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Contrasting Euryarchaeota communities between upland and paddy soils exhibited similar pH-impacted biogeographic patterns

https://doi.org/10.1016/j.soilbio.2013.04.003
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Distribution of Cren- and Euryarchaeota in Scots Pine Mycorrhizospheres and Boreal Forest Humus
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Insights into extreme thermoacidophily based on genome analysis of Picrophilus torridus and other thermoacidophilic archaea
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Archaeal diversity and community structure in a Swedish barley field: Specificity of the EK510R/(EURY498) 16S rDNA primer
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Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils
inferredcites →https://doi.org/10.1016/s0038-0717(03)00147-0openalex-snapshot
Effects of freeze–thaw stress during soil storage on microbial communities and methidathion degradation
inferredcites →https://doi.org/10.1016/s0065-2164(07)62003-6openalex-snapshot
The Distribution and Diversity of Euryarchaeota in Termite Guts
inferredcites →https://doi.org/10.1016/s0378-1097(03)00055-7openalex-snapshot
Methanogenic population structure in a variety of anaerobic bioreactors
inferredcites →https://doi.org/10.1016/s0378-1097(99)00070-1openalex-snapshot
Detection by polmerase chain reaction-amplification and sequencing of an archaeon in a commercial-scale copper bioleaching plant
inferredcites →https://doi.org/10.1038/27963openalex-snapshot
Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
inferredcites →https://doi.org/10.1038/37052openalex-snapshot
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
inferredcites →https://doi.org/10.1038/ismej.2007.53openalex-snapshot
Pyrosequencing enumerates and contrasts soil microbial diversity
inferredcites →https://doi.org/10.1038/ismej.2007.60openalex-snapshot
Effects of cattle husbandry on abundance and activity of methanogenic archaea in upland soils
inferredcites →https://doi.org/10.1038/ismej.2008.127openalex-snapshot
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
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Examining the global distribution of dominant archaeal populations in soil
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Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments
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Soil bacterial and fungal communities across a pH gradient in an arable soil
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Reproducibility and quantitation of amplicon sequencing-based detection
inferredcites →https://doi.org/10.1038/ismej.2011.141openalex-snapshot
Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions
inferredcites →https://doi.org/10.1038/ismej.2011.168openalex-snapshot
Ammonia-oxidizing archaea have more important role than ammonia-oxidizing bacteria in ammonia oxidation of strongly acidic soils
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Genomic studies of uncultivated archaea
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Archaeal diversity associated with in situ samplers deployed on hydrothermal vents on the East Pacific Rise (13°N)
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Archaea in coastal marine environments.
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UCHIME improves sensitivity and speed of chimera detection
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The Natural History of Nitrogen Fixation
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SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
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Nitrate reduction and the nitrogen cycle in archaea
inferredcites →https://doi.org/10.1101/gr.223902openalex-snapshot
The Genome of M. acetivorans Reveals Extensive Metabolic and Physiological Diversity
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Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota
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It's all relative: ranking the diversity of aquatic bacterial communities
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02666.xopenalex-snapshot
amoA ‐based consensus phylogeny of ammonia‐oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions
inferredcites →https://doi.org/10.1111/j.1574-6941.2002.tb00998.xopenalex-snapshot
