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Chromatographic Alignment of ESI-LC-MS Proteomics Data Sets by Ordered Bijective Interpolated Warping
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Correlation optimized warping and dynamic time warping as preprocessing methods for chromatographic data
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Alignment and statistical difference analysis of complex peptide data sets generated by multidimensional LC‐MS
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Multivariate approaches for efficient detection of potential metabolites from liquid chromatography/mass spectrometry data
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An improved algorithm for matching biological sequences
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Evaluation of novel sample identification approach based on chromatographic fingerprint set correlation homogeneity analysis
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A comparison of two algorithms for warping of analytical signals
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Chromatographic alignment by warping and dynamic programming as a pre-processing tool for PARAFAC modelling of liquid chromatography–mass spectrometry data
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Aligning of single and multiple wavelength chromatographic profiles for chemometric data analysis using correlation optimised warping
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Determination of metal ions using ion chromatography and indirect amperometric detection
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Screening of Biomarkers in Rat Urine Using LC/Electrospray Ionization-MS and Two-Way Data Analysis
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Quantitative Proteomic Analysis by Accurate Mass Retention Time Pairs
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Metal Ion Complexes of EDTA: A Solute System for Density Gradient Ultracentrifugation Analysis of Lipoproteins
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Differential Mass Spectrometry: A Label-Free LC−MS Method for Finding Significant Differences in Complex Peptide and Protein Mixtures
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Comprehensive Label-Free Method for the Relative Quantification of Proteins from Biological Samples
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Disease spread leads Britain to pull plug on trial badger cull
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Large-scale analysis of the yeast proteome by multidimensional protein identification technology
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Proteomic characterization of the human centrosome by protein correlation profiling
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The need for a public proteomics repository
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A common open representation of mass spectrometry data and its application to proteomics research
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Mass spectrometry: gaining mass appeal in proteomics
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Signal Maps for Mass Spectrometry-based Comparative Proteomics
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Aligning gene expression time series with time warping algorithms
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Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum
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Large-Scale Proteomic Analysis of the Human Spliceosome
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Untargeted Metabolomics Analysis Reveals a Link between ETHE1-Mediated Disruptive Redox State and Altered Metabolic Regulation
inferred← citeshttps://doi.org/10.1021/acs.jproteome.6b00669openalex-snapshot
Untargeted Metabolomics Analysis of ABCC6-Deficient Mice Discloses an Altered Metabolic Liver Profile
inferred← citeshttps://doi.org/10.1021/acs.jproteome.6b00752openalex-snapshot
Large-Scale and Targeted Quantitative Cross-Linking MS Using Isotope-Labeled Protein Interaction Reporter (PIR) Cross-Linkers
inferred← citeshttps://doi.org/10.1021/acsearthspacechem.6c00084openalex-snapshot
Distinct Lipid Compositions in Seawater and the Sea Surface Microlayer Measured with Liquid Chromatography and High-Resolution Mass Spectrometry
inferred← citeshttps://doi.org/10.1021/acsmeasuresciau.6c00061openalex-snapshot
A Two-Step Prioritization Framework for the Nontargeted LC-HRMS Analysis of Chemicals of Environmental Concern and Byproducts during Drinking Water Production
inferred← citeshttps://doi.org/10.1021/acsmeasuresciau.6c00271openalex-snapshot
Improved Chromatographic Alignment of GC-IMS Data Using Spectral Information
inferred← citeshttps://doi.org/10.1021/bk-2015-1199.ch012openalex-snapshot
Approaching the Chemometric Modeling of Realistically Diverse Biochemical Data
inferred← citeshttps://doi.org/10.1021/cr068288jopenalex-snapshot
Accurate Mass Measurements in Proteomics
inferred← citeshttps://doi.org/10.1021/ef201312mopenalex-snapshot
Application of Saturates, Aromatics, Resins, and Asphaltenes Crude Oil Fractionation for Detailed Chemical Characterization of Heavy Crude Oils by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Equipped with Atmospheric Pressure Photoionization
