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Complete mitochondrial genomes are not necessarily more informative than individual mitochondrial genes to recover a well-established annelid phylogeny
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/mpev.2000.0839openalex-snapshot
Use of Mitogenomic Information in Teleostean Molecular Phylogenetics: A Tree-Based Exploration under the Maximum-Parsimony Optimality Criterion
inferredcites →https://doi.org/10.1007/bf00161174openalex-snapshot
Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference
inferredcites →https://doi.org/10.1007/s00239-003-0039-7openalex-snapshot
Reanalysis of Murphy et al.?s Data Gives Various Mammalian Phylogenies and Suggests Overcredibility of Bayesian Trees
inferredcites →https://doi.org/10.1016/j.cub.2015.06.007openalex-snapshot
The Evolution of Annelids Reveals Two Adaptive Routes to the Interstitial Realm
inferredcites →https://doi.org/10.1016/j.cub.2015.06.068openalex-snapshot
Spiralian Phylogeny Informs the Evolution of Microscopic Lineages
inferredcites →https://doi.org/10.1016/j.ympev.2010.04.024openalex-snapshot
FASconCAT: Convenient handling of data matrices
inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot
MITOS: Improved de novo metazoan mitochondrial genome annotation
inferredcites →https://doi.org/10.1016/j.ympev.2012.11.017openalex-snapshot
Mitogenomics does not resolve deep molluscan relationships (yet?)
inferredcites →https://doi.org/10.1016/j.ympev.2013.01.010openalex-snapshot
Deep metazoan phylogeny: When different genes tell different stories
inferredcites →https://doi.org/10.1016/j.ympev.2013.03.033openalex-snapshot
A comparative analysis of complete mitochondrial genomes among Hexapoda
inferredcites →https://doi.org/10.1016/j.ympev.2013.05.002openalex-snapshot
A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny
inferredcites →https://doi.org/10.1016/j.ympev.2014.06.003openalex-snapshot
Incongruence among different mitochondrial regions: A case study using complete mitogenomes
inferredcites →https://doi.org/10.1016/j.ympev.2015.08.008openalex-snapshot
Evolution of mitochondrial gene order in Annelida
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.2109openalex-snapshot
jModelTest 2: more models, new heuristics and parallel computing
inferredcites →https://doi.org/10.1080/10635150500541672openalex-snapshot
Evolutionary Rates, Divergence Dates, and the Performance of Mitochondrial Genes in Bayesian Phylogenetic Analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot
ProtTest: selection of best-fit models of protein evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btm135openalex-snapshot
TOPD/FMTS: a new software to compare phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/icb/icj052openalex-snapshot
A review of molecular markers used for Annelid phylogenetics
inferredcites →https://doi.org/10.1093/molbev/msg042openalex-snapshot
Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability
inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
inferredcites →https://doi.org/10.1093/molbev/msu080openalex-snapshot
Illuminating the Base of the Annelid Tree Using Transcriptomics
inferredcites →https://doi.org/10.1093/molbev/msv157openalex-snapshot
Articulating “Archiannelids”: Phylogenomics and Annelid Relationships, with Emphasis on Meiofaunal Taxa
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkt371openalex-snapshot
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025613openalex-snapshot
Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025661openalex-snapshot
Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates
inferredcites →https://doi.org/10.1093/sysbio/34.1.75openalex-snapshot
The Use of Tree Comparison Metrics
inferredcites →https://doi.org/10.1093/sysbio/42.2.126openalex-snapshot
Distributions of Tree Comparison Metrics--Some New Results
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot
Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/j.1096-0031.2006.00128.xopenalex-snapshot
A molecular phylogeny of annelids
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04170.xopenalex-snapshot
Phylogeography of the common ragworm Hediste diversicolor (Polychaeta: Nereididae) reveals cryptic diversity and multiple colonization events across its distribution
inferredcites →https://doi.org/10.1111/j.1463-6409.1997.tb00412.xopenalex-snapshot
Cladistics and polychaetes
inferredcites →https://doi.org/10.1111/j.1463-6409.2004.00146.xopenalex-snapshot
18S rDNA phylogeny of Clitellata (Annelida)
inferredcites →https://doi.org/10.1111/j.1469-185x.2012.00240.xopenalex-snapshot
Understanding phylogenetic incongruence: lessons from phyllostomid bats
inferredcites →https://doi.org/10.1146/annurev-ecolsys-120213-091627openalex-snapshot
Animal Phylogeny and Its Evolutionary Implications
inferredcites →https://doi.org/10.1146/annurev.ento.45.1.1openalex-snapshot
The Current State Of Insect Molecular Systematics: A Thriving Tower of Babel
inferredcites →https://doi.org/10.1186/1471-2148-11-315openalex-snapshot
What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny
inferredcites →https://doi.org/10.1186/1471-2148-13-263openalex-snapshot
Scent of a break-up: phylogeography and reproductive trait divergences in the red-tailed bumblebee (Bombus lapidarius)
inferredcites →https://doi.org/10.1186/1471-2148-7-57openalex-snapshot
Annelid phylogeny and the status of Sipuncula and Echiura
inferredcites →https://doi.org/10.1186/1471-2148-9-189openalex-snapshot
Phylogeny of Annelida (Lophotrochozoa): total-evidence analysis of morphology and six genes
inferredcites →https://doi.org/10.1371/journal.pbio.1000602openalex-snapshot
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
inferredcites →https://doi.org/10.1371/journal.pone.0084080openalex-snapshot
