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Mitogenomic perspectives into sciaenid fishes' phylogeny and evolution origin in the New World

https://doi.org/10.1016/j.gene.2014.01.048

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Organization of the Mitochondrial Genome of a Deep-Sea Fish, Gonostoma gracile (Teleostei: Stomiiformes): First Example of Transfer RNA Gene Rearrangements in Bony Fishes

inferredcites →https://doi.org/10.1016/j.margen.2010.10.003openalex-snapshot

Complete mitochondrial genome of the miiuy croaker Miichthys miiuy (Perciformes, Sciaenidae) with phylogenetic consideration

inferredcites →https://doi.org/10.1016/j.ympev.2009.06.018openalex-snapshot

A mitogenomic perspective on the phylogeny and biogeography of living caecilians (Amphibia: Gymnophiona)

inferredcites →https://doi.org/10.1016/s1055-7903(02)00332-9openalex-snapshot

Major patterns of higher teleostean phylogenies: a new perspective based on 100 complete mitochondrial DNA sequences

inferredcites →https://doi.org/10.1073/pnas.96.18.10261openalex-snapshot

Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: Hippopotamuses are the closest extant relatives of whales

inferredcites →https://doi.org/10.1080/00222936208651230openalex-snapshot

A basis for classifying the Sciaenid fishes of tropical West Africa

inferredcites →https://doi.org/10.1080/10635150290069913openalex-snapshot

An Approximately Unbiased Test of Phylogenetic Tree Selection

inferredcites →https://doi.org/10.1093/bib/bbn013openalex-snapshot

Recent developments in the MAFFT multiple sequence alignment program

inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1246openalex-snapshot

CONSEL: for assessing the confidence of phylogenetic tree selection

inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot

MRBAYES: Bayesian inference of phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/18.3.502openalex-snapshot

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot

Automatic annotation of organellar genomes with DOGMA

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msm092openalex-snapshot

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot

jModelTest: Phylogenetic Model Averaging

inferredcites →https://doi.org/10.1093/molbev/msq147openalex-snapshot

Evolutionary Origin and Phylogeny of the Modern Holocephalans (Chondrichthyes: Chimaeriformes): A Mitogenomic Perspective

inferredcites →https://doi.org/10.1093/nar/25.5.0955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot

Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis

inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

inferredcites →https://doi.org/10.1111/j.1096-3642.1977.tb00052.xopenalex-snapshot

The sciaenid fishes (croakers or drums) of the Indo‐West‐Pacific

inferredcites →https://doi.org/10.11369/jji1950.16.153openalex-snapshot

Comparative Osteology of the Sciaenid Fishes from Japan and Its Adjacent Waters?II.Vertebrae

inferredcites →https://doi.org/10.11369/jji1950.16.55openalex-snapshot

Comparative Osteology of the Sciaenid Fishes from Japan and Its Adjacent Waters-I.Neurocranium

inferredcites →https://doi.org/10.11369/jji1950.17.135openalex-snapshot

Comparative Osteology of the Sciaenid Fishes from Japan and Its Adjacent Waters-III.Premaxillary.and Dentary

inferredcites →https://doi.org/10.1186/1471-2148-11-177openalex-snapshot

Evolutionary history of Otophysi (Teleostei), a major clade of the modern freshwater fishes: Pangaean origin and Mesozoic radiation

inferredcites →https://doi.org/10.1266/ggs.81.29openalex-snapshot

The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes

inferredcites →https://doi.org/10.1306/e4fd3d51-1732-11d7-8645000102c1865dopenalex-snapshot

Abstract: Integrated Paleoecology and Marine Vertebrate Fauna of the Stone City Formation (Middle Eocene), Brazos River Section, Texas

inferredcites →https://doi.org/10.1371/journal.pone.0005297openalex-snapshot

Episodic Evolution and Adaptation of Chloroplast Genomes in Ancestral Grasses

inferredcites →https://doi.org/10.1371/journal.pone.0017410openalex-snapshot

Multiple Invasions into Freshwater by Pufferfishes (Teleostei: Tetraodontidae): A Mitogenomic Perspective

inferredcites →https://doi.org/10.2307/1440745openalex-snapshot

A Study in the Classification of the Sciaenoid Fishes of China, with Description of New Genera and Species

inferredcites →https://doi.org/10.2307/1441874openalex-snapshot

Evolution of Branchiostegals and Classification of Teleostome Fishes

inferredcites →https://doi.org/10.3160/0038-3872(2008)107[68:anemso]2.0.co;2openalex-snapshot

A New Early Miocene Species of Pogonias (Teleostei: Sciaenidae) Based on Otoliths from California

inferredcites →https://doi.org/10.3724/sp.j.1231.2012.27585openalex-snapshot

Molecular phylogenetic relationships of 13 Sciaenidae species in the China Sea based onRAG1gene sequences

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5852/ejt.2022.814.1745zenodo-depositor-declared

Middle and late Eocene fish otoliths from the eastern and southern USA

inferred← citeshttps://doi.org/10.1016/j.fishres.2021.106126openalex-snapshot

Allopatric divergence and secondary contact of two weak fish species (Macrodon ancylodon and Macrodon atricauda) from the South Atlantic

inferred← citeshttps://doi.org/10.1016/j.jsames.2020.102657openalex-snapshot

Amphi-American Neogene teleostean tropical fishes

inferred← citeshttps://doi.org/10.1016/j.ympev.2015.03.025openalex-snapshot

A multi-gene dataset reveals a tropical New World origin and Early Miocene diversification of croakers (Perciformes: Sciaenidae)

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.03.025openalex-snapshot

Phylogeny of the subfamily Stelliferinae suggests speciation in Ophioscion Gill, 1863 (Sciaenidae: Perciformes) in the western South Atlantic

inferred← citeshttps://doi.org/10.1016/j.zool.2016.08.004openalex-snapshot

Influence of cladogenesis on feeding structures in drums (Teleostei: Sciaenidae)

inferred← citeshttps://doi.org/10.1038/s41597-021-01045-zopenalex-snapshot

Chromosome-scale assembly and high-density genetic map of the yellow drum, Nibea albiflora

inferred← citeshttps://doi.org/10.1038/s41598-025-08793-7openalex-snapshot

Multilocus phylogeny and phylogeographical patterns suggest the need for a comprehensive revision of the systematics of Stelliferinae Sasaki, 1989 (Sciaenidae, Acanthuriformes)

inferred← citeshttps://doi.org/10.1080/24701394.2018.1431225openalex-snapshot

Fish DNA barcoding around large marine infrastructure for improved biodiversity assessment and monitoring

inferred← citeshttps://doi.org/10.1111/jfb.14913openalex-snapshot

Genome‐wide identification and transcriptome‐based expression profiling of the Sox gene family in the spinyhead croaker ( Collichthys lucidus )

inferred← citeshttps://doi.org/10.1111/zsc.12098openalex-snapshot

Tracking the history of an invasion: the freshwater croakers (Teleostei: Sciaenidae) in South America

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