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Integrated regulatory network in Pseudomonas syringae reveals dynamics of virulence

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-61737-998-7_10openalex-snapshot
Construction of Pseudomonas syringae pv. tomato DC3000 Mutant and Polymutant Strains
inferredcites →https://doi.org/10.1007/s00438-012-0693-9openalex-snapshot
Characterization of each aefR and mexT mutant in Pseudomonas syringae pv. tabaci 6605
inferredcites →https://doi.org/10.1007/s10059-011-1017-3openalex-snapshot
Negative Regulation of Pathogenesis in Pseudomonas syringae pv. tabaci 11528 by ATP-Dependent Lon Protease
inferredcites →https://doi.org/10.1016/0378-1119(90)90203-4openalex-snapshot
A new family of RSF1010-derived expression and lac-fusion broad-host-range vectors for Gram-negative bacteria
inferredcites →https://doi.org/10.1016/j.mib.2008.12.003openalex-snapshot
Pseudomonas syringae type III secretion system effectors: repertoires in search of functions
inferredcites →https://doi.org/10.1016/j.resmic.2004.10.017openalex-snapshot
The VirPphA/AvrPtoB family of type III effectors in Pseudomonas syringae
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RpoN (σ54) is required for plasmid-encoded coronatine biosynthesis in Pseudomonas syringae
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A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants
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Type III secretion systems: machines to deliver bacterial proteins into eukaryotic cells?
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Protein signaling via type III secretion pathways in phytopathogenic bacteria
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An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus
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A compendium of DNA-binding specificities of transcription factors in Pseudomonas syringae
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Arabidopsis CYP86A2 represses Pseudomonas syringae type III genes and is required for cuticle development
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Pathogenicity and other genomic islands in plant pathogenic bacteria
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Identification of novel hrp ‐regulated genes through functional genomic analysis of the Pseudomonas syringae pv. tomato DC3000 genome
inferredcites →https://doi.org/10.1046/j.1365-2958.2002.03008.xopenalex-snapshot
Lon protease functions as a negative regulator of type III protein secretion in Pseudomonas syringae
inferredcites →https://doi.org/10.1073/pnas.0803391105openalex-snapshot
The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism
inferredcites →https://doi.org/10.1073/pnas.0910308106openalex-snapshot
Small RNA as global regulator of carbon catabolite repression in Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1073/pnas.97.9.4856openalex-snapshot
The Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plants
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
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STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/nar/gku865openalex-snapshot
Molecular mechanisms of two-component system RhpRS regulating type III secretion system in Pseudomonas syringae
inferredcites →https://doi.org/10.1093/nar/gkv1227openalex-snapshot
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database
inferredcites →https://doi.org/10.1093/oxfordjournals.jbchem.a122817openalex-snapshot
Phosphorylation of a Bacterial Activator Protein, OmpR, by a Protein Kinase, EnvZ, Results in Stimulation of Its DNA-Binding Ability1
inferredcites →https://doi.org/10.1094/mpmi-02-18-0035-ropenalex-snapshot
HrpS Is a Global Regulator on Type III Secretion System (T3SS) and Non-T3SS Genes in Pseudomonas savastanoi pv. phaseolicola
inferredcites →https://doi.org/10.1094/mpmi-06-16-0114-ropenalex-snapshot
Lon Protease Is Involved in RhpRS-Mediated Regulation of Type III Secretion in Pseudomonas syringae