Performance of Single and Concatenated Sets of Mitochondrial Genes at Inferring Metazoan Relationships Relative to Full Mitogenome Data
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.4137/ebo.s9656openalex-snapshot
Efficiency of Nuclear and Mitochondrial Markers Recovering and Supporting Known Amniote Groups
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/s13127-023-00608-9zenodo-depositor-declared
Nereididae (Annelida) phylogeny based on molecular data
inferred← citeshttps://doi.org/10.1002/ajp.70017openalex-snapshot
Mitochondrial DNA for Phylogeny Building: Assessing Individual and Grouped mtGenes as Proxies for the mtGenome in Platyrrhines
inferred← citeshttps://doi.org/10.1007/s12686-018-0986-3openalex-snapshot
The complete mitochondrial genome of the sea star Echinaster (Othilia) brasiliensis (Asteroidea: Echinasteridae)
inferred← citeshttps://doi.org/10.1007/s41208-026-01115-2openalex-snapshot
Relationship of Hediste (Annelida, Polychaeta) and the description of the complete mitochondrial genome of Hediste sinesimplex Costa et al., 2025, including a status reassessment of some Nereididae species
inferred← citeshttps://doi.org/10.1016/j.dsr.2018.05.005openalex-snapshot
A new species of xylophilic fireworm (Annelida: Amphinomidae: Cryptonome) from deep-sea wood falls in the SW Atlantic
inferred← citeshttps://doi.org/10.1016/j.dsr.2024.104415openalex-snapshot
A new species of Erinaceusyllis (Annelida: Syllidae) discovered at a wood-fall in the eastern Clarion-Clipperton zone, central Pacific ocean
inferred← citeshttps://doi.org/10.1016/j.gene.2016.12.024openalex-snapshot
Mitochondrial genome of the Christmas tree worm Spirobranchus giganteus (Annelida: Serpulidae) reveals a high substitution rate among annelids
inferred← citeshttps://doi.org/10.1016/j.gene.2021.146159openalex-snapshot
First mitochondrial genomes of Chrysopetalidae (Annelida) from shallow-water and deep-sea chemosynthetic environments
inferred← citeshttps://doi.org/10.1080/23802359.2021.1872431openalex-snapshot
Mitochondrial genome of Sabella spallanzanii (Gmelin, 1791) (Sabellida: Sabellidae)
inferred← citeshttps://doi.org/10.1093/mollus/eyw044openalex-snapshot
Testing the contribution of individual genes in mitochondrial genomes for assessing phylogenetic relationships in Vetigastropoda
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaa032openalex-snapshot
Hidden diversity within the Diopatra cuprea complex (Annelida: Onuphidae): morphological and genetics analyses reveal four new species in the south-west Atlantic
inferred← citeshttps://doi.org/10.1111/syen.12604openalex-snapshot
Phylomitogenomics reveals mito‐nuclear concordance in social wasps: The performance of mitochondrial markers and gene order for hymenopteran systematics
inferred← citeshttps://doi.org/10.1111/zsc.12413openalex-snapshot
The phylogeny of Nereididae (Annelida) based on mitochondrial genomes
inferred← citeshttps://doi.org/10.1186/s12862-017-1012-1openalex-snapshot
The influence of molecular markers and methods on inferring the phylogenetic relationships between the representatives of the Arini (parrots, Psittaciformes), determined on the basis of their complete mitochondrial genomes
inferred← citeshttps://doi.org/10.1186/s12864-020-07176-8openalex-snapshot
Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.15406/mojpb.2017.06.00196openalex-snapshot
Selecting Molecular Markers for a Specific Phylogenetic Problem
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278495openalex-snapshot
Additional file 10 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278498openalex-snapshot
Additional file 11 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278501openalex-snapshot
Additional file 12 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278504openalex-snapshot
Additional file 13 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278507openalex-snapshot
Additional file 14 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278510openalex-snapshot
Additional file 15 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278513openalex-snapshot
Additional file 16 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278516openalex-snapshot
Additional file 17 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278519openalex-snapshot
Additional file 1 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278522openalex-snapshot
Additional file 2 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278525openalex-snapshot
Additional file 3 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278528openalex-snapshot
Additional file 4 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278531openalex-snapshot
Additional file 5 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278534openalex-snapshot
Additional file 6 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278537openalex-snapshot
Additional file 7 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278540openalex-snapshot
Additional file 8 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.6084/m9.figshare.13278543openalex-snapshot
Additional file 9 of Extensive gene rearrangements in the mitogenomes of congeneric annelid species and insights on the evolutionary history of the genus Ophryotrocha
inferred← citeshttps://doi.org/10.7287/peerj.3661v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.3661v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.3661v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.3661v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.16706openalex-snapshot
Performance of tree-building methods using a morphological dataset and a well-supported Hexapoda phylogeny
inferred← citeshttps://doi.org/10.7717/peerj.3661openalex-snapshot
Comparative mitogenomic analysis of mirid bugs (Hemiptera: Miridae) and evaluation of potential DNA barcoding markers
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