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Engineering Microbiomes to Improve Plant and Animal Health

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The Diversity and Evolution of Rhizobia
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The Impact of Beneficial Plant-Associated Microbes on Plant Phenotypic Plasticity
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Altering the Intestinal Microbiota during a Critical Developmental Window Has Lasting Metabolic Consequences
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Mapping the Inner Workings of the Microbiome: Genomic- and Metagenomic-Based Study of Metabolism and Metabolic Interactions in the Human Microbiome
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Mechanisms of symbiont-conferred protection against natural enemies: an ecological and evolutionary framework
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Genomics of the honey bee microbiome
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The dynamic microbiome
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Symbiont recruitment versus ant-symbiont co-evolution in the attine ant–microbe symbiosis
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Metagenomics meets time series analysis: unraveling microbial community dynamics
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Beneficial rhizobacteria from rice rhizosphere confers high protection against biotic and abiotic stress inducing systemic resistance in rice seedlings
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Contributions of Intestinal Bacteria to Nutrition and Metabolism in the Critically Ill
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Phylogeny, culturing, and metagenomics of the human gut microbiota
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New paradigms for the evolution of beneficial infections
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Rethinking heredity, again
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Sexual transmission of beneficial microbes
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Symbiont genomics, our new tangled bank
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Experimental evolution
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Experimental factors affecting PCR-based estimates of microbial species richness and evenness
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Selection on soil microbiomes reveals reproducible impacts on plant function
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Host sanctions and the legume–rhizobium mutualism
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Structure, function and diversity of the healthy human microbiome
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Defining the core Arabidopsis thaliana root microbiome
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A metagenome-wide association study of gut microbiota in type 2 diabetes
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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
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Enteric defensins are essential regulators of intestinal microbial ecology
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Single-cell sequencing
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Associations with rhizosphere bacteria can confer an adaptive advantage to plants
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Horizontal gene transfer of antibacterial genes
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Microbial contact during pregnancy, intestinal colonization and human disease
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The gut microbiota shapes intestinal immune responses during health and disease
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A complex journey: transmission of microbial symbionts
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Defensive symbioses of animals with prokaryotic and eukaryotic microorganisms
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Fecal Microbiota Transplantation — An Old Therapy Comes of Age
inferredcites →https://doi.org/10.1073/pnas.0610038104openalex-snapshot
Artificial selection of simulated microbial ecosystems
inferredcites →https://doi.org/10.1073/pnas.0808723105openalex-snapshot
Paneth cells directly sense gut commensals and maintain homeostasis at the intestinal host-microbial interface
inferredcites →https://doi.org/10.1073/pnas.0907722106openalex-snapshot
Nod2 is required for the regulation of commensal microbiota in the intestine
inferredcites →https://doi.org/10.1073/pnas.1100292108openalex-snapshot
Social evolution in multispecies biofilms
inferredcites →https://doi.org/10.1073/pnas.1100304108openalex-snapshot
Evolutionary transitions in bacterial symbiosis
inferredcites →https://doi.org/10.1073/pnas.1110474108openalex-snapshot
Socially transmitted gut microbiota protect bumble bees against an intestinal parasite
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Rapid responses of soil microorganisms improve plant fitness in novel environments
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Diversity and heritability of the maize rhizosphere microbiome under field conditions
inferredcites →https://doi.org/10.1073/pnas.1419136111openalex-snapshot
Rapid changes in the gut microbiome during human evolution
inferredcites →https://doi.org/10.1073/pnas.150237597openalex-snapshot
Artificial ecosystem selection
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Host Control of Symbiont Transmission: The Separation of Symbionts Into Germ and Soma
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The Evolution of Cooperation
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Let the Right One In: A Microeconomic Approach to Partner Choice in Mutualisms
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The Plant Microbiome at Work
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Human selection and the relaxation of legume defences against ineffective rhizobia
inferredcites →https://doi.org/10.1098/rspb.2014.2957openalex-snapshot
An out-of-body experience: the extracellular dimension for the transmission of mutualistic bacteria in insects
inferredcites →https://doi.org/10.1098/rstb.2013.0423openalex-snapshot
Joint phenotypes, evolutionary conflict and the fundamental theorem of natural selection
inferredcites →https://doi.org/10.1111/1751-7915.12047openalex-snapshot
Fame and future of faecal transplantations – developing next‐generation therapies with synthetic microbiomes
inferredcites →https://doi.org/10.1111/ele.12349openalex-snapshot
The cryptic role of biodiversity in the emergence of host–microbial mutualisms
inferredcites →https://doi.org/10.1111/evo.12292openalex-snapshot
EXPLAINING MUTUALISM VARIATION: A NEW EVOLUTIONARY PARADOX?
