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Community structure of Archaea and Bacteria in a profundal lake sediment Lake Kinneret (Israel)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Bacterial phylogeny based on comparative sequence analysis (review)
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Methanogenic Pathway and Archaeal Community Structure in the Sediment of Eutrophic Lake Dagow: Effect of Temperature
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Acetate threshold values and acetate activating enzymes in methanogenic bacteria
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Molecular profiling of 16S rRNA genes reveals diet-related differences of microbial communities in soil, gut, and casts of Lumbricus terrestris L. (Oligochaeta: Lumbricidae)
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Critical factors influencing the recovery and integrity of rRNA extracted from environmental samples: use of an optimized protocol to measure depth-related biomass distribution in freshwater sediments
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The ecology of Cytophaga–Flavobacteria in aquatic environments
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Vertical distributions of sulfate-reducing bacteria and methane-producing archaea quantified by oligonucleotide probe hybridization in the profundal sediment of a mesotrophic lake
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Characterization of depth-related microbial community structure in lake sediment by denaturing gradient gel electrophoresis of amplified 16S rDNA and reversely transcribed 16S rRNA fragments
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Microbial diversity and functional characterization of sediments from reservoirs of different trophic state
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Seasonal changes in ribosomal RNA of sulfate-reducing bacteria and sulfate reducing activity in a freshwater lake sediment
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Pure Culture of Syntrophus buswellii, Definition of its Phylogenetic Status, and Description of Syntrophus gentianae sp. nov.
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The Response of the Microbial Community of Marine Sediments to Organic Carbon Input under Anaerobic Conditions
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Effects of Historical Lake Level and Land Use on Sediment and Phosphorus Accumulation Rates in Lake Kinneret
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Evidence for anaerobic syntrophic acetate oxidation during methane production in the profundal sediment of subtropical Lake Kinneret (Israel)
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Enhanced sensitivity of DNA‐ and rRNA‐based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients
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Energetics of methanogenic benzoate degradation by Syntrophus gentianae in syntrophic coculture
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Sulphate reduction in the hypolimnion and sediments of Lake Kinneret, Israel
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Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
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Using ecological diversity measures with bacterial communities
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Detection and in situ identification of representatives of a widely distributed new bacterial phylum
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Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
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Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: molecular and cultivation studies
inferredcites →https://doi.org/10.1126/science.276.5318.1568openalex-snapshot
Isolation of a Bacterium That Reductively Dechlorinates Tetrachloroethene to Ethene
inferredcites →https://doi.org/10.1127/archiv-hydrobiol/120/1991/267openalex-snapshot
