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Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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PHYLIP (Phylogeny Inference Package)
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PHYLIP ( PHYLogeny Inference Package)
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Maltose-binding protein from the hyperthermophilic bacterium Thermotoga maritima: stability and binding properties
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Pectin: cell biology and prospects for functional analysis
inferredcites →https://doi.org/10.1007/bf00409880openalex-snapshot
Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90�C
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Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium
inferredcites →https://doi.org/10.1007/s00792-013-0596-7openalex-snapshot
Kosmotoga pacifica sp. nov., a thermophilic chemoorganoheterotrophic bacterium isolated from an East Pacific hydrothermal sediment
inferredcites →https://doi.org/10.1007/s10482-011-9576-zopenalex-snapshot
Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups
inferredcites →https://doi.org/10.1007/s10482-013-0062-7openalex-snapshot
Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.)…
inferredcites →https://doi.org/10.1007/s10482-015-0571-7openalex-snapshot
Erratum to: Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and…
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Bergey's manual of systematic bacteriology
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Towards molecular biomarkers for biogas production from lignocellulose-rich substrates
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Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage
inferredcites →https://doi.org/10.1016/j.biortech.2011.12.020openalex-snapshot
Effect of continuous oleate addition on microbial communities involved in anaerobic digestion process
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The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology
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Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor
inferredcites →https://doi.org/10.1016/j.jbiotec.2009.02.010openalex-snapshot
Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing
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Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing
inferredcites →https://doi.org/10.1016/j.jbiotec.2015.03.006openalex-snapshot
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant
inferredcites →https://doi.org/10.1016/j.phytochem.2003.08.016openalex-snapshot
Cupins: the most functionally diverse protein superfamily?
inferredcites →https://doi.org/10.1016/j.syapm.2013.03.006openalex-snapshot
Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation
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Comparative genotyping of Clostridium thermocellum strains isolated from biogas plants: Genetic markers and characterization of cellulolytic potential
inferredcites →https://doi.org/10.1016/s0304-4165(99)00172-5openalex-snapshot
Physiological aspects of chitin catabolism in marine bacteria
inferredcites →https://doi.org/10.1016/s0360-3199(02)00115-5openalex-snapshot
Distinctive properties of high hydrogen producing extreme thermophiles, Caldicellulosiruptor saccharolyticus and Thermotoga elfii
inferredcites →https://doi.org/10.1016/s0378-1097(03)00055-7openalex-snapshot
Methanogenic population structure in a variety of anaerobic bioreactors
inferredcites →https://doi.org/10.1016/s1369-5274(03)00056-0openalex-snapshot
Microbial hemicellulases
inferredcites →https://doi.org/10.1021/ja00854a064openalex-snapshot
Conformation of the tetrasaccharide stachyose
inferredcites →https://doi.org/10.1023/a:1010662911148openalex-snapshot
Pectin: cell biology and prospects for functional analysis
inferredcites →https://doi.org/10.1038/20601openalex-snapshot
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
inferredcites →https://doi.org/10.1080/09593330.2010.484076openalex-snapshot
The genusThermotoga: recent developments
inferredcites →https://doi.org/10.1093/bioinformatics/bti553openalex-snapshot
ACT: the Artemis comparison tool
inferredcites →https://doi.org/10.1093/bioinformatics/btr252openalex-snapshot
FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes
inferredcites →https://doi.org/10.1093/jb/mvv058openalex-snapshot
Molecular and biochemical characterization of bifunctional pyruvate decarboxylases and pyruvate ferredoxin oxidoreductases fromThermotoga maritimaandThermotoga hypogea