inferredcites →https://doi.org/10.1094/mpmi-18-0634openalex-snapshot
Analysis of Promoters Recognized by HrpL, an Alternative σ-Factor Protein from Pantoea agglomerans pv. gypsophilae
inferredcites →https://doi.org/10.1094/mpmi-19-0768openalex-snapshot
CorR Regulates Multiple Components of Virulence in Pseudomonas syringae pv. tomato DC3000
inferredcites →https://doi.org/10.1094/mpmi-19-0976openalex-snapshot
Genome-Wide Gene Expression Analysis of Pseudomonas syringae pv. tomato DC3000 Reveals Overlapping and Distinct Pathways Regulated by hrpL and hrpRS
inferredcites →https://doi.org/10.1094/mpmi-19-1151openalex-snapshot
Closing the Circle on the Discovery of Genes Encoding Hrp Regulon Members and Type III Secretion System Effectors in the Genomes of Three Model Pseudomonas syringae Strains
inferredcites →https://doi.org/10.1094/mpmi-20-3-0223openalex-snapshot
Two-Component Sensor RhpS Promotes Induction of Pseudomonas syringae Type III Secretion System by Repressing Negative Regulator RhpR
inferredcites →https://doi.org/10.1094/mpmi-20-6-0682openalex-snapshot
Mutation of Lon Protease Differentially Affects the Expression of Pseudomonas syringae Type III Secretion System Genes in Rich and Minimal Media and Reduces Pathogenicity
inferredcites →https://doi.org/10.1094/mpmi-22-8-0964openalex-snapshot
Pseudomonas syringae pv. phaseolicola Mutants Compromised for Type III Secretion System Gene Induction
inferredcites →https://doi.org/10.1094/mpmi-22-9-1069openalex-snapshot
The Majority of the Type III Effector Inventory of Pseudomonas syringae pv. tomato DC3000 Can Suppress Plant Immunity
inferredcites →https://doi.org/10.1094/mpmi-23-5-0665openalex-snapshot
Positive Regulation of the Hrp Type III Secretion System in Pseudomonas syringae pv. phaseolicola
inferredcites →https://doi.org/10.1094/mpmi-23-5-0682openalex-snapshot
Negative Regulation of the Hrp Type III Secretion System in Pseudomonas syringae pv. phaseolicola
inferredcites →https://doi.org/10.1094/mpmi-23-7-0927openalex-snapshot
Pseudomonas syringae Two-Component Response Regulator RhpR Regulates Promoters Carrying an Inverted Repeat Element
inferredcites →https://doi.org/10.1094/mpmi.2003.16.12.1106openalex-snapshot
GacA, the Response Regulator of a Two-Component System, Acts as a Master Regulator in Pseudomonas syringae pv. tomato DC3000 by Controlling Regulatory RNA, Transcriptional Activators, and Alternate Sigma Factors
inferredcites →https://doi.org/10.1094/mpmi.2004.17.5.521openalex-snapshot
Regulation of AHL Production and Its Contribution to Epiphytic Fitness in Pseudomonas syringae
inferredcites →https://doi.org/10.1111/1462-2920.14779openalex-snapshot
Regulation of type III secretion system in Pseudomonas syringae
inferredcites →https://doi.org/10.1111/1462-2920.15067openalex-snapshot
Pseudomonas syringae dual‐function protein Lon switches between virulence and metabolism by acting as both DNA ‐binding transcriptional regulator and protease in different environments
inferredcites →https://doi.org/10.1111/j.1364-3703.2009.00576.xopenalex-snapshot
From bacterial avirulence genes to effector functions via the hrp delivery system: an overview of 25 years of progress in our understanding of plant innate immunity
inferredcites →https://doi.org/10.1111/j.1365-2958.2004.04438.xopenalex-snapshot
Type III secretion chaperones of Pseudomonas syringae protect effectors from Lon‐associated degradation
inferredcites →https://doi.org/10.1111/j.1365-2958.2005.04704.xopenalex-snapshot
A chaperone‐like HrpG protein acts as a suppressor of HrpV in regulation of the Pseudomonas syringae pv. syringae type III secretion system
inferredcites →https://doi.org/10.1111/mmi.12270openalex-snapshot
Transcriptional activation of the CrcZ and CrcY regulatory RNAs by the CbrB response regulator in P seudomonas putida
inferredcites →https://doi.org/10.1111/mpp.12003openalex-snapshot
