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Light Triggers the miRNA-Biogenetic Inconsistency for De-etiolated Seedling Survivability in Arabidopsis thaliana

https://doi.org/10.1016/j.molp.2019.10.011

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jcp.25125openalex-snapshot

MicroRNAs in Control of Plant Development

inferredcites →https://doi.org/10.1006/scdb.1999.0287openalex-snapshot

Signalling in light-controlled development

inferredcites →https://doi.org/10.1007/978-94-011-1884-2openalex-snapshot

Photomorphogenesis in Plants

inferredcites →https://doi.org/10.1007/978-94-011-1884-2_9openalex-snapshot

Signal transduction in phytochrome responses

inferredcites →https://doi.org/10.1007/s00438-016-1253-5openalex-snapshot

Integrated RNA-seq and sRNA-seq analysis reveals miRNA effects on secondary metabolism in Solanum tuberosum L

inferredcites →https://doi.org/10.1016/j.cell.2011.03.024openalex-snapshot

Arabidopsis Argonaute10 Specifically Sequesters miR166/165 to Regulate Shoot Apical Meristem Development

inferredcites →https://doi.org/10.1016/j.cell.2012.09.039openalex-snapshot

Fast-Forward Genetics Identifies Plant CPL Phosphatases as Regulators of miRNA Processing Factor HYL1

inferredcites →https://doi.org/10.1016/j.cub.2005.07.029openalex-snapshot

Methylation Protects miRNAs and siRNAs from a 3′-End Uridylation Activity in Arabidopsis

inferredcites →https://doi.org/10.1016/j.devcel.2017.05.008openalex-snapshot

The Protein Phosphatase 4 and SMEK1 Complex Dephosphorylates HYL1 to Promote miRNA Biogenesis by Antagonizing the MAPK Cascade in Arabidopsis

inferredcites →https://doi.org/10.1016/j.devcel.2018.06.014openalex-snapshot

A Quick HYL1-Dependent Reactivation of MicroRNA Production Is Required for a Proper Developmental Response after Extended Periods of Light Deprivation

inferredcites →https://doi.org/10.1016/j.febslet.2005.07.071openalex-snapshot

microRNA biogenesis and function in plants

inferredcites →https://doi.org/10.1016/j.molcel.2018.01.007openalex-snapshot

Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway

inferredcites →https://doi.org/10.1016/j.pbi.2018.05.007openalex-snapshot

Actions of plant Argonautes: predictable or unpredictable?

inferredcites →https://doi.org/10.1016/j.str.2010.02.006openalex-snapshot

Structure of Arabidopsis HYPONASTIC LEAVES1 and Its Molecular Implications for miRNA Processing

inferredcites →https://doi.org/10.1016/j.tplants.2012.01.010openalex-snapshot

Functions of microRNAs in plant stress responses

inferredcites →https://doi.org/10.1016/s0092-8674(00)00184-7openalex-snapshot

The C Termini of Arabidopsis Cryptochromes Mediate a Constitutive Light Response

inferredcites →https://doi.org/10.1016/s0092-8674(00)80842-9openalex-snapshot

FKF1, a Clock-Controlled Gene that Regulates the Transition to Flowering in Arabidopsis

inferredcites →https://doi.org/10.1016/s0092-8674(04)00045-5openalex-snapshot

MicroRNAs

inferredcites →https://doi.org/10.1038/ncomms3145openalex-snapshot

The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development

inferredcites →https://doi.org/10.1038/ncomms6867openalex-snapshot

COP1 E3 ligase protects HYL1 to retain microRNA biogenesis

inferredcites →https://doi.org/10.1038/nrg2936openalex-snapshot

Gene silencing by microRNAs: contributions of translational repression and mRNA decay

inferredcites →https://doi.org/10.1038/nsmb.2646openalex-snapshot

Bidirectional processing of pri-miRNAs with branched terminal loops by Arabidopsis Dicer-like1

inferredcites →https://doi.org/10.1038/s41467-017-00404-yopenalex-snapshot

Phytochrome-interacting factors directly suppress MIR156 expression to enhance shade-avoidance syndrome in Arabidopsis

inferredcites →https://doi.org/10.1038/s41586-018-0135-xopenalex-snapshot

SWI2/SNF2 ATPase CHR2 remodels pri-miRNAs via Serrate to impede miRNA production

inferredcites →https://doi.org/10.1046/j.1365-313x.2003.01770.xopenalex-snapshot

HFR1, a putative bHLH transcription factor, mediates both phytochrome A and cryptochrome signalling

inferredcites →https://doi.org/10.1073/pnas.0403115101openalex-snapshot

Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions

inferredcites →https://doi.org/10.1073/pnas.0405570102openalex-snapshot

Nuclear processing and export of microRNAs in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.0804218105openalex-snapshot