inferredcites →https://doi.org/10.1093/molbev/msm092openalex-snapshot
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
inferredcites →https://doi.org/10.1093/nar/28.1.33openalex-snapshot
The COG database: a tool for genome-scale analysis of protein functions and evolution
inferredcites →https://doi.org/10.1093/nar/29.1.22openalex-snapshot
The COG database: new developments in phylogenetic classification of proteins from complete genomes
inferredcites →https://doi.org/10.1093/nar/gkg312openalex-snapshot
GenDB--an open source genome annotation system for prokaryote genomes
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gks479openalex-snapshot
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
inferredcites →https://doi.org/10.1093/nar/gku950openalex-snapshot
The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
inferredcites →https://doi.org/10.1099/00207713-45-2-308openalex-snapshot
Thermotoga elfii sp. nov., a Novel Thermophilic Bacterium from an African Oil-Producing Well
inferredcites →https://doi.org/10.1099/00207713-47-4-1013openalex-snapshot
Thermotoga hypogea sp. nov., a Xylanolytic, Thermophilic Bacterium from an Oil-Producing Well
inferredcites →https://doi.org/10.1099/00207713-48-3-1007openalex-snapshot
Petrotoga mobilis sp. nov., from a North Sea oil-production well
inferredcites →https://doi.org/10.1099/00207713-51-5-1901openalex-snapshot
Thermotoga petrophila sp. nov. and Thermotoga naphthophila sp. nov., two hyperthermophilic bacteria from the Kubiki oil reservoir in Niigata, Japan.
inferredcites →https://doi.org/10.1099/00207713-52-4-1361openalex-snapshot
Thermotoga lettingae sp. nov., a novel thermophilic, methanol-degrading bacterium isolated from a thermophilic anaerobic reactor.
inferredcites →https://doi.org/10.1099/ijs.0.033720-0openalex-snapshot
Defluviitoga tunisiensis gen. nov., sp. nov., a thermophilic bacterium isolated from a mesothermic and anaerobic whey digester
inferredcites →https://doi.org/10.1099/ijs.0.059691-0openalex-snapshot
Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor
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Identification of a novel cellulose‐binding domain the multidomain 120 kDa xylanase XynA of the hyperthermophilic bacterium Thermotoga maritima
inferredcites →https://doi.org/10.1111/j.1574-6941.2011.01265.xopenalex-snapshot
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing
inferredcites →https://doi.org/10.1111/j.1574-6976.2006.00039.xopenalex-snapshot
Microbial biochemistry, physiology, and biotechnology of hyperthermophilicThermotogaspecies
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Hyperthermophilic Thermotoga Species Differ with Respect to Specific Carbohydrate Transporters and Glycoside Hydrolases
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A New Sulfur-Reducing, Extremely Thermophilic Eubacterium from a Submarine Thermal Vent
inferredcites →https://doi.org/10.1128/aem.72.1.811-818.2006openalex-snapshot
The Thermotoga maritima Phenotype Is Impacted by Syntrophic Interaction with Methanococcus jannaschii in Hyperthermophilic Coculture
inferredcites →https://doi.org/10.1128/jb.01136-12openalex-snapshot
Diversity and Versatility of the Thermotoga maritima Sugar Kinome
inferredcites →https://doi.org/10.1128/jb.01430-12openalex-snapshot
Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3
inferredcites →https://doi.org/10.1128/jb.187.14.4935-4944.2005openalex-snapshot
Gene Transfer and Genome Plasticity in Thermotoga maritima , a Model Hyperthermophilic Species
inferredcites →https://doi.org/10.1128/jb.188.7.2364-2374.2006openalex-snapshot
Chromosome Evolution in the Thermotogales : Large-Scale Inversions and Strain Diversification of CRISPR Sequences
inferredcites →https://doi.org/10.1186/1471-2105-10-154openalex-snapshot
EDGAR: A software framework for the comparative analysis of prokaryotic genomes
inferredcites →https://doi.org/10.1186/1471-2164-12-444openalex-snapshot
WebMGA: a customizable web server for fast metagenomic sequence analysis
inferredcites →https://doi.org/10.1186/1471-2180-12-121openalex-snapshot
Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation
inferredcites →https://doi.org/10.1186/s12934-015-0242-4openalex-snapshot
Engineering Saccharomyces pastorianus for the co-utilisation of xylose and cellulose from biomass
inferredcites →https://doi.org/10.1186/s13068-014-0193-8openalex-snapshot
Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
inferredcites →https://doi.org/10.1186/s13287-015-0011-7openalex-snapshot
Pullulan: a new cytoadhesive for cell-mediated cartilage repair
inferredcites →https://doi.org/10.1371/journal.pone.0014519openalex-snapshot
Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing
inferredcites →https://doi.org/10.3389/fmicb.2012.00340openalex-snapshot
Metabolism of Oligosaccharides and Starch in Lactobacilli: A Review
inferredcites →https://doi.org/10.3389/fmicb.2013.00244openalex-snapshot
Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima
inferredcites →https://doi.org/10.3389/fpls.2011.00070openalex-snapshot
Trehalose-6-Phosphate: Connecting Plant Metabolism and Development
inferredcites →https://doi.org/10.4056/sigs.3016383openalex-snapshot
Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Temperature-Phased Anaerobic Digestion Effectively Removes Antibiotic Resistance Genes in Sludge
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Nexus between the microbial diversity level and the stress tolerance within the biogas process
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Microbial profiling during anaerobic digestion of cheese whey in reactors operated at different conditions
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Towards centralized biogas plants: Co-digestion of sewage sludge and pig manure maintains process performance and active microbiome diversity
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Enhancing the performance of thermophilic anaerobic digestion of food waste by introducing a hybrid anaerobic membrane bioreactor
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Comparative analysis of hydrogen production and bacterial communities in mesophilic and thermophilic consortia using multiple inoculum sources
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Comparison of microbiome community structure and dynamics during anaerobic digestion of different renewable solid wastes
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Simultaneous Phosphorus Recovery in Energy Generation Reactor (SPRING): High Rate Thermophilic Blackwater Treatment
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Metagenomic binning reveals the functional roles of core abundant microorganisms in twelve full-scale biogas plants
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Syntrophic acetate oxidation replaces acetoclastic methanogenesis during thermophilic digestion of biowaste
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Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
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Exploration of microbial communities contributing to effective methane production from scum under anaerobic digestion
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Efficient Two-Stage Meso- and Thermophilic Anaerobic Digestion of Food Waste from a Microbial Perspective
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Thermophilic Anaerobic Digestion: An Advancement towards Enhanced Biogas Production from Lignocellulosic Biomass
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Anaerobic Digestion of the Organic Fraction of Municipal Solid Waste in Plug-Flow Reactors: Focus on Bacterial Community Metabolic Pathways
inferred← citeshttps://doi.org/10.3390/w18111313openalex-snapshot
Effects of Temperature and Organic Loading Rates on the Performance of an Anaerobic Sequencing Batch Reactor (ASBR) Treating High-Strength Food Waste Wastewater
inferred← citeshttps://doi.org/10.3934/environsci.2026003openalex-snapshot
Process stability and microbial adaptation during temperature shift from thermophilic to mesophilic temperature in anaerobic digestion
inferred← citeshttps://doi.org/10.4014/jmb.1605.05083openalex-snapshot
Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
inferred← citeshttps://doi.org/10.5772/intechopen.82815openalex-snapshot
Microbial Responses to Different Operating Practices for Biogas Production Systems
inferred← citeshttps://doi.org/10.6084/m9.figshare.12262940openalex-snapshot
Additional file 1 of Microbial community dynamics in mesophilic and thermophilic batch reactors under methanogenic, phenyl acid-forming conditions
inferred← citeshttps://doi.org/10.6084/m9.figshare.26646598openalex-snapshot
Additional file 1 of Energetically exploiting lignocellulose-rich residues in anaerobic digestion technologies: from bioreactors to proteogenomics
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