitoring

inferred← citeshttps://doi.org/10.1038/s41598-021-93859-5openalex-snapshot

Environmental DNA reveals the fine-grained and hierarchical spatial structure of kelp forest fish communities

inferred← citeshttps://doi.org/10.1101/2023.05.12.540550openalex-snapshot

Environmental DNA metabarcoding reveals distinct fish assemblages supported by seagrass ( Zostera marina and Zostera pacifica ) beds in different geographic settings in Southern California

inferred← citeshttps://doi.org/10.1111/1755-0998.13450openalex-snapshot

Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem

inferred← citeshttps://doi.org/10.1111/1755-0998.13849openalex-snapshot

Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding

inferred← citeshttps://doi.org/10.1111/1755-0998.14119openalex-snapshot

Observation Bias in Metabarcoding

inferred← citeshttps://doi.org/10.1111/2041-210x.70370openalex-snapshot

Maximizing eDNA detections of rare marine organisms: A case study of a delphinid species

inferred← citeshttps://doi.org/10.1111/jfb.70396openalex-snapshot

A haplotype‐specific PCR strategy for rapid and cost‐effective identification of redfish species (genus Sebastes ) in the North Atlantic and Arctic oceans

inferred← citeshttps://doi.org/10.1146/annurev-marine-041421-082251openalex-snapshot

Environmental DNA Metabarcoding: A Novel Method for Biodiversity Monitoring of Marine Fish Communities

inferred← citeshttps://doi.org/10.1371/journal.pone.0260903openalex-snapshot

A comparison of biomonitoring methodologies for surf zone fish communities

inferred← citeshttps://doi.org/10.1371/journal.pone.0286228openalex-snapshot

Environmental DNA metabarcoding reveals distinct fish assemblages supported by seagrass (Zostera marina and Zostera pacifica) beds in different geographic settings in Southern California

inferred← citeshttps://doi.org/10.1371/journal.pone.0337724openalex-snapshot

eDNA reveals spatial differences in species composition of protected rockfishes

inferred← citeshttps://doi.org/10.7717/peerj.14071openalex-snapshot

A manager’s guide to using eDNA metabarcoding in marine ecosystems

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