The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis

inferredcites →https://doi.org/10.1073/pnas.1204915109openalex-snapshot

Regulation of miRNA abundance by RNA binding protein TOUGH in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.1407147112openalex-snapshot

Phytochrome controls alternative splicing to mediate light responses in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.161300998openalex-snapshot

Multiple transcription-factor genes are early targets of phytochrome A signaling

inferredcites →https://doi.org/10.1073/pnas.1613069114openalex-snapshot

STV1, a ribosomal protein, binds primary microRNA transcripts to promote their interaction with the processing complex in Arabidopsis

inferredcites →https://doi.org/10.1073/pnas.1619755114openalex-snapshot

KETCH1 imports HYL1 to nucleus for miRNA biogenesis in Arabidopsis

inferredcites →https://doi.org/10.1093/jxb/ers061openalex-snapshot

The expression of phototropins in Arabidopsis leaves: developmental and light regulation

inferredcites →https://doi.org/10.1093/nar/gks1309openalex-snapshot

STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis

inferredcites →https://doi.org/10.1093/nar/gky853openalex-snapshot

Efficiency and precision of microRNA biogenesis modes in plants

inferredcites →https://doi.org/10.1093/nar/gkz526openalex-snapshot

Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana

inferredcites →https://doi.org/10.1101/gad.14.3.257openalex-snapshot

Light: an indicator of time and place

inferredcites →https://doi.org/10.1101/gad.1444406openalex-snapshot

Extensive post-transcriptional regulation of microRNAs and its implications for cancer

inferredcites →https://doi.org/10.1104/pp.103.029439openalex-snapshot

A Genome-Wide Analysis of Blue-Light Regulation of Arabidopsis Transcription Factor Gene Expression during Seedling Development

inferredcites →https://doi.org/10.1104/pp.103.036293openalex-snapshot

The Effect of α -Amanitin on the Arabidopsis Seed Proteome Highlights the Distinct Roles of Stored and Neosynthesized mRNAs during Germination

inferredcites →https://doi.org/10.1104/pp.104.4.1139openalex-snapshot

Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development

inferredcites →https://doi.org/10.1104/pp.120.2.605openalex-snapshot

Arabidopsis Contains at Least Four Independent Blue-Light-Activated Signal Transduction Pathways1

inferredcites →https://doi.org/10.1104/pp.123.1.39openalex-snapshot

Photoreceptors and Regulation of Flowering Time

inferredcites →https://doi.org/10.1104/pp.15.01188openalex-snapshot

Light-Inducible MiR163 Targets PXMT1 Transcripts to Promote Seed Germination and Primary Root Elongation in Arabidopsis

inferredcites →https://doi.org/10.1104/pp.17.01743openalex-snapshot

Synthetic MicroProteins: Versatile Tools for Posttranslational Regulation of Target Proteins

inferredcites →https://doi.org/10.1105/tpc.000646openalex-snapshot

Blue Light Receptors and Signal Transduction

inferredcites →https://doi.org/10.1105/tpc.104.029165openalex-snapshot

HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-Type Zinc Finger Protein, Regulates Phytochrome B–Mediated Red and Cryptochrome-Mediated Blue Light Responses

inferredcites →https://doi.org/10.1105/tpc.105.031625openalex-snapshot

Auxin and Light Control of Adventitious Rooting in Arabidopsis Require ARGONAUTE1

inferredcites →https://doi.org/10.1105/tpc.112.105882openalex-snapshot

NOT2 Proteins Promote Polymerase II–Dependent Transcription and Interact with Multiple MicroRNA Biogenesis Factors in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.114.126722openalex-snapshot

