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Evaluation of Fourier transform infrared (FT-IR) spectroscopy and chemometrics as a rapid approach for sub-typing Escherichia coli O157:H7 isolates

https://doi.org/10.1016/j.fm.2012.02.010

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Encyclopedia of Analytical Chemistry

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Infrared Spectroscopy in Microbiology

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Infrared spectroscopy of biomolecules

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FTIR-based polyphasic identification of lactic acid bacteria isolated from traditional Greek Graviera cheese

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Using of infrared spectroscopy to study the survival and injury of Escherichia coli O157:H7, Campylobacter jejuni and Pseudomonas aeruginosa under cold stress in low nutrient media

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Subtyping of Listeria monocytogenes at the haplotype level by Fourier transform infrared (FT-IR) spectroscopy and multivariate statistical analysis

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Fourier Transform Infrared microspectroscopy and chemometrics as a tool for the discrimination of cyanobacterial strains

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Smoothing and Differentiation of Data by Simplified Least Squares Procedures.

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Pathogenic Escherichia coli

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Octamer-based genome scanning distinguishes a unique subpopulation of Escherichia coli O157:H7 strains in cattle

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Multistate Outbreak ofEscherichia coliO157:H7 Infection Associated with Consumption of Packaged Spinach, August–September 2006: The Wisconsin Investigation

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Second Generation Subtyping: A Proposed PulseNet Protocol for Multiple-Locus Variable-Number Tandem Repeat Analysis of Shiga Toxin–Producing Escherichia coli O157 (STEC O157)

inferredcites →https://doi.org/10.1093/oxfordjournals.epirev.a036079openalex-snapshot

The Epidemiology of Infections Caused by Escherichia coli O157: H7, Other Enterohemorrhagic E. coli, and the Associated Hemolytic Uremic Syndrome

inferredcites →https://doi.org/10.1099/00221287-137-1-69openalex-snapshot

Classification and identification of bacteria by Fourier-transform infrared spectroscopy

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Relationship between O-antigen subtypes, bacterial surface structures and O-antigen gene clusters in Escherichia coli O123 strains carrying genes for Shiga toxins and intimin

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Molecular typing of Japanese Escherichia coli O157 : H7 isolates from clinical specimens by multilocus variable-number tandem repeat analysis and PFGE

inferredcites →https://doi.org/10.1111/j.1365-2621.2006.tb08908.xopenalex-snapshot

Differentiation of Crude Lipopolysaccharides from Escherichia coli Strains Using Fourier Transform Infrared Spectroscopy and Chemometrics

inferredcites →https://doi.org/10.1111/j.1365-2672.2006.02969.xopenalex-snapshot

FT-IR microspectroscopy for early identification of some clinically relevant pathogens

inferredcites →https://doi.org/10.1111/j.1745-4581.2006.00045.xopenalex-snapshot

CLASSIFICATION OF FOODBORNE PATHOGENS BY FOURIER TRANSFORM INFRARED SPECTROSCOPY AND PATTERN RECOGNITION TECHNIQUES

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Detection of E. coli O157:H7 from Ground Beef Using Fourier Transform Infrared (FT‐IR) Spectroscopy and Chemometrics

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Evaluation of Major Types of Shiga Toxin 2e-Producing Escherichia coli Bacteria Present in Food, Pigs, and the Environment as Potential Pathogens for Humans

inferredcites →https://doi.org/10.1128/aem.00985-08openalex-snapshot

Rapid Determination ofEscherichia coliO157:H7 Lineage Types and Molecular Subtypes by Using Comparative Genomic Fingerprinting

inferredcites →https://doi.org/10.1128/aem.01035-06openalex-snapshot

Greater Diversity of Shiga Toxin-Encoding Bacteriophage Insertion Sites among Escherichia coli O157:H7 Isolates from Cattle than in Those from Humans

inferredcites →https://doi.org/10.1128/aem.01288-09openalex-snapshot

Lineage and Host Source Are Both Correlated with Levels of Shiga Toxin 2 Production by Escherichia coli O157:H7 Strains

inferredcites →https://doi.org/10.1128/aem.01666-09openalex-snapshot

Differential Expression of Virulence and Stress Fitness Genes between Escherichia coli O157:H7 Strains with Clinical or Bovine-Biased Genotypes

inferredcites →https://doi.org/10.1128/aem.02373-09openalex-snapshot

Effects of Environmental Stress on Stability of Tandem Repeats in Escherichia coli O157:H7

inferredcites →https://doi.org/10.1128/aem.61.1.377-378.1995openalex-snapshot

Discrimination of species in the genus Listeria by Fourier transform infrared spectroscopy and canonical variate analysis

inferredcites →https://doi.org/10.1128/aem.61.7.2806-2808.1995openalex-snapshot

Use of pulsed-field gel electrophoresis for epidemiological study of Escherichia coli O157:H7 during a food-borne outbreak

inferredcites →https://doi.org/10.1128/aem.67.4.1461-1469.2001openalex-snapshot

Investigating Microbial (Micro)colony Heterogeneity by Vibrational Spectroscopy

inferredcites →https://doi.org/10.1128/aem.70.11.6846-6854.2004openalex-snapshot

Identification of Common Subpopulations of Non-Sorbitol-Fermenting, β-Glucuronidase-Negative Escherichia coli O157:H7 from Bovine Production Environments and Human Clinical Samples

inferredcites →https://doi.org/10.1128/jb.185.12.3596-3605.2003openalex-snapshot

Escherichia coli O157:H7 Shiga Toxin-Encoding Bacteriophages: Integrations, Excisions, Truncations, and Evolutionary Implications

inferredcites →https://doi.org/10.1128/jb.187.5.1783-1791.2005openalex-snapshot

Evolution of Genomic Content in the Stepwise Emergence ofEscherichia coliO157:H7

inferredcites →https://doi.org/10.1128/jcm.00267-09openalex-snapshot

Improved Multiple-Locus Variable-Number Tandem-Repeat Assay for Staphylococcus aureus Genotyping, Providing a Highly Informative Technique Together with Strong Phylogenetic Value

inferredcites →https://doi.org/10.1128/jcm.39.9.3060-3065.2001openalex-snapshot

Stx2 Subtyping of Shiga Toxin-Producing Escherichia coli Isolated from Cattle in France: Detection of a New Stx2 Subtype and Correlation with Additional Virulence Factors

inferredcites →https://doi.org/10.1128/jcm.41.12.5389-5397.2003openalex-snapshot

Multilocus Variable-Number Tandem Repeat AnalysisDistinguishes Outbreak and Sporadic Escherichia coli O157:H7Isolates

inferredcites →https://doi.org/10.1128/jcm.44.2.374-377.2006openalex-snapshot

Locus-Specific Mutational Events in a Multilocus Variable-Number Tandem Repeat Analysis of Escherichia coli O157:H7

inferredcites →https://doi.org/10.1186/1471-2164-8-121openalex-snapshot

Genome evolution in major Escherichia coli O157:H7 lineages

inferredcites →https://doi.org/10.1371/journal.pone.0001159openalex-snapshot

Incidence and Tracking of Escherichia coli O157:H7 in a Major Produce Production Region in California

inferredcites →https://doi.org/10.17221/14/2008-cjfsopenalex-snapshot

FT-IR spectroscopic characteristics of differently cultivated Escherichia coli

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Foodborne Pathogens: Microbiology and Molecular Biology

inferredcites →https://doi.org/10.4014/jmb.0908.08007openalex-snapshot

A Brief Overview of Escherichia coli O157:H7 and Its Plasmid O157

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