Dinoflagellate associations in a subtropical lake (Lake Kinneret, Israel)
inferredcites →https://doi.org/10.1127/archiv-hydrobiol/149/2000/459openalex-snapshot
Diversity of the domain Archaea as determined by 16S rRNA gene analysis in the sediments of Lake Soyang
inferredcites →https://doi.org/10.1128/aem.45.1.187-192.1983openalex-snapshot
Sulfate Reducers Can Outcompete Methanogens at Freshwater Sulfate Concentrations
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Diversity and Structure of the Methanogenic Community in Anoxic Rice Paddy Soil Microcosms as Examined by Cultivation and Direct 16S rRNA Gene Sequence Retrieval
inferredcites →https://doi.org/10.1128/aem.65.6.2402-2408.1999openalex-snapshot
Vertical Distribution of Methanogens in the Anoxic Sediment of Rotsee (Switzerland)
inferredcites →https://doi.org/10.1128/aem.66.11.4605-4614.2000openalex-snapshot
Quantitative Analysis of Small-Subunit rRNA Genes in Mixed Microbial Populations via 5′-Nuclease Assays
inferredcites →https://doi.org/10.1128/aem.66.4.1328-1333.2000openalex-snapshot
rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria
inferredcites →https://doi.org/10.1128/aem.67.1.190-197.2001openalex-snapshot
Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities
inferredcites →https://doi.org/10.1128/aem.67.10.4399-4406.2001openalex-snapshot
Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity
inferredcites →https://doi.org/10.1128/aem.67.5.2354-2359.2001openalex-snapshot
DNA Extraction from Soils: Old Bias for New Microbial Diversity Analysis Methods
inferredcites →https://doi.org/10.1128/aem.68.5.2484-2494.2002openalex-snapshot
Effects of Amendment with Ferrihydrite and Gypsum on the Structure and Activity of Methanogenic Populations in Rice Field Soil
inferredcites →https://doi.org/10.1128/aem.69.1.320-326.2003openalex-snapshot
Evaluation of PCR Amplification Bias by Terminal Restriction Fragment Length Polymorphism Analysis of Small-Subunit rRNA and mcrA Genes by Using Defined Template Mixtures of Methanogenic Pure Cultures and Soil DNA Extracts
inferredcites →https://doi.org/10.1128/aem.69.12.7224-7235.2003openalex-snapshot
Microbial Communities Associated with GeologicalHorizons in Coastal Subseafloor Sediments from the Sea ofOkhotsk
inferredcites →https://doi.org/10.1128/aem.69.5.2555-2562.2003openalex-snapshot
Formation of Pseudo-Terminal Restriction Fragments, a PCR-Related Bias Affecting Terminal Restriction Fragment Length Polymorphism Analysis of Microbial Community Structure
inferredcites →https://doi.org/10.1128/aem.70.10.5778-5786.2004openalex-snapshot
Stable-Isotope Probing of Microorganisms Thriving at Thermodynamic Limits: Syntrophic Propionate Oxidation in Flooded Soil
inferredcites →https://doi.org/10.1128/aem.70.8.4930-4940.2004openalex-snapshot
Dominant Microbial Composition and Its Vertical Distribution in Saline Meromictic Lake Kaiike (Japan) as Revealed by Quantitative Oligonucleotide Probe Membrane Hybridization
inferredcites →https://doi.org/10.1128/aem.71.3.1671-1673.2005openalex-snapshot
Application of a Newly Developed ARB Software-Integrated Tool for In Silico Terminal Restriction Fragment Length Polymorphism Analysis Reveals the Dominance of a Novel pmoA Cluster in a Forest Soil
inferredcites →https://doi.org/10.1128/aem.71.4.2162-2169.2005openalex-snapshot
Comparative Analysis of Bacterial Diversity in Freshwater Sediment of a Shallow Eutrophic Lake by Molecular and Improved Cultivation-Based Techniques
inferredcites →https://doi.org/10.1128/jb.173.2.697-703.1991openalex-snapshot
16S ribosomal DNA amplification for phylogenetic study
inferredcites →https://doi.org/10.1128/jb.180.18.4765-4774.1998openalex-snapshot
Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
inferredcites →https://doi.org/10.1128/mr.59.1.143-169.1995openalex-snapshot
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
inferredcites →https://doi.org/10.1186/gb-2002-3-2-reviews0003openalex-snapshot
Exploring prokaryotic diversity in the genomic era.