Virulence factor regulator ( V fr) controls virulence‐associated phenotypes in P seudomonas syringae pv. tabaci 6605 by a quorum sensing‐independent mechanism
inferredcites →https://doi.org/10.1111/mpp.12349openalex-snapshot
The pathogenicity factor HrpF interacts with HrpA and HrpG to modulate type III secretion system (T3SS) function and t3ss expression in Pseudomonas syringae pv. averrhoi
inferredcites →https://doi.org/10.1111/mpp.12876openalex-snapshot
A revised model for the role of GacS/GacA in regulating type III secretion by Pseudomonas syringae pv. tomato DC3000
inferredcites →https://doi.org/10.1126/science.1062013openalex-snapshot
Common and Contrasting Themes of Plant and Animal Diseases
inferredcites →https://doi.org/10.1126/science.2781284openalex-snapshot
Bacterial Blight of Soybean: Regulation of a Pathogen Gene Determining Host Cultivar Specificity
inferredcites →https://doi.org/10.1126/science.284.5418.1322openalex-snapshot
Type III Secretion Machines: Bacterial Devices for Protein Delivery into Host Cells
inferredcites →https://doi.org/10.1128/aem.02445-06openalex-snapshot
PsrA, the Pseudomonas Sigma Regulator, Controls Regulators of Epiphytic Fitness, Quorum-Sensing Signals, and Plant Interactions in Pseudomonas syringae pv. tomato Strain DC3000
inferredcites →https://doi.org/10.1128/aem.66.2.850-854.2000openalex-snapshot
Pathovars of Pseudomonas syringae Causing Bacterial Brown Spot and Halo Blight in Phaseolus vulgaris L. Are Distinguishable by Ribotyping
inferredcites →https://doi.org/10.1128/jb.00276-16openalex-snapshot
AlgU Controls Expression of Virulence Genes in Pseudomonas syringae pv. tomato DC3000
inferredcites →https://doi.org/10.1128/jb.00418-19openalex-snapshot
Pseudomonas syringae AlgU Downregulates Flagellin Gene Expression, Helping Evade Plant Immunity
inferredcites →https://doi.org/10.1128/jb.00538-17openalex-snapshot
Ca 2+ -Induced Two-Component System CvsSR Regulates the Type III Secretion System and the Extracytoplasmic Function Sigma Factor AlgU in Pseudomonas syringae pv. tomato DC3000
inferredcites →https://doi.org/10.1128/jb.00576-17openalex-snapshot
An AlgU-Regulated Antisense Transcript Encoded within the Pseudomonas syringae fleQ Gene Has a Positive Effect on Motility
inferredcites →https://doi.org/10.1128/jb.00705-16openalex-snapshot
An ompR-envZ Two-Component System Ortholog Regulates Phase Variation, Osmotic Tolerance, Motility, and Virulence in Acinetobacter baumannii Strain AB5075
inferredcites →https://doi.org/10.1128/jb.00911-10openalex-snapshot
The Sensor Kinase CbrA Is a Global Regulator That Modulates Metabolism, Virulence, and Antibiotic Resistance in Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1128/jb.174.11.3499-3507.1992openalex-snapshot
Plant and environmental sensory signals control the expression of hrp genes in Pseudomonas syringae pv. phaseolicola
inferredcites →https://doi.org/10.1128/jb.174.6.1734-1741.1992openalex-snapshot
Organization and environmental regulation of the Pseudomonas syringae pv. syringae 61 hrp cluster
inferredcites →https://doi.org/10.1128/jb.176.10.3089-3091.1994openalex-snapshot
A single promoter sequence recognized by a newly identified alternate sigma factor directs expression of pathogenicity and host range determinants in Pseudomonas syringae
inferredcites →https://doi.org/10.1128/jb.176.4.1025-1036.1994openalex-snapshot
Identification of a putative alternate sigma factor and characterization of a multicomponent regulatory cascade controlling the expression of Pseudomonas syringae pv. syringae Pss61 hrp and hrmA genes
inferredcites →https://doi.org/10.1128/jb.179.14.4464-4472.1997openalex-snapshot
Characterization of the alginate biosynthetic gene cluster in Pseudomonas syringae pv. syringae
inferredcites →https://doi.org/10.1128/jb.180.17.4532-4537.1998openalex-snapshot
Negative Regulation of hrp Genes in Pseudomonas syringae by HrpV
inferredcites →https://doi.org/10.1128/jb.182.12.3508-3516.2000openalex-snapshot
The Alternative Sigma Factor RpoN Is Required for hrp Activity in Pseudomonas syringae pv. Maculicola and Acts at the Level of hrpL Transcription