Identification of novel Crenarchaeota and Euryarchaeota clusters associated with different depth layers of a forest soil
inferredcites →https://doi.org/10.1111/j.1574-6941.2007.00310.xopenalex-snapshot
High abundance of Crenarchaeota in a temperate acidic forest soil
inferredcites →https://doi.org/10.1111/j.1574-6941.2011.01280.xopenalex-snapshot
Distribution and diversity of archaeal communities in selected Chinese soils
inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01456.xopenalex-snapshot
Effect of ammonium and acetate on methanogenic pathway and methanogenic community composition
inferredcites →https://doi.org/10.1111/j.1574-6976.2000.tb00563.xopenalex-snapshot
Microbiology of flooded rice paddies
inferredcites →https://doi.org/10.1126/science.1072502openalex-snapshot
Microbial Reefs in the Black Sea Fueled by Anaerobic Oxidation of Methane
inferredcites →https://doi.org/10.1126/science.287.5459.1796openalex-snapshot
An Archaeal Iron-Oxidizing Extreme Acidophile Important in Acid Mine Drainage
inferredcites →https://doi.org/10.1128/aem.00335-09openalex-snapshot
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/jb.01016-10openalex-snapshot
Genome Copy Numbers and Gene Conversion in Methanogenic Archaea
inferredcites →https://doi.org/10.1186/1471-2180-1-5openalex-snapshot
Phylogenetic analysis of methanogens from the bovine rumen
inferredcites →https://doi.org/10.1196/annals.1419.019openalex-snapshot
Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea
inferredcites →https://doi.org/10.1371/journal.pone.0000092openalex-snapshot
Regulated Polyploidy in Halophilic Archaea
inferredcites →https://doi.org/10.1371/journal.pone.0015897openalex-snapshot
Response of Archaeal Communities in the Rhizosphere of Maize and Soybean to Elevated Atmospheric CO2 Concentrations
inferredcites →https://doi.org/10.1371/journal.pone.0020453openalex-snapshot
Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of Oxygen
inferredcites →https://doi.org/10.2136/sssaj1984.03615995004800060013xopenalex-snapshot
Effect of Water‐Filled Pore Space on Carbon Dioxide and Nitrous Oxide Production in Tilled and Nontilled Soils
inferredcites →https://doi.org/10.2136/sssaj2001.653849xopenalex-snapshot
Simplified Method for Soil Particle‐Size Determination to Accompany Soil‐Quality Analyses

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Microbiota associated with the methane cycle in primary, secondary forest, and pasture in the Eastern Amazon
inferred← citeshttps://doi.org/10.11606/t.11.2015.tde-10042015-111904openalex-snapshot
Diversidade de bactérias e arquéias em solos cultivados com cana-de-açúcar: um enfoque biogeográfico
inferred← citeshttps://doi.org/10.11606/t.18.2020.tde-21062021-152619openalex-snapshot
Efeitos de impermeabilização superficial na mobilização de contaminantes e na comunidade microbiana em depósito de resíduos sólidos urbanos desativado
inferred← citeshttps://doi.org/10.11606/t.64.2021.tde-19112021-110931openalex-snapshot
Efeitos da conversão pastagem-canavial e da intensificação do sistema de pastagem na microbiota do solo associada ao ciclo do nitrogênio
inferred← citeshttps://doi.org/10.1186/s12866-020-01913-5openalex-snapshot
Deciphering the archaeal communities in tree rhizosphere of the Qinghai-Tibetan plateau
inferred← citeshttps://doi.org/10.1186/s12866-021-02095-4openalex-snapshot
Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.1186/s40064-016-2410-3openalex-snapshot
Utilization of vinasses as soil amendment: consequences and perspectives
inferred← citeshttps://doi.org/10.1186/s40168-019-0630-9openalex-snapshot
Environmental filtering drives distinct continental atlases of soil archaea between dryland and wetland agricultural ecosystems
inferred← citeshttps://doi.org/10.1186/s40168-020-00978-8openalex-snapshot
Coexistence patterns of soil methanogens are closely tied to methane generation and community assembly in rice paddies
inferred← citeshttps://doi.org/10.1186/s40793-025-00678-6openalex-snapshot
Soil organic matter composition affects ecosystem multifunctionality by mediating the composition of microbial communities in long-term restored meadows
inferred← citeshttps://doi.org/10.13057/biodiv/d240912openalex-snapshot
Microbial diversity in pesticidal and non-pesticidal paddy soil microbiomes
inferred← citeshttps://doi.org/10.1371/journal.pone.0106355openalex-snapshot