inferredcites →https://doi.org/10.1111/evo.12470openalex-snapshot
RUNAWAY COEVOLUTION: ADAPTATION TO HERITABLE AND NONHERITABLE ENVIRONMENTS
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb01177.xopenalex-snapshot
COMMUNITY HERITABILITY MEASURES THE EVOLUTIONARY CONSEQUENCES OF INDIRECT GENETIC EFFECTS ON COMMUNITY STRUCTURE
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A general model for the evolution of mutualisms
inferredcites →https://doi.org/10.1111/j.1420-9101.2010.02056.xopenalex-snapshot
Host control over infection and proliferation of a cheater symbiont
inferredcites →https://doi.org/10.1111/j.1461-0248.2012.01853.xopenalex-snapshot
How to assemble a beneficial microbiome in three easy steps
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00670.xopenalex-snapshot
GENES WITH SOCIAL EFFECTS ARE EXPECTED TO HARBOR MORE SEQUENCE VARIATION WITHIN AND BETWEEN SPECIES
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00123.xopenalex-snapshot
Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
inferredcites →https://doi.org/10.1111/mec.12571openalex-snapshot
Diffuse symbioses: roles of plant–plant, plant–microbe and microbe–microbe interactions in structuring the soil microbiome
inferredcites →https://doi.org/10.1111/nph.12383openalex-snapshot
The PGPR strain P hyllobacterium brassicacearum STM 196 induces a reproductive delay and physiological changes that result in improved drought tolerance in A rabidopsis
inferredcites →https://doi.org/10.1111/nph.13312openalex-snapshot
The importance of the microbiome of the plant holobiont
inferredcites →https://doi.org/10.1126/science.1072191openalex-snapshot
AGTR2 Mutations in X-Linked Mental Retardation
inferredcites →https://doi.org/10.1126/science.1078055openalex-snapshot
Thermotolerance Generated by Plant/Fungal Symbiosis
inferredcites →https://doi.org/10.1126/science.1208473openalex-snapshot
Reciprocal Rewards Stabilize Cooperation in the Mycorrhizal Symbiosis
inferredcites →https://doi.org/10.1126/science.1224203openalex-snapshot
The Application of Ecological Theory Toward an Understanding of the Human Microbiome
inferredcites →https://doi.org/10.1128/aem.01861-14openalex-snapshot
Routes of Acquisition of the Gut Microbiota of the Honey Bee Apis mellifera
inferredcites →https://doi.org/10.1128/genomea.01176-14openalex-snapshot
Genome Sequences of Lactobacillus sp. Strains wkB8 and wkB10, Members of the Firm-5 Clade, from Honey Bee Guts
inferredcites →https://doi.org/10.1128/jb.182.16.4578-4586.2000openalex-snapshot
Vibrio fischeri lux Genes Play an Important Role in Colonization and Development of the Host Light Organ
inferredcites →https://doi.org/10.1128/mbio.00036-12openalex-snapshot
The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
inferredcites →https://doi.org/10.1128/mbio.00099-12openalex-snapshot
The Origins of Cooperative Bacterial Communities
inferredcites →https://doi.org/10.1128/mbio.00231-11openalex-snapshot
Natural Competence Is a Major Mechanism for Horizontal DNA Transfer in the Oral Pathogen Porphyromonas gingivalis
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102710-145039openalex-snapshot
Microbially Mediated Plant Functional Traits
inferredcites →https://doi.org/10.1146/annurev-micro-091213-112901openalex-snapshot
The Tiniest Tiny Genomes
inferredcites →https://doi.org/10.1146/annurev-phyto-082712-102340openalex-snapshot
Induced Systemic Resistance by Beneficial Microbes
inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.102003.152626openalex-snapshot
The Evolution of Agriculture in Insects
inferredcites →https://doi.org/10.1186/gb-2013-14-6-209openalex-snapshot
The plant microbiome
inferredcites →https://doi.org/10.1371/journal.pbio.1001424openalex-snapshot
The Evolution of Mutualism in Gut Microbiota Via Host Epithelial Selection
inferredcites →https://doi.org/10.1371/journal.pbio.1001631openalex-snapshot
Mom Knows Best: The Universality of Maternal Microbial Transmission
inferredcites →https://doi.org/10.1371/journal.pgen.1004283openalex-snapshot
A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota
inferredcites →https://doi.org/10.1371/journal.pgen.1004596openalex-snapshot
Hidden Diversity in Honey Bee Gut Symbionts Detected by Single-Cell Genomics
inferredcites →https://doi.org/10.1371/journal.pone.0066019openalex-snapshot
Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents
inferredcites →https://doi.org/10.1525/bio.2011.61.5.9openalex-snapshot
Microbial Communities as Experimental Units
inferredcites →https://doi.org/10.18632/aging.100623openalex-snapshot
Functional metagenomic profiling of intestinal microbiome in extreme ageing
inferredcites →https://doi.org/10.1890/07-0337.1openalex-snapshot
PLANT–SOIL–MICROORGANISM INTERACTIONS: HERITABLE RELATIONSHIP BETWEEN PLANT GENOTYPE AND ASSOCIATED SOIL MICROORGANISMS
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Introduction to Quantitative Genetics.