inferredcites →https://doi.org/10.1385/mb:15:2:115openalex-snapshot
Basic Principles of Quantitative PCR
inferredcites →https://doi.org/10.3354/ame034043openalex-snapshot
Planktonic community production and respiration and the impact of bacteria on carbon cycling in the photic zone of Lake Kinneret
inferredcites →https://doi.org/10.4319/lo.1971.16.3.0510openalex-snapshot
LAKE KINNERET: THE NUTRIENT CHEMISTRY OF THE SEDIMENTS1
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Methane cycling in a eutrophic shield lake and its effects on whole lake metabolism 1
inferredcites →https://doi.org/10.4319/lo.1996.41.4.0636openalex-snapshot
Pelagic‐benthic coupling: Profundal benthic community response to spring diatom deposition in mesotrophic Lake Erken

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Acoustical methodology for determination of gas content in aquatic sediments, with application to Lake Kinneret, Israel, as a case study
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Salinity drives archaeal distribution patterns in high altitude lake sediments on the Tibetan Plateau
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inferred← citeshttps://doi.org/10.1111/1462-2920.13491openalex-snapshot
Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types
inferred← citeshttps://doi.org/10.1111/1462-2920.13703openalex-snapshot
High‐resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils
inferred← citeshttps://doi.org/10.1111/1755-0998.13395openalex-snapshot
A step towards the validation of bacteria biotic indices using DNA metabarcoding for benthic monitoring
inferred← citeshttps://doi.org/10.1111/j.1365-2672.2008.04069.xopenalex-snapshot
Bacterial and archaeal assemblages in sediments of a large shallow freshwater lake, Lake Taihu, as revealed by denaturing gradient gel electrophoresis
inferred← citeshttps://doi.org/10.1111/j.1365-2672.2009.04369.xopenalex-snapshot
Comparison of DNA- and RNA-based bacterial community structures in soil exposed to 2,4-dichlorophenol
inferred← citeshttps://doi.org/10.1111/j.1462-2920.2006.01133.xopenalex-snapshot
Identification of acetate‐utilizing Bacteria and Archaea in methanogenic profundal sediments of Lake Kinneret (Israel) by stable isotope probing of rRNA
inferred← citeshttps://doi.org/10.1111/j.1462-2920.2010.02324.xopenalex-snapshot
A comparative molecular analysis of water‐filled limestone sinkholes in north‐eastern Mexico
inferred← citeshttps://doi.org/10.1111/j.1574-6941.2008.00498.xopenalex-snapshot
Are Archaea inherently less diverse than Bacteria in the same environments?
inferred← citeshttps://doi.org/10.1111/j.1574-6941.2009.00752.xopenalex-snapshot
Influence of intercropping and intercropping plus rhizobial inoculation on microbial activity and community composition in rhizosphere of alfalfa (Medicago sativaL.) and Siberian wild rye (Elymus sibiricusL.)
inferred← citeshttps://doi.org/10.1111/j.1574-6941.2009.00761.xopenalex-snapshot
The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu
inferred← citeshttps://doi.org/10.1111/j.1574-6941.2011.01134.xopenalex-snapshot
Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake
inferred← citeshttps://doi.org/10.1111/j.1749-7345.2012.00554.xopenalex-snapshot
Anaerobic Treatment of Brackishwater Aquaculture Sludge: An Alternative to Waste Stabilization Ponds
inferred← citeshttps://doi.org/10.1128/aem.02137-07openalex-snapshot
Subfossil 16S rRNA Gene Sequences of Green Sulfur Bacteria in the Black Sea and Their Implications for Past Photic Zone Anoxia
inferred← citeshttps://doi.org/10.1128/aem.02475-10openalex-snapshot
Ecophysiology of Uncultured Filamentous Anaerobes Belonging to the Phylum KSB3 That Cause Bulking in Methanogenic Granular Sludge
inferred← citeshttps://doi.org/10.11606/t.87.2010.tde-13082010-162741openalex-snapshot
Diversidade molecular de arqueias em sedimentos de rios da Amazônia e caracterização de espécies metanogênicas cultivadas.