Prokaryotic Diversity in the Rhizosphere of Organic, Intensive, and Transitional Coffee Farms in Brazil
inferred← citeshttps://doi.org/10.15666/aeer/2006_48954912openalex-snapshot
EFFECTS OF PLANTING XANTHOCERAS SORBIFOLIUM BUNGE ON HEAVY METAL ELEMENTS AND RHIZOSPHERE ARCHAEA DIVERSITY OF FLY ASH
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2207277/v1openalex-snapshot
Effects of capping on microbial populations and contaminants immobilization in an old unlined landfill
inferred← citeshttps://doi.org/10.25148/etd.fidc001222openalex-snapshot
Microbial Functional Diversity and the Associated Biogeochemical Interactions Across Miami-Dade County, Florida Soils
inferred← citeshttps://doi.org/10.3389/fmicb.2015.00938openalex-snapshot
The large-scale distribution of ammonia oxidizers in paddy soils is driven by soil pH, geographic distance, and climatic factors
inferred← citeshttps://doi.org/10.3389/fmicb.2016.01447openalex-snapshot
Geographical Distribution of Methanogenic Archaea in Nine Representative Paddy Soils in China
inferred← citeshttps://doi.org/10.3389/fmicb.2017.00945openalex-snapshot
Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers
inferred← citeshttps://doi.org/10.3389/fmicb.2017.01200openalex-snapshot
Thermoplasmatales and Methanogens: Potential Association with the Crenarchaeol Production in Chinese Soils
inferred← citeshttps://doi.org/10.3389/fmicb.2019.00023openalex-snapshot
Biogeographic Distribution Patterns of the Archaeal Communities Across the Black Soil Zone of Northeast China
inferred← citeshttps://doi.org/10.3389/fmicb.2019.01752openalex-snapshot
Microbial Community Structures and Important Associations Between Soil Nutrients and the Responses of Specific Taxa to Rice-Frog Cultivation
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02285openalex-snapshot
Anthropogenic Pollution Intervenes the Recovery Processes of Soil Archaeal Community Composition and Diversity From Flooding
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1007237openalex-snapshot
Reshaping of soil carbon and nitrogen contents in quincentenary ancient rice terraces: The role of both short-term abandonment and prokaryotic functional groups
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1020175openalex-snapshot
Diversity and functional traits of indigenous soil microbial flora associated with salinity and heavy metal concentrations in agricultural fields within the Indus Basin region, Pakistan
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1616051openalex-snapshot
Coexistence networks of soil methanogens are closely tied to methane generation in wetlands on the northeastern of the Qinghai–Tibet Plateau
inferred← citeshttps://doi.org/10.3390/agronomy11020383openalex-snapshot
Micronutrients and Soil Microorganisms in the Suppression of Potato Common Scab
inferred← citeshttps://doi.org/10.3390/f10070550openalex-snapshot
Soil Depth Determines the Composition and Diversity of Bacterial and Archaeal Communities in a Poplar Plantation
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037764openalex-snapshot
Additional file 10 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037767openalex-snapshot
Additional file 11 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037770openalex-snapshot
Additional file 1 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037773openalex-snapshot
Additional file 2 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037776openalex-snapshot
Additional file 3 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037779openalex-snapshot
Additional file 4 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037782openalex-snapshot
Additional file 5 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037785openalex-snapshot
Additional file 6 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037788openalex-snapshot
Additional file 7 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037791openalex-snapshot
Additional file 8 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.6084/m9.figshare.14037794openalex-snapshot
Additional file 9 of Rubidium chloride modulated the fecal microbiota community in mice
inferred← citeshttps://doi.org/10.70675/6bb87acez122bz48ebza8c7zd74e2330330dopenalex-snapshot
Étude du pangénome d’une population bactérienne structurée : vers une nouvelle compréhension de l’origine des variations intra-génomiques
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