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Introduction to Quantitative Genetics
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Bacteriophages: an underestimated role in human and animal health?
inferredcites →https://doi.org/10.3389/fmicb.2012.00417openalex-snapshot
Fundamentals of Microbial Community Resistance and Resilience
inferredcites →https://doi.org/10.3389/fmicb.2013.00355openalex-snapshot
Bespoke microbiome therapy to manage plant diseases
inferredcites →https://doi.org/10.3389/fmicb.2014.00046openalex-snapshot
Symbiote transmission and maintenance of extra-genomic associations
inferredcites →https://doi.org/10.3389/fmicb.2014.00283openalex-snapshot
Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance
inferredcites →https://doi.org/10.3389/fmicb.2014.00638openalex-snapshot
Think laterally: horizontal gene transfer from symbiotic microbes may extend the phenotype of marine sessile hosts
inferredcites →https://doi.org/10.4467/16890027ap.12.019.0765openalex-snapshot
Stimulation of Plant Growth through Interactions of Bacteria and Protozoa: Testing the Auxiliary Microbial Loop Hypothesis
inferredcites →https://doi.org/10.5860/choice.50-2063openalex-snapshot
Darwinian agriculture: how understanding evolution can improve agriculture
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MICROBIAL CONSORTIA ENGINEERING FOR CELLULAR FACTORIES: IN VITRO TO IN SILICO SYSTEMS

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Unraveling Microbial Shifts and Plant Growth Responses in Chrysanthemum 'Merlino' Due to Artificial Root Exudates in Horticultural Substrates
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Engineering Microbes to Improve Crop Health
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Biotechnology of Plant‐Associated Microbiomes
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Seed Microbiome and Its Implication in Plant Growth Promotion and Health
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Microbiome
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Microbial Consortia
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Interplay Between Root Structure and Function in Enhancing Efficiency of Nitrogen and Phosphorus Acquisition
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Agricultural Microbiomes
inferred← citeshttps://doi.org/10.1002/9781119799351.ch2openalex-snapshot
Engineering and Management of Agricultural Microbiomes for Improving Crop Health
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Microbiome, Epigenetics and Fish Health Interactions in Aquaculture
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Rhizosphere Improvement
inferred← citeshttps://doi.org/10.1002/9781119830795.ch5openalex-snapshot
Metagenomics and Microbiome Engineering
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Microbiome Engineering and Biotechnology
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Microbiome‐assisted Agriculture
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Artificial Microbial Arenas: Materials for Observing and Manipulating Microbial Consortia
inferred← citeshttps://doi.org/10.1002/ajb2.1404openalex-snapshot
Resilience to multiple stressors in an aquatic plant and its microbiome
inferred← citeshttps://doi.org/10.1002/biot.201600099openalex-snapshot
Microbiome engineering: Current applications and its future
inferred← citeshttps://doi.org/10.1002/biot.202100638openalex-snapshot
Arabidopsis plants engineered for high root sugar secretion enhance the diversity of soil microorganisms
inferred← citeshttps://doi.org/10.1002/ece3.11249openalex-snapshot
Nor climate nor human impact factors: Chytrid infection shapes the skin bacterial communities of an endemic amphibian in a biodiversity hotspot
inferred← citeshttps://doi.org/10.1002/ece3.2553openalex-snapshot
Microbial community responses to soil tillage and crop rotation in a corn/soybean agroecosystem
inferred← citeshttps://doi.org/10.1002/ece3.8564openalex-snapshot
Non‐invasive monitoring of multiple wildlife health factors by fecal microbiome analysis
inferred← citeshttps://doi.org/10.1002/ecm.1469openalex-snapshot
Energy landscape analysis elucidates the multistability of ecological communities across environmental gradients
inferred← citeshttps://doi.org/10.1002/ecm.70072openalex-snapshot
Microbial interactions as modular: Implications for ecosystem dynamics and evolution
inferred← citeshttps://doi.org/10.1002/fee.2001openalex-snapshot
Microbiome engineering: enhancing climate resilience in corals
inferred← citeshttps://doi.org/10.1002/imt2.3openalex-snapshot
Predicting microbiome compositions from species assemblages through deep learning
inferred← citeshttps://doi.org/10.1002/jsfa.7554openalex-snapshot
Planting seeds for the future of food
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Guided by the principles of microbiome engineering: Accomplishments and perspectives for environmental use
inferred← citeshttps://doi.org/10.1002/nzc2.70153openalex-snapshot
Mitigating Cerium Oxide Nanoparticle Stress in Oat Under Elevated CO 2 Using Micromonospora sp. Treatment
inferred← citeshttps://doi.org/10.1007/124_2022_60openalex-snapshot
Holobionts in the Plant Kingdom
inferred← citeshttps://doi.org/10.1007/978-1-0716-4180-4_49openalex-snapshot
In Situ Phytomicrobiome Engineering
inferred← citeshttps://doi.org/10.1007/978-1-0716-4180-4_58openalex-snapshot
Plant-Microbiome Engineering to Improve Stress Tolerance
inferred← citeshttps://doi.org/10.1007/978-3-030-16534-5_11openalex-snapshot
Sensing Soil Microbes and Interactions: How Can Nanomaterials Help?