inferred← citeshttps://doi.org/10.1186/s40168-017-0255-9openalex-snapshot
Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment
inferred← citeshttps://doi.org/10.1196/annals.1419.005openalex-snapshot
Physiology, Ecology, Phylogeny, and Genomics of Microorganisms Capable of Syntrophic Metabolism
inferred← citeshttps://doi.org/10.1201/9781439811382-c21openalex-snapshot
Archaeal Diversity Analysis Using 16S rDNA T-RFLP (Terminal-Restriction Fragment Length Polymorphisms)
inferred← citeshttps://doi.org/10.1248/bpb.b13-00118openalex-snapshot
Microchip-Based Terminal Restriction Fragment Length Polymorphism for On-Site Analysis of Bacterial Communities in Freshwater
inferred← citeshttps://doi.org/10.1248/bpb.b15-00573openalex-snapshot
Abundance and Community Structure of Bacteria on Asian Dust Particles Collected in Beijing, China, during the Asian Dust Season
inferred← citeshttps://doi.org/10.1264/jsme2.me14064openalex-snapshot
Linking Temporal Changes in Bacterial Community Structures with the Detection and Phylogenetic Analysis of Neutral Metalloprotease Genes in the Sediments of a Hypereutrophic Lake
inferred← citeshttps://doi.org/10.1371/journal.pone.0037796openalex-snapshot
Bacterial Communities in the Sediments of Dianchi Lake, a Partitioned Eutrophic Waterbody in China
inferred← citeshttps://doi.org/10.1371/journal.pone.0043346openalex-snapshot
Stratification of Archaea in the Deep Sediments of a Freshwater Meromictic Lake: Vertical Shift from Methanogenic to Uncultured Archaeal Lineages
inferred← citeshttps://doi.org/10.1371/journal.pone.0066968openalex-snapshot
Temporal and Spatial Diversity of Bacterial Communities in Coastal Waters of the South China Sea
inferred← citeshttps://doi.org/10.1371/journal.pone.0080804openalex-snapshot
Identification of Methanogenic archaea in the Hyporheic Sediment of Sitka Stream
inferred← citeshttps://doi.org/10.1371/journal.pone.0145558openalex-snapshot
Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes
inferred← citeshttps://doi.org/10.1371/journal.pone.0177488openalex-snapshot
Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA)
inferred← citeshttps://doi.org/10.1371/journal.pone.0253233openalex-snapshot
Spatial-temporal dynamics and influencing factors of archaeal communities in the sediments of Lancang River cascade reservoirs (LRCR), China
inferred← citeshttps://doi.org/10.14279/depositonce-3143openalex-snapshot
Characterization of methanogenic Archaea communities in biogas reactors by quantitative PCR
inferred← citeshttps://doi.org/10.1590/s1517-83822014000400006openalex-snapshot
Bacterial diversity in relatively pristine and anthropogenically-influenced mangrove ecosystems (Goa, India)
inferred← citeshttps://doi.org/10.1590/s1517-83822014000400009openalex-snapshot
Large scale distribution of bacterial communities in the upper Paraná River floodplain
inferred← citeshttps://doi.org/10.1641/b580205openalex-snapshot
Progress in the Ecological Genetics and Biodiversity of Freshwater Bacteria
inferred← citeshttps://doi.org/10.18307/2020.0612openalex-snapshot
Effects of continuous cyanobacterial salvaging on greenhouse gas flux on water-air interface in autumn
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1042496/v1openalex-snapshot
Temporal and Spatial Characterization of Sediment Bacterial Communities From Lake Wetlands in a Plain River Network Region
inferred← citeshttps://doi.org/10.2175/193864710798255898openalex-snapshot
A Study of a Combined Anaerobic/Aerobic System: Enhanced Nitrogen Removal by Alternating Aeration Modes in the Aerobic Digestion System
inferred← citeshttps://doi.org/10.2965/jswe.36.77openalex-snapshot
Identification of Glucose- and Acetate-Assimilating Bacteria in Activated Sludge by DNA Stable Isotope Probing
inferred← citeshttps://doi.org/10.3354/ame01549openalex-snapshot
Sediment bacteria and archaea community analysis and nutrient fluxes in a sub-tropical polymictic reservoir
inferred← citeshttps://doi.org/10.3389/fenvs.2022.1023835openalex-snapshot
Characteristics of denitrification and anammox in the sediment of an aquaculture pond
inferred← citeshttps://doi.org/10.3389/fmicb.2015.00253openalex-snapshot
Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania
inferred← citeshttps://doi.org/10.3389/fmicb.2016.00451openalex-snapshot
Temporal and Spatial Dynamics of Archaeal Communities in Two Freshwater Lakes at Different Trophic Status
inferred← citeshttps://doi.org/10.3389/fmicb.2018.01852openalex-snapshot
Environmental Concentrations of Copper, Alone or in Mixture With Arsenic, Can Impact River Sediment Microbial Community Structure and Functions
inferred← citeshttps://doi.org/10.3389/fmicb.2019.00247openalex-snapshot
The Active Sulfate-Reducing Microbial Community in Littoral Sediment of Oligotrophic Lake Constance
inferred← citeshttps://doi.org/10.3390/separations10100535openalex-snapshot
Temporal and Spatial Characterization of Sediment Bacterial Communities from Lake Wetlands in a Plain River Network Region
inferred← citeshttps://doi.org/10.3390/w10040485openalex-snapshot
Prokaryotic Community Composition Affected by Seasonal Changes in Physicochemical Properties of Water in Peat Bog Lakes
inferred← citeshttps://doi.org/10.3967/0895-3988.2011.02.008openalex-snapshot
Comparison of bacterioplankton communities in three heavily polluted streams in China.