inferredcites →https://doi.org/10.1128/jb.183.19.5589-5598.2001openalex-snapshot
Enhancer-Binding Proteins HrpR and HrpS Interact To Regulatehrp-Encoded Type III Protein Secretion inPseudomonas syringaeStrains
inferredcites →https://doi.org/10.1128/mbio.01096-18openalex-snapshot
Migration of Type III Secretion System Transcriptional Regulators Links Gene Expression to Secretion
inferredcites →https://doi.org/10.1128/mbio.01683-14openalex-snapshot
Transcriptional Analysis of the Global Regulatory Networks Active in Pseudomonas syringae during Leaf Colonization
inferredcites →https://doi.org/10.1128/mbio.02838-18openalex-snapshot
Pseudomonas savastanoi Two-Component System RhpRS Switches between Virulence and Metabolism by Tuning Phosphorylation State and Sensing Nutritional Conditions
inferredcites →https://doi.org/10.1128/mmbr.62.2.379-433.1998openalex-snapshot
Type III Protein Secretion Systems in Bacterial Pathogens of Animals and Plants
inferredcites →https://doi.org/10.1128/mmbr.64.3.624-653.2000openalex-snapshot
Bacteria in the Leaf Ecosystem with Emphasis on Pseudomonas syringae —a Pathogen, Ice Nucleus, and Epiphyte
inferredcites →https://doi.org/10.1146/annurev.cb.04.110188.000321openalex-snapshot
Environmentally Regulated Gene Expression for Membrane Proteins in Escherichia coli
inferredcites →https://doi.org/10.1146/annurev.phyto.34.1.153openalex-snapshot
BACTERIAL AVIRULENCE GENES
inferredcites →https://doi.org/10.1146/annurev.phyto.42.040103.110731openalex-snapshot
TYPE III SECRETION SYSTEM EFFECTOR PROTEINS: Double Agents in Bacterial Disease and Plant Defense
inferredcites →https://doi.org/10.1186/1471-2105-11-237openalex-snapshot
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2012-13-4-r29openalex-snapshot
RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1371/journal.pbio.1002116openalex-snapshot
A FRET-Based DNA Biosensor Tracks OmpR-Dependent Acidification of Salmonella during Macrophage Infection
inferredcites →https://doi.org/10.1371/journal.pbio.1002449openalex-snapshot
Structural and Molecular Mechanism of CdpR Involved in Quorum-Sensing and Bacterial Virulence in Pseudomonas aeruginosa
inferredcites →https://doi.org/10.1371/journal.pone.0106115openalex-snapshot
Global Analysis of the HrpL Regulon in the Plant Pathogen Pseudomonas syringae pv. tomato DC3000 Reveals New Regulon Members with Diverse Functions
inferredcites →https://doi.org/10.1371/journal.pone.0223637openalex-snapshot
Re-evaluation of a Tn5::gacA mutant of Pseudomonas syringae pv. tomato DC3000 uncovers roles for uvrC and anmK in promoting virulence
inferredcites →https://doi.org/10.1371/journal.ppat.1002621openalex-snapshot
Virulence Regulator EspR of Mycobacterium tuberculosis Is a Nucleoid-Associated Protein
inferredcites →https://doi.org/10.1371/journal.ppat.1005874openalex-snapshot
Screen of Non-annotated Small Secreted Proteins of Pseudomonas syringae Reveals a Virulence Factor That Inhibits Tomato Immune Proteases
inferredcites →https://doi.org/10.1371/journal.ppat.1007673openalex-snapshot
Two components of the rhpPC operon coordinately regulate the type III secretion system and bacterial fitness in Pseudomonas savastanoi pv. phaseolicola
inferredcites →https://doi.org/10.1371/journal.ppat.1008680openalex-snapshot
Ancient co-option of an amino acid ABC transporter locus in Pseudomonas syringae for host signal-dependent virulence gene regulation
inferredcites →https://doi.org/10.3389/fmicb.2018.02656openalex-snapshot
A New Role of OmpR in Acid and Osmotic Stress in Salmonella and E. coli
inferredcites →https://doi.org/10.3389/fmicb.2019.00746openalex-snapshot
AmrZ and FleQ Co-regulate Cellulose Production in Pseudomonas syringae pv. Tomato DC3000
inferredcites →https://doi.org/10.4161/rna.23019openalex-snapshot
CrcZ and CrcX regulate carbon source utilization inPseudomonas syringaepathovartomatostrain DC3000