inferred← citeshttps://doi.org/10.1007/978-3-030-19831-2_6openalex-snapshot
Soil–Microbes–Plants: Interactions and Ecological Diversity
inferred← citeshttps://doi.org/10.1007/978-3-030-44364-1_19openalex-snapshot
Role of Rhizomicrobiome in Maintaining Soil Fertility and Crop Production
inferred← citeshttps://doi.org/10.1007/978-3-030-44838-7_13openalex-snapshot
How Microbiome Approaches Can Assist Industrial Development of Biological Control Products
inferred← citeshttps://doi.org/10.1007/978-3-030-51849-3_21openalex-snapshot
Endosymbiont-Mediated Adaptive Responses to Stress in Holobionts
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Biological Control Based on Microbial Consortia – From Theory to Commercial Products
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inferred← citeshttps://doi.org/10.1007/978-3-030-87512-1_5openalex-snapshot
Plant Disease Management Through Microbiome Modulation
inferred← citeshttps://doi.org/10.1007/978-3-031-07434-9_8openalex-snapshot
Microbiome Applications for Sustainable Food Systems
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inferred← citeshttps://doi.org/10.1007/978-3-031-33370-5_17openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-3-319-59997-7_2openalex-snapshot
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Rhizospheric Microbiome Engineering as a Sustainable Tool in Agriculture: Approaches and Challenges
inferred← citeshttps://doi.org/10.1007/978-981-13-8487-5_12openalex-snapshot
Dynamics of Plant Microbiome and Its Effect on the Plant Traits
inferred← citeshttps://doi.org/10.1007/978-981-13-8495-0_2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-13-8495-0_3openalex-snapshot
Microbes: An Important Resource for Sustainable Agriculture
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Bioremediation of Soil Contaminated with Arsenic
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Applications of Microorganisms in Agriculture
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Role of Microbes for Attaining Enhanced Food Crop Production
inferred← citeshttps://doi.org/10.1007/978-981-15-3151-4_8openalex-snapshot
Wheat Microbiome: Present Status and Future Perspective
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Recent Advances in Plant-Microbe Interaction
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Molecular Mechanisms of Plant–Microbe Interactions in the Rhizosphere as Targets for Improving Plant Productivity
inferred← citeshttps://doi.org/10.1007/978-981-15-6125-2_15openalex-snapshot
Inoculation Effects in the Rhizosphere: Diversity and Function
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Rhizosphere Microbes for Sustainable Maintenance of Plant Health and Soil Fertility
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Symbiotic Interactions of Phototrophic Microbes: Engineering Synthetic Consortia for Biotechnology
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Applications of Microbes in Soil Health Maintenance for Agricultural Applications
inferred← citeshttps://doi.org/10.1007/978-981-16-3364-5_14openalex-snapshot
Methods of Assessments of Microbial Diversity and Their Functional Role in Soil Fertility and Crop Productivity
inferred← citeshttps://doi.org/10.1007/978-981-16-3364-5_9openalex-snapshot
Phytohormones as Fundamental Regulators of Plant–Microbe Associations Under Stress Conditions
inferred← citeshttps://doi.org/10.1007/978-981-16-4843-4_1openalex-snapshot
Nutrient Acquisition and Soil Fertility: Contribution of Rhizosphere Microbiomes in Sustainable Agriculture
inferred← citeshttps://doi.org/10.1007/978-981-16-7759-5_22openalex-snapshot
Functional Diversity of Microbes in Rhizosphere: A Key Player for Soil Health Conservation Under Changing Climatic Conditions
inferred← citeshttps://doi.org/10.1007/978-981-19-0733-3_11openalex-snapshot
Extreme Microorganisms for Sustainable Agriculture
inferred← citeshttps://doi.org/10.1007/978-981-19-3696-8_9openalex-snapshot
Microbiome-Based Sustainable Agriculture Targeting Plant Protection
inferred← citeshttps://doi.org/10.1007/978-981-19-5029-2_1openalex-snapshot
Fungal Microbiomes: The Functional Potential for Plant Growth Promotion and Opportunities for Agriculture
inferred← citeshttps://doi.org/10.1007/978-981-32-9664-0_2openalex-snapshot
Rhizoremediation: A Sustainable Approach to Improve the Quality and Productivity of Polluted Soils
inferred← citeshttps://doi.org/10.1007/978-981-32-9824-8_7openalex-snapshot
Microbiome: Effect on Plant System, Current Application and Future Aspect
inferred← citeshttps://doi.org/10.1007/978-981-92-3665-7_7openalex-snapshot
Advancing Plant Microbiome Engineering: Recent Innovations in Bioinoculant-Based and Host-Mediated Strategies
inferred← citeshttps://doi.org/10.1007/978-981-95-2294-1_10openalex-snapshot
Microbiomes: Exploring their Potentials and Developing Strategies for Sustainable Legume Production
inferred← citeshttps://doi.org/10.1007/978-981-95-9031-5_7openalex-snapshot
Role of Soil and Plant Microbiome in Sustainable Agriculture
inferred← citeshttps://doi.org/10.1007/978-981-97-0633-4_1openalex-snapshot
Exploring Beneficial Microbes and Their Multifaceted Applications: An Overview
inferred← citeshttps://doi.org/10.1007/978-981-97-0633-4_8openalex-snapshot
Microbial Inoculants and Their Role in Abiotic Stress Management
inferred← citeshttps://doi.org/10.1007/978-981-99-3561-1_20openalex-snapshot
Phyllosphere Engineering: Tailoring Leaf Surface Microbes for Boosting Plant Tolerance