inferred← citeshttps://doi.org/10.4236/aim.2016.612083openalex-snapshot
Phylogenetic Analysis of Anaerobic Co-Digestion of Animal Manure and Corn Stover Reveals Linkages between Bacterial Communities and Digestion Performance
inferred← citeshttps://doi.org/10.4236/oje.2018.810033openalex-snapshot
Ancient European Lakes: Reservoirs of Hidden Microbial Diversity? The Case of Lake Pamvotis (NW Greece)
inferred← citeshttps://doi.org/10.4236/oje.2020.109039openalex-snapshot
Diversity and Structure of the Prokaryotic Communities Indigenous to Two Volcanic Lakes: Nyos and Monoun in Cameroon
inferred← citeshttps://doi.org/10.4319/lo.2008.53.1.0113openalex-snapshot
Response of the methanogenic microbial community of a profundal lake sediment (Lake Kinneret, Israel) to algal deposition
inferred← citeshttps://doi.org/10.4319/lo.2011.56.4.1525openalex-snapshot
Quantifying rates of methanogenesis and methanotrophy in Lake Kinneret sediments (Israel) using pore‐water profiles
inferred← citeshttps://doi.org/10.4319/lo.2011.56.4.1536openalex-snapshot
Geochemical evidence for iron‐mediated anaerobic oxidation of methane
inferred← citeshttps://doi.org/10.4491/ksee.2015.37.6.332openalex-snapshot
Variation of Nitrogen Removal Efficiency and Microbial Communities Depending on Operating Conditions of a CANON Process
inferred← citeshttps://doi.org/10.5194/bg-12-2847-2015openalex-snapshot
Methane-related changes in prokaryotes along geochemical profiles in sediments of Lake Kinneret (Israel)
inferred← citeshttps://doi.org/10.5194/bg-13-2475-2016openalex-snapshot
Recording of climate and diagenesis through sedimentary DNA and fossil pigments at Laguna Potrok Aike, Argentina
inferred← citeshttps://doi.org/10.5194/bg-16-3725-2019openalex-snapshot
Effects of eutrophication on sedimentary organic carbon cycling in five temperate lakes
inferred← citeshttps://doi.org/10.5194/bg-18-2091-2021openalex-snapshot
Metagenomic insights into the metabolism of microbial communities that mediate iron and methane cycling in Lake Kinneret iron-rich methanic sediments
inferred← citeshttps://doi.org/10.5194/bg-8-795-2011openalex-snapshot
Stable carbon isotope discrimination and microbiology of methane formation in tropical anoxic lake sediments
inferred← citeshttps://doi.org/10.5713/ajas.2011.11341openalex-snapshot
Spatial Heterogeneity of Bacteria: Evidence from Hot Composts by Culture-independent Analysis
inferred← citeshttps://doi.org/10.5897/ajmr11.631openalex-snapshot
Effects of lake water chemistry on bacterioplankton community structures of three lakes
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