HUA ENHANCER1 Is Involved in Posttranscriptional Regulation of Positive and Negative Regulators in Arabidopsis Photomorphogenesis

inferredcites →https://doi.org/10.1105/tpc.12.12.2351openalex-snapshot

A Mutation in the Arabidopsis HYL1 Gene Encoding a dsRNA Binding Protein Affects Responses to Abscisic Acid, Auxin, and Cytokinin

inferredcites →https://doi.org/10.1105/tpc.17.00370openalex-snapshot

The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing

inferredcites →https://doi.org/10.1105/tpc.18.00556openalex-snapshot

The PROTEIN PHOSPHATASE4 Complex Promotes Transcription and Processing of Primary microRNAs in Arabidopsis

inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02835.xopenalex-snapshot

SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03508.xopenalex-snapshot

CRY1 inhibits COP1‐mediated degradation of BIT1, a MYB transcription factor, to activate blue light‐dependent gene expression in Arabidopsis

inferredcites →https://doi.org/10.1111/j.1365-313x.2010.04426.xopenalex-snapshot

Genome‐wide mapping of the HY5 ‐mediated genenetworks in Arabidopsis that involve both transcriptional and post‐transcriptional regulation

inferredcites →https://doi.org/10.1111/php.12550openalex-snapshot

Acute Effects of Light on Alternative Splicing in Light‐Grown Plants

inferredcites →https://doi.org/10.1111/tpj.12308openalex-snapshot

RACK 1 scaffold proteins influence mi RNA abundance in Arabidopsis

inferredcites →https://doi.org/10.1126/science.aaf9030openalex-snapshot

Photoactivation and inactivation of Arabidopsis cryptochrome 2

inferredcites →https://doi.org/10.1186/s13104-016-2367-xopenalex-snapshot

Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves

inferredcites →https://doi.org/10.1199/tab.0148openalex-snapshot

Phytochrome Signaling Mechanisms

inferredcites →https://doi.org/10.1199/tab.0157openalex-snapshot

Shade Avoidance

inferredcites →https://doi.org/10.1261/rna.2146906openalex-snapshot

The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis

inferredcites →https://doi.org/10.1261/rna.2248605openalex-snapshot

MicroRNA function: Multiple mechanisms for a tiny RNA?: FIGURE 1.

inferredcites →https://doi.org/10.1371/journal.pgen.1006422openalex-snapshot

Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis

inferredcites →https://doi.org/10.1371/journal.pgen.1006753openalex-snapshot

The SnRK2 kinases modulate miRNA accumulation in Arabidopsis

inferredcites →https://doi.org/10.1371/journal.pgen.1007247openalex-snapshot

Coordinated regulation of Arabidopsis microRNA biogenesis and red light signaling through Dicer-like 1 and phytochrome-interacting factor 4

inferredcites →https://doi.org/10.3389/fpls.2014.00156openalex-snapshot

A survey of the small RNA population during far-red light-induced apical hook opening

inferredcites →https://doi.org/10.3389/fpls.2015.00372openalex-snapshot

Genome-wide identification of microRNAs and their targets in wild type and phyB mutant provides a key link between microRNAs and the phyB-mediated light signaling pathway in rice

inferredcites →https://doi.org/10.3389/fpls.2015.00410openalex-snapshot

Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Dehydration-Induced Phase Transition of Argonaute1 (Ago1) Attenuates Rna-Induced Silencing Complex (Risc) Activity

inferred← citeshttps://doi.org/10.1007/978-981-95-0772-6_8openalex-snapshot

Etioplast to Chloroplast Transition in Higher Plants

inferred← citeshttps://doi.org/10.1007/s00299-026-03771-3openalex-snapshot

Epigenetic regulation under light and temperature fluctuations: chromatin remodeling and transcriptional memory in plants

inferred← citeshttps://doi.org/10.1007/s00344-026-12116-zopenalex-snapshot

Metabolomics Analysis Reveals the Pathway and Metabolites Related to Allelic Differences in Eating Quality between the Wxb and Wxin Alleles in Rice (Oryza Sativa L.)