inferred← citeshttps://doi.org/10.1007/978-981-99-9388-8_11openalex-snapshot
Zinc-Solubilizing Microorganisms: Contributions in Nutrient Availability and Implications for Crop Productivity in Sustainable Agriculture
inferred← citeshttps://doi.org/10.1007/s00203-022-03321-xopenalex-snapshot
The involvement of organic acids in soil fertility, plant health and environment sustainability
inferred← citeshttps://doi.org/10.1007/s00248-019-01452-1openalex-snapshot
Mutualistic Outcomes Across Plant Populations, Microbes, and Environments in the Duckweed Lemna minor
inferred← citeshttps://doi.org/10.1007/s00248-020-01580-zopenalex-snapshot
Gut Microbiota of Five Sympatrically Farmed Marine Fish Species in the Aegean Sea
inferred← citeshttps://doi.org/10.1007/s00248-022-02051-3openalex-snapshot
Multifarious Responses of Forest Soil Microbial Community Toward Climate Change
inferred← citeshttps://doi.org/10.1007/s00253-021-11147-8openalex-snapshot
Effect of pluronic block polymers and N-acetylcysteine culture media additives on growth rate and fatty acid composition of six marine microalgae species
inferred← citeshttps://doi.org/10.1007/s00253-021-11555-wopenalex-snapshot
Towards sustainable agriculture: rhizosphere microbiome engineering
inferred← citeshttps://doi.org/10.1007/s00253-024-13143-0openalex-snapshot
Genetic control of rhizosphere microbiome of the cotton plants under field conditions
inferred← citeshttps://doi.org/10.1007/s00344-024-11297-9openalex-snapshot
Potassium Solubilizing Microorganisms as Potential Biofertilizer: A Sustainable Climate-Resilient Approach to Improve Soil Fertility and Crop Production in Agriculture
inferred← citeshttps://doi.org/10.1007/s00374-021-01590-0openalex-snapshot
Spatial analysis of the root system coupled to microbial community inoculation shed light on rhizosphere bacterial community assembly
inferred← citeshttps://doi.org/10.1007/s00425-022-03997-xopenalex-snapshot
Mitigating abiotic stress: microbiome engineering for improving agricultural production and environmental sustainability
inferred← citeshttps://doi.org/10.1007/s00705-026-06531-6openalex-snapshot
Plant viruses and the microbiome: a complex network shaping plant health and disease resistance
inferred← citeshttps://doi.org/10.1007/s10123-025-00691-2openalex-snapshot
Dysbiosis of the rice leaf phyllomicrobiome induced by Magnaporthe oryzae infection: evidence from metabarcoding and microbiome imprinting
inferred← citeshttps://doi.org/10.1007/s10340-018-0973-1openalex-snapshot
Asaia symbionts interfere with infection by Flavescence dorée phytoplasma in leafhoppers
inferred← citeshttps://doi.org/10.1007/s10344-026-02092-wopenalex-snapshot
Gut microbiome of captive and wild Western capercaillie: Potential implications on post-release adaptation success in different habitats
inferred← citeshttps://doi.org/10.1007/s10661-022-10769-3openalex-snapshot
Micro(nano)plastic pollution in terrestrial ecosystem: emphasis on impacts of polystyrene on soil biota, plants, animals, and humans
inferred← citeshttps://doi.org/10.1007/s10811-026-03991-wopenalex-snapshot
Contrasting patterns of kelp-associated bacterial community dynamics between farmed and wild Saccharina latissima throughout an aquaculture season
inferred← citeshttps://doi.org/10.1007/s11033-022-07271-xopenalex-snapshot
Bioprocesses optimization and anticancer activity of camptothecin from Aspergillus flavus, an endophyte of in vitro cultured Astragalus fruticosus
inferred← citeshttps://doi.org/10.1007/s11104-017-3184-2openalex-snapshot
Molecular dynamics in germinating, endophyte-colonized quinoa seeds
inferred← citeshttps://doi.org/10.1007/s11104-019-04202-xopenalex-snapshot
Microbes mediated plant stress tolerance in saline agricultural ecosystem
inferred← citeshttps://doi.org/10.1007/s11104-021-04869-1openalex-snapshot
Microplastics in soil-plant system: effects of nano/microplastics on plant photosynthesis, rhizosphere microbes and soil properties in soil with different residues
inferred← citeshttps://doi.org/10.1007/s11104-021-04892-2openalex-snapshot
A microbiome engineering framework to evaluate rhizobial symbionts of legumes
inferred← citeshttps://doi.org/10.1007/s11104-022-05709-6openalex-snapshot
Live soil inocula, not host population or domestication status, is the predominant driver of growth benefits to cowpea
inferred← citeshttps://doi.org/10.1007/s11104-023-06164-7openalex-snapshot
Effective rhizobia enhance legume growth during subsequent drought despite water costs associated with nitrogen fixation
inferred← citeshttps://doi.org/10.1007/s11104-024-06947-6openalex-snapshot
Artificially selected rhizosphere microbiota modify plant growth in a soil-independent and species-dependent way
inferred← citeshttps://doi.org/10.1007/s11104-025-07694-yopenalex-snapshot
Host genetics influences the root microbiome of Pinus radiata
inferred← citeshttps://doi.org/10.1007/s11104-025-07937-yopenalex-snapshot
Synthetic microbial communities: Bridging research and application in second-generation bioenergy feedstock microbiomes
inferred← citeshttps://doi.org/10.1007/s11104-026-08578-5openalex-snapshot
Integrating plant microbiome for resilient agriculture and a sustainable environment
inferred← citeshttps://doi.org/10.1007/s11104-026-09174-3openalex-snapshot
A native core microbiome across the soil–plant continuum of the selenium hyperaccumulator Cardamine hupingshanensis
inferred← citeshttps://doi.org/10.1007/s11274-021-03168-2openalex-snapshot
The endophytome (plant-associated microbiome): methodological approaches, biological aspects, and biotech applications
