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Ancient horizontal gene transfer can benefit phylogenetic reconstruction

https://doi.org/10.1016/j.tig.2006.05.004

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Gene duplications and horizontal gene transfer during early evolution

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Lateral gene transfer in eukaryotes

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The Phylogenetic Position of Red Algae Revealed by Multiple Nuclear Genes from Mitochondria-Containing Eukaryotes and an Alternative Hypothesis on the Origin of Plastids

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Are Red Algae Plants? A Critical Evaluation of Three Key Molecular Data Sets

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Horizontal transfer of ATPase genes — the tree of life becomes a net of life

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Origin and ,evolution of organelle genomes

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Evolution by acquisition: the case for horizontal gene transfers

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Evolution: Red Algal Genome Affirms a Common Origin of All Plastids

inferredcites →https://doi.org/10.1016/j.cub.2005.06.040openalex-snapshot

Monophyly of Primary Photosynthetic Eukaryotes: Green Plants, Red Algae, and Glaucophytes

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A first glimpse into the pattern and scale of gene transfer in the Apicomplexa

inferredcites →https://doi.org/10.1016/j.mib.2003.09.008openalex-snapshot

Horizontal gene transfer and phylogenetics

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“Big it up”: endoreduplication and cell-size control in plants

inferredcites →https://doi.org/10.1016/j.pbi.2005.01.001openalex-snapshot

Polyploidy and genome evolution in plants

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Genome mosaicism and organismal lineages

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Comparative genomics of nematodes

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Phylogenetic reconstruction and lateral gene transfer

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You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes

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Rare genomic changes as a tool for phylogenetics

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Insights into the evolutionary process of genome degradation

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The Closest Unicellular Relatives of Animals

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DNA Topoisomerase VI Is Essential for Endoreduplication in Arabidopsis

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An Archaebacterial Topoisomerase Homolog Not Present in Other Eukaryotes Is Indispensable for Cell Proliferation of Plants

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Phylogenetic Analyses of Diplomonad Genes Reveal Frequent Lateral Gene Transfers Affecting Eukaryotes

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Emerging Genomic and Proteomic Evidence on Relationships Among the Animal, Plant and Fungal Kingdoms

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psbA genes indicate common ancestry of prochlorophytes and chloroplasts

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Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution

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The origin of red algae and the evolution of chloroplasts

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Lateral gene transfer and the nature of bacterial innovation

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The genome of the protist parasite Entamoeba histolytica

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Horizontal gene transfer, genome innovation and evolution

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Genomic islands in pathogenic and environmental microorganisms

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Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans

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Evolutionary analysis of Arabidopsis , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus

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Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins.

inferredcites →https://doi.org/10.1073/pnas.96.7.3801openalex-snapshot

Horizontal gene transfer among genomes: The complexity hypothesis

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The Tangled Web: Gene Genealogies and the Origin of Eukaryotes

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A Genome Phylogeny for Mitochondria Among -Proteobacteria and a Predominantly Eubacterial Ancestry of Yeast Nuclear Genes

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Gene Transfers from Nanoarchaeota to an Ancestor of Diplomonads and Parabasalids

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The Opisthokonta and the Ecdysozoa May Not Be Clades: Stronger Support for the Grouping of Plant and Animal than for Animal and Fungi and Stronger Support for the Coelomata than Ecdysozoa

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The Presence of a Haloarchaeal Type Tyrosyl-tRNA Synthetase Marks the Opisthokonts as Monophyletic

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A phylogenomic approach to microbial evolution

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PhyloGenie: automated phylome generation and analysis

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Prokaryotic Evolution in Light of Gene Transfer

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Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

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The net of life: Reconstructing the microbial phylogenetic network

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Evolution of Aminoacyl-tRNA Synthetases—Analysis of Unique Domain Architectures and Phylogenetic Trees Reveals a Complex History of Horizontal Gene Transfer Events

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Phylogenetic Classification and the Universal Tree

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Monophyletic Origins of the Metazoa: an Evolutionary Link with Fungi

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Aminoacyl-tRNA Synthetases, the Genetic Code, and the Evolutionary Process

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Building a Multicellular Organism

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Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum

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Horizontal Gene Transfer: Pitfalls and Promises

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Variation and Evolution in Plants

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Horizontal Gene Transfer in Evolution

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Horizontal Gene Transfer in Evolution

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Completed Genomes: Bacteria and Archaea

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Biased Gene Transfer Contributes to Maintaining the Tree of Life

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Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model

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