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Pseudomonas syringae subpopulations cooperate by coordinating flagellar and type III secretion spatiotemporal dynamics to facilitate plant infection
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VimR is a conserved master transcription regulator controlling virulence and metabolism in Pseudomonas
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RpoN is required for a functional type III secretion system in Yersinia pseudotuberculosis
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Genetic dissection of the tissue‐specific roles of type III effectors and phytotoxins in the pathogenicity of Pseudomonas syringae pv. syringae to cherry
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Type III Secretion System Repressor RhpR Induces GrlP, a Glycine-Rich Outer Membrane Lipoprotein with Functions in Regulating the Periplasmic Space and Pleiotropic Responses
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Environmental alkalization suppresses deployment of virulence strategies in Pseudomonas syringae pv. tomato DC3000
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Identification of Indole-3-Acetic Acid-Regulated Genes in Pseudomonas syringae pv. tomato Strain DC3000
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Bacterial Transcription Factors Bind to Coding Regions and Regulate Internal Cryptic Promoters
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Heat Stress and Microbial Stress Induced Defensive Phenol Accumulation in Medicinal Plant Sparganium stoloniferum
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Additional file 1 of Maintenance of tRNA and elongation factors supports T3SS proteins translational elongations in pathogenic bacteria during nutrient starvation
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709650openalex-snapshot
Additional file 1 of Role of the sigma factor AlgU in regulating growth, virulence, motility, exopolysaccharide production, and environmental stress adaptation of Pseudomonas syringae pv. actinidiae QSY6
inferred← citeshttps://doi.org/10.6084/m9.figshare.26709653openalex-snapshot
Additional file 2 of Role of the sigma factor AlgU in regulating growth, virulence, motility, exopolysaccharide production, and environmental stress adaptation of Pseudomonas syringae pv. actinidiae QSY6
inferred← citeshttps://doi.org/10.70675/51eff8d2zd74bz4e16z8793z89d788b60851openalex-snapshot
Induction ou restriction de la virulence bactérienne : du rôle du temps et de l'environnement quant à l'issue de l'interaction plante-pathogène
inferred← citeshttps://doi.org/10.7554/elife.96172openalex-snapshot
Architecture of genome-wide transcriptional regulatory network reveals dynamic functions and evolutionary trajectories in Pseudomonas syringae
inferred← citeshttps://doi.org/10.7554/elife.96172.1openalex-snapshot
Architecture of genome-wide transcriptional regulatory network reveals dynamic functions and evolutionary trajectories in Pseudomonas syringae
inferred← citeshttps://doi.org/10.7554/elife.96172.2openalex-snapshot
Architecture of genome-wide transcriptional regulatory network reveals dynamic functions and evolutionary trajectories in Pseudomonas syringae
inferred← citeshttps://doi.org/10.7554/elife.96172.3openalex-snapshot
Architecture of genome-wide transcriptional regulatory network reveals dynamic functions and evolutionary trajectories in Pseudomonas syringae
inferred← citeshttps://doi.org/10.7554/elife.96290openalex-snapshot
DNA methylome regulates virulence and metabolism in Pseudomonas syringae
inferred← citeshttps://doi.org/10.7554/elife.96290.1openalex-snapshot
DNA Methylome Regulates Virulence and Metabolism in Pseudomonas syringae
inferred← citeshttps://doi.org/10.7554/elife.96290.2openalex-snapshot
DNA Methylome Regulates Virulence and Metabolism in Pseudomonas syringae
inferred← citeshttps://doi.org/10.7554/elife.96290.3openalex-snapshot
DNA methylome regulates virulence and metabolism in Pseudomonas syringae
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