inferred← citeshttps://doi.org/10.1007/s11356-021-14777-7openalex-snapshot
Establishment of actinobacteria–Satureja hortensis interactions under future climate CO2-enhanced crop productivity in drought environments of Saudi Arabia
inferred← citeshttps://doi.org/10.1007/s11356-021-17164-4openalex-snapshot
Storage of soil microbiome for application in sustainable agriculture: prospects and challenges
inferred← citeshttps://doi.org/10.1007/s11356-023-26944-zopenalex-snapshot
Identifying the effects of cropping with different pear cultivars on microbial community composition and networks in orchard soils
inferred← citeshttps://doi.org/10.1007/s12042-022-09323-9openalex-snapshot
Ex vitro Morpho-Physiological Screening of Drought Tolerant Sugarcane Epimutants Generated Via 5-Azacytidine and Imidacloprid Treatments
inferred← citeshttps://doi.org/10.1007/s12223-023-01055-xopenalex-snapshot
Fine-scale mapping of the microbiome on phylloplane and spermoplane of aromatic and non-aromatic rice genotypes
inferred← citeshttps://doi.org/10.1007/s13199-018-0574-zopenalex-snapshot
Building plant microbiome vault: a future biotechnological resource
inferred← citeshttps://doi.org/10.1007/s13199-020-00712-wopenalex-snapshot
Stress tolerance alteration in the freshwater cnidarian green hydra (Hydra viridissima) via symbiotic algae mutagenesis
inferred← citeshttps://doi.org/10.1007/s13199-025-01106-6openalex-snapshot
Phyllosphere microbiome-mediated plant defense: from natural biocontrol to integrated pest management
inferred← citeshttps://doi.org/10.1007/s13213-019-01448-9openalex-snapshot
Rhizosphere microbiome: revisiting the synergy of plant-microbe interactions
inferred← citeshttps://doi.org/10.1007/s13353-024-00867-yopenalex-snapshot
HO-CR and HOLL-CR: new forms of winter oilseed rape (Brassica napus L.) with altered fatty acid composition and resistance to selected pathotypes of Plasmodiophora brassicae (clubroot)
inferred← citeshttps://doi.org/10.1007/s13593-019-0577-zopenalex-snapshot
Artificial selection of insects to bioconvert pre-consumer organic wastes. A review
inferred← citeshttps://doi.org/10.1007/s42452-021-04301-4openalex-snapshot
Phytoremediation: a sustainable environmental technology for heavy metals decontamination
inferred← citeshttps://doi.org/10.1007/s42729-023-01220-8openalex-snapshot
Contribution of Leaf-Associated Microorganisms from Native Andean Ericaceae against Botrytis cinerea in Vaccinium corymbosum Cultivars
inferred← citeshttps://doi.org/10.1007/s42729-023-01397-yopenalex-snapshot
Harnessing Phyllosphere Microbiome for Improving Soil Fertility, Crop Production, and Environmental Sustainability
inferred← citeshttps://doi.org/10.1007/s42729-026-03244-2openalex-snapshot
From Atacama to Patagonia: A Small Cross-Site Core and Large Site-Exclusive Microbiomes in Chilean Biocrusts
inferred← citeshttps://doi.org/10.1007/s44154-021-00018-xopenalex-snapshot
Unlocking the bacterial contact-dependent antibacterial activity to engineer a biocontrol alliance of two species from natural incompatibility to artificial compatibility
inferred← citeshttps://doi.org/10.1007/s44154-026-00294-5openalex-snapshot
Protective holobiome promotes strawberry tolerance of biotic stresses
inferred← citeshttps://doi.org/10.1007/s44372-026-00837-0openalex-snapshot
Plant–microbe interactions as drivers of sustainable agriculture: molecular mechanisms, stress mitigation, and future prospects
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20789-9openalex-snapshot
Models in Microbial Ecology
inferred← citeshttps://doi.org/10.1016/b978-0-12-817109-7.00002-xopenalex-snapshot
Core microbiomes: Characterization and identification
inferred← citeshttps://doi.org/10.1016/b978-0-12-817109-7.00003-1openalex-snapshot
Molecular mechanism of plant-microbe interactions
inferred← citeshttps://doi.org/10.1016/b978-0-12-818732-6.00025-3openalex-snapshot
Microbial consortia: Concept and application in fruit crop management
inferred← citeshttps://doi.org/10.1016/b978-0-12-819715-8.00001-xopenalex-snapshot
Emerging insights on the potential role of plant-associated microorganisms in sustainable agriculture
inferred← citeshttps://doi.org/10.1016/b978-0-12-819715-8.00009-4openalex-snapshot
Maize microbiome: current insights for the sustainable agriculture
inferred← citeshttps://doi.org/10.1016/b978-0-12-820526-6.00001-4openalex-snapshot
Tiny microbes, big yields: Microorganisms for enhancing food crop production for sustainable development
inferred← citeshttps://doi.org/10.1016/b978-0-12-822941-5.00011-9openalex-snapshot
Plant–soil biota interactions
inferred← citeshttps://doi.org/10.1016/b978-0-12-823831-8.00007-4openalex-snapshot
Designer plants for climate-resilient phytoremediation
inferred← citeshttps://doi.org/10.1016/b978-0-323-85163-3.00017-xopenalex-snapshot
Microbiome-based approaches to enhance soil health in arable land
inferred← citeshttps://doi.org/10.1016/b978-0-323-88504-1.00014-5openalex-snapshot
Rhizosphere microbiome engineering
inferred← citeshttps://doi.org/10.1016/b978-0-323-91595-3.00001-xopenalex-snapshot
Role of microbial biotechnology for strain improvement for agricultural sustainability
inferred← citeshttps://doi.org/10.1016/b978-0-323-91900-5.00002-3openalex-snapshot
Genome editing of microbes for degradation of pesticides
inferred← citeshttps://doi.org/10.1016/b978-0-323-96005-2.00003-9openalex-snapshot
Application of bioinoculants in horticulture, plantation, and forest farming: is it truly ecologically sustainable?