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inferred← citeshttps://doi.org/10.1007/s12298-025-01596-0openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.bbamcr.2022.119304openalex-snapshot

Role of plant microRNAs and their corresponding pathways in fluctuating light conditions

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Emerging Roles for Phase Separation in Plants

inferred← citeshttps://doi.org/10.1016/j.ecoenv.2020.111056openalex-snapshot

Strontium stress disrupts miRNA biogenesis by reducing HYL1 protein levels in Arabidopsis

inferred← citeshttps://doi.org/10.1016/j.envexpbot.2023.105345openalex-snapshot

Phosphorylation of PIF3 by MPK6 is required for coordinated regulation of miRNA biogenesis and hypocotyl elongation in Arabidopsis

inferred← citeshttps://doi.org/10.1016/j.fmre.2023.02.023openalex-snapshot

microRNA biogenesis and stabilization in plants

inferred← citeshttps://doi.org/10.1016/j.jbiotec.2020.11.018openalex-snapshot

Effect of red light on photosynthetic acclimation and the gene expression of certain light signalling components involved in the microRNA biogenesis in the extremophile Eutrema salsugineum

inferred← citeshttps://doi.org/10.1016/j.molp.2021.01.006openalex-snapshot

MicroProteins: Expanding functions and novel modes of regulation

inferred← citeshttps://doi.org/10.1016/j.molp.2021.01.020openalex-snapshot

Light-stabilized FHA2 suppresses miRNA biogenesis through interactions with DCL1 and HYL1

inferred← citeshttps://doi.org/10.1016/j.molp.2021.02.009openalex-snapshot

Forkhead-associated domain 2 links light signal to miRNA biogenesis

inferred← citeshttps://doi.org/10.1073/pnas.2116757119openalex-snapshot

HYL1-CLEAVAGE SUBTILASE 1 (HCS1) suppresses miRNA biogenesis in response to light-to-dark transition

inferred← citeshttps://doi.org/10.1073/pnas.2208415119openalex-snapshot

Arabidopsis AAR2, a conserved splicing factor in eukaryotes, acts in microRNA biogenesis

inferred← citeshttps://doi.org/10.1073/pnas.2216006120openalex-snapshot

Intrinsically disordered proteins SAID1/2 condensate on SERRATE for dual inhibition of miRNA biogenesis in Arabidopsis

inferred← citeshttps://doi.org/10.1080/15476286.2021.1899491openalex-snapshot

Recent advances in the regulation of plant miRNA biogenesis

inferred← citeshttps://doi.org/10.1093/hr/uhaf312openalex-snapshot

Identification of specific miRNAs in early-stage mung bean ( Vigna radiata ) using DNA/AgNCs sensors and miRNAtome analysis

inferred← citeshttps://doi.org/10.1093/nar/gkaf1012openalex-snapshot

Plant-specific BLISTER modulates miRNA biogenesis by regulating MIR transcription, HYL1 phosphorylation, and nuclear transport in Arabidopsis

inferred← citeshttps://doi.org/10.1093/plcell/koad132openalex-snapshot

The HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE15–HISTONE DEACETYLASE9 complex associates with HYPONASTIC LEAVES 1 to modulate microRNA expression in response to abscisic acid signaling

inferred← citeshttps://doi.org/10.1093/plcell/koae075openalex-snapshot

Proteolytic control of the RNA silencing machinery

inferred← citeshttps://doi.org/10.1101/2022.09.13.507836openalex-snapshot

Intrinsically disordered proteins SAID1/2 condensate on SERRATE/ARS2 for dual inhibition of miRNA biogenesis in Arabidopsis

inferred← citeshttps://doi.org/10.1111/nph.17691openalex-snapshot

Serrate‐Associated Protein 1, a splicing‐related protein, promotes miRNA biogenesis in Arabidopsis

inferred← citeshttps://doi.org/10.1126/sciadv.abm8435openalex-snapshot

PRP4KA phosphorylates SERRATE for degradation via 20 S proteasome to fine-tune miRNA production in Arabidopsis

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MicroRNA biogenesis and activity in plant cell dedifferentiation stimulated by cell wall removal

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Plastid retrograde regulation of miRNA expression in response to light stress

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The miR156: A Master Regulator to Harmonize Complex Biofuel Traits in Lignocellulosic Biomass Crops

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Combined Stress Conditions in Melon Induce Non-additive Effects in the Core miRNA Regulatory Network

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Mechanisms of MicroRNA Biogenesis and Stability Control in Plants

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In Arabidopsis thaliana, RNA-Induced Silencing Complex-Loading of MicroRNAs Plays a Minor Regulatory Role During Photomorphogenesis Except for miR163

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Integrated Expression Analysis of Small RNA, Degradome and Microarray Reveals Complex Regulatory Action of miRNA during Prolonged Shade in Swarnaprabha Rice

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Small RNA and mRNA Sequencing Reveal the Roles of microRNAs Involved in Pomegranate Female Sterility

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