inferred← citeshttps://doi.org/10.1016/b978-0-323-98394-5.00017-1openalex-snapshot
Plant microbiome: trends and prospects for sustainable agriculture management
inferred← citeshttps://doi.org/10.1016/b978-0-443-16030-1.00016-xopenalex-snapshot
Rhizospheric microbiome: organization and bioinformatics studies
inferred← citeshttps://doi.org/10.1016/b978-0-443-19121-3.00010-7openalex-snapshot
Phytomicrobiome in modulating plant growth and stress resilience: an insight into the functions and emerging perspectives in agriculture
inferred← citeshttps://doi.org/10.1016/b978-0-443-22348-8.00015-5openalex-snapshot
Microbiome engineering to improve animal health
inferred← citeshttps://doi.org/10.1016/b978-0-443-24135-2.00004-9openalex-snapshot
CRISPR technologies for crop improvement: An updated overview and future perspective
inferred← citeshttps://doi.org/10.1016/b978-0-443-24776-7.00007-0openalex-snapshot
Seed microbiome genomics
inferred← citeshttps://doi.org/10.1016/b978-0-443-24776-7.00008-2openalex-snapshot
Seed microbiome engineering
inferred← citeshttps://doi.org/10.1016/b978-0-443-27628-6.00007-3openalex-snapshot
Plant Microbiome Strategies in Management of Climate-Ready Agriculture
inferred← citeshttps://doi.org/10.1016/b978-0-443-33963-9.00001-6openalex-snapshot
Survey of citrus microbiome: their diseases and management aspects
inferred← citeshttps://doi.org/10.1016/bs.aambs.2018.07.002openalex-snapshot
Diversity-Function Relationships in Natural, Applied, and Engineered Microbial Ecosystems
inferred← citeshttps://doi.org/10.1016/bs.agron.2022.04.002openalex-snapshot
Microbial trait-based approaches for agroecosystems
inferred← citeshttps://doi.org/10.1016/j.agee.2018.07.003openalex-snapshot
Rhizosphere biodiversity as a premise for application in bio-economy
inferred← citeshttps://doi.org/10.1016/j.apsoil.2016.11.006openalex-snapshot
The nutrient preference of plants influences their rhizosphere microbiome
inferred← citeshttps://doi.org/10.1016/j.apsoil.2019.103439openalex-snapshot
Approaches for the discrimination of suppressive soils for Pythium irregulare disease
inferred← citeshttps://doi.org/10.1016/j.apsoil.2022.104503openalex-snapshot
Consortia-based microbial inoculants for sustaining agricultural activities
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.106881openalex-snapshot
Modulation of rhizosphere bacterial community of tomato upon repeated exposure to salinity stress
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740770openalex-snapshot
Can the genetic background modulate the effects of feed additives? Answers from gut microbiome and transcriptome interactions in farmed gilthead sea bream (Sparus aurata) fed with a mix of phytogenics, organic acids or probiotics
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741654openalex-snapshot
Biological analysis of phage vB_AhaP_PT2 and treatment rescued crucian carp infected with Aeromonas hydrophila
inferred← citeshttps://doi.org/10.1016/j.biocon.2018.11.016openalex-snapshot
The microbiome in threatened species conservation
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2016.08.005openalex-snapshot
Microbially Mediated Plant Salt Tolerance and Microbiome-based Solutions for Saline Agriculture
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2019.03.010openalex-snapshot
New frontiers in agriculture productivity: Optimised microbial inoculants and in situ microbiome engineering
inferred← citeshttps://doi.org/10.1016/j.bjm.2016.10.005openalex-snapshot
Microbial interactions: ecology in a molecular perspective
inferred← citeshttps://doi.org/10.1016/j.cej.2022.140782openalex-snapshot
Self-assembly of ammonium assimilation microbiomes regulated by COD/N ratio
inferred← citeshttps://doi.org/10.1016/j.cell.2021.01.005openalex-snapshot
Genome engineering for crop improvement and future agriculture
inferred← citeshttps://doi.org/10.1016/j.chom.2017.07.004openalex-snapshot
Establishing Causality: Opportunities of Synthetic Communities for Plant Microbiome Research
inferred← citeshttps://doi.org/10.1016/j.coisb.2023.100455openalex-snapshot
Evolutionary implications of host genetic control for engineering beneficial microbiomes
inferred← citeshttps://doi.org/10.1016/j.crmicr.2021.100094openalex-snapshot
Biofertilizers: An ecofriendly technology for nutrient recycling and environmental sustainability
inferred← citeshttps://doi.org/10.1016/j.crmicr.2024.100285openalex-snapshot
Drought stress mitigation through bioengineering of microbes and crop varieties for sustainable agriculture and food security
inferred← citeshttps://doi.org/10.1016/j.crmicr.2025.100421openalex-snapshot
The dual nature of plant growth-promoting bacteria: Benefits, risks, and pathways to sustainable deployment
inferred← citeshttps://doi.org/10.1016/j.crmicr.2026.100647openalex-snapshot
Seed bacterial microbiota: transmission, community assembly, and prospects for engineering heritable functions in crops
inferred← citeshttps://doi.org/10.1016/j.csbj.2023.07.021openalex-snapshot
Assembly of an active microbial consortium by engineering compatible combinations containing foreign and native biocontrol bacteria of kiwifruit
inferred← citeshttps://doi.org/10.1016/j.dci.2023.104690openalex-snapshot
The adaptive microbiome hypothesis and immune interactions in amphibian mucus
inferred← citeshttps://doi.org/10.1016/j.eng.2022.07.010openalex-snapshot
Microbiome Engineering: A Promising Approach to Improve Coral Health
inferred← citeshttps://doi.org/10.1016/j.engmic.2022.100048openalex-snapshot
Methods of DNA introduction for the engineering of commensal microbes
inferred← citeshttps://doi.org/10.1016/j.envint.2021.106438openalex-snapshot
A global overview of the trophic structure within microbiomes across ecosystems
inferred← citeshttps://doi.org/10.1016/j.envpol.2022.118851openalex-snapshot
Emerging frontiers in microbe-mediated pesticide remediation: Unveiling role of omics and In silico approaches in engineered environment
inferred← citeshttps://doi.org/10.1016/j.envres.2020.109927openalex-snapshot
Bioaugmentation with Thiobacillus sp. H1 in an autotrophic denitrification desulfurization microbial reactor: Microbial community changes and relationship
inferred← citeshttps://doi.org/10.1016/j.fmre.2023.03.002openalex-snapshot
Fauna-microbe diversity coupling lost in agricultural soils: Implications from the bacteria hidden in earthworm gut
inferred← citeshttps://doi.org/10.1016/j.foodres.2024.114358openalex-snapshot
Framework for valorizing waste- and by-products through insects and their microbiomes for food and feed
inferred← citeshttps://doi.org/10.1016/j.foreco.2018.01.037openalex-snapshot
Community-based biotic effects as determinants of tree resistance to pests and pathogens
inferred← citeshttps://doi.org/10.1016/j.funbio.2019.04.006openalex-snapshot
Food security in 2044: How do we control the fungal threat?
inferred← citeshttps://doi.org/10.1016/j.funeco.2018.02.003openalex-snapshot
Whitebark pine foliar fungal endophyte communities in the southern Cascade Range, USA: Host mycobiomes and white pine blister rust
inferred← citeshttps://doi.org/10.1016/j.gde.2017.09.003openalex-snapshot
Darwin was right: where now for experimental evolution?
inferred← citeshttps://doi.org/10.1016/j.heliyon.2021.e06399openalex-snapshot
Fungal and metabolome diversity of the rhizosphere and endosphere of Phragmites australis in an AMD-polluted environment
inferred← citeshttps://doi.org/10.1016/j.jafr.2025.102561openalex-snapshot
Synthetic phyllosphere microbiota enhance wax gourd plant growth and suppress Phytophthora capsici by reshaping microbial communities
inferred← citeshttps://doi.org/10.1016/j.jafr.2026.102834openalex-snapshot
Plant growth-promoting rhizobacteria for controlling rice diseases: What is known and what is next?
inferred← citeshttps://doi.org/10.1016/j.jenvman.2018.04.022openalex-snapshot
The rhizosphere microbiome: Significance in rhizoremediation of polyaromatic hydrocarbon contaminated soil
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2022.129619openalex-snapshot
Flooding-induced rhizosphere Clostridium assemblage prevents root-to-shoot cadmium translocation in rice by promoting the formation of root apoplastic barriers
inferred← citeshttps://doi.org/10.1016/j.mib.2017.03.006openalex-snapshot
Managing the plant microbiome for biocontrol fungi: examples from Hypocreales
inferred← citeshttps://doi.org/10.1016/j.mib.2017.11.023openalex-snapshot
Road MAPs to engineer host microbiomes
inferred← citeshttps://doi.org/10.1016/j.mib.2018.11.007openalex-snapshot
Simple organizing principles in microbial communities
inferred← citeshttps://doi.org/10.1016/j.mib.2022.102263openalex-snapshot
Microbiome rescue: directing resilience of environmental microbial communities
inferred← citeshttps://doi.org/10.1016/j.mib.2023.102400openalex-snapshot
Artificial selection of microbial communities: what have we learnt and how can we improve?
inferred← citeshttps://doi.org/10.1016/j.micres.2018.01.005openalex-snapshot
Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms
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