inferred← citeshttps://doi.org/10.1021/jasms.0c00478openalex-snapshot
Recognizing Contamination Fragment Ions in Liquid Chromatography–Tandem Mass Spectrometry Data
inferred← citeshttps://doi.org/10.1021/pr900427qopenalex-snapshot
CLUE-TIPS, Clustering Methods for Pattern Analysis of LC−MS Data
inferred← citeshttps://doi.org/10.1021/pr9010124openalex-snapshot
Time Alignment Algorithms Based on Selected Mass Traces for Complex LC-MS Data
inferred← citeshttps://doi.org/10.1021/pr901194xopenalex-snapshot
Activation of Aortic Endothelial Cells by Oxidized Phospholipids: A Phosphoproteomic Analysis
inferred← citeshttps://doi.org/10.1038/nmeth.3954openalex-snapshot
TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics
inferred← citeshttps://doi.org/10.1038/nprot.2011.454openalex-snapshot
Meta-analysis of untargeted metabolomic data from multiple profiling experiments
inferred← citeshttps://doi.org/10.1038/s41467-022-28743-5openalex-snapshot
Intestinal AMPK modulation of microbiota mediates crosstalk with brown fat to control thermogenesis
inferred← citeshttps://doi.org/10.1038/s41477-017-0023-7openalex-snapshot
Cytosolic acetyl-CoA promotes histone acetylation predominantly at H3K27 in Arabidopsis
inferred← citeshttps://doi.org/10.1038/s41589-025-01909-0openalex-snapshot
Reactivity-based metabolomics reveal cysteine has glyoxalase 1-like and glyoxalase 2-like activities
inferred← citeshttps://doi.org/10.1038/s41596-019-0167-1openalex-snapshot
Systems-level analysis of isotopic labeling in untargeted metabolomic data by X13CMS
inferred← citeshttps://doi.org/10.1038/s41596-022-00710-wopenalex-snapshot
Using MetaboAnalyst 5.0 for LC–HRMS spectra processing, multi-omics integration and covariate adjustment of global metabolomics data
inferred← citeshttps://doi.org/10.1038/s41598-020-66662-xopenalex-snapshot
Malodorous biogenic amines in Escherichia coli-caused urinary tract infections in women—a metabolomics approach
inferred← citeshttps://doi.org/10.1038/s41598-022-05451-0openalex-snapshot
Biomarker selection and a prospective metabolite-based machine learning diagnostic for lyme disease
inferred← citeshttps://doi.org/10.1038/s41598-023-39661-xopenalex-snapshot
Streamlined identification of strain engineering targets for bioprocess improvement using metabolic pathway enrichment analysis
inferred← citeshttps://doi.org/10.1038/s41598-024-67459-yopenalex-snapshot
Application of untargeted liquid chromatography-mass spectrometry to routine analysis of food using three-dimensional bucketing and machine learning
inferred← citeshttps://doi.org/10.1038/s41598-025-00373-zopenalex-snapshot
Plasma metabolomics signatures predict COVID-19 patient outcome at ICU admission comparable to clinical scores
inferred← citeshttps://doi.org/10.1038/s42003-024-05844-zopenalex-snapshot
SIMPEL: using stable isotopes to elucidate dynamics of context specific metabolism
inferred← citeshttps://doi.org/10.1038/sdata.2014.29openalex-snapshot
Metabolic differences in ripening of Solanum lycopersicum ‘Ailsa Craig’ and three monogenic mutants
inferred← citeshttps://doi.org/10.1038/sdata.2017.190openalex-snapshot
Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease
inferred← citeshttps://doi.org/10.1039/9781782626732-00133openalex-snapshot
Algorithms for MS1-Based Quantitation
inferred← citeshttps://doi.org/10.1039/9781782626985-00129openalex-snapshot
Overview and Implementation of Mass Spectrometry-Based Label-Free Quantitative Proteomics
inferred← citeshttps://doi.org/10.1039/c2an35931fopenalex-snapshot
A novel chromatographic peak alignment method coupled with trilinear decomposition for three dimensional chromatographic data analysis to obtain the second-order advantage
inferred← citeshttps://doi.org/10.1039/c4mb00395kopenalex-snapshot
A new approach combining LC-MS and multivariate statistical analysis for revealing changes in histone modification levels
inferred← citeshttps://doi.org/10.1039/c6an00919kopenalex-snapshot
Predictive chromatography of peptides and proteins as a complementary tool for proteomics
inferred← citeshttps://doi.org/10.1039/c9ra03789fopenalex-snapshot
A matching algorithm with isotope distribution pattern in LC-MS based on support vector machine (SVM) learning model
inferred← citeshttps://doi.org/10.1039/d2ay00314gopenalex-snapshot
Advanced tuning of the ion management parameters in GC × GC-HRMS using a Fourier transform Orbitrap mass analyzer for pixel-based data handling and multivariate analysis
inferred← citeshttps://doi.org/10.1074/mcp.m900177-mcp200openalex-snapshot
IDEAL-Q, an Automated Tool for Label-free Quantitation Analysis Using an Efficient Peptide Alignment Approach and Spectral Data Validation
inferred← citeshttps://doi.org/10.1074/mcp.tir118.001132openalex-snapshot
DIAlignR Provides Precise Retention Time Alignment Across Distant Runs in DIA and Targeted Proteomics
inferred← citeshttps://doi.org/10.1080/14789450.2020.1821656openalex-snapshot
Update on Proteomic approaches to uncovering virus-induced protein alterations and virus –host protein interactions during the progression of viral infection
inferred← citeshttps://doi.org/10.1080/26896583.2020.1868866openalex-snapshot
Short-term metabolic disruptions in urine of mouse models following exposure to low doses of oxygen ion radiation
inferred← citeshttps://doi.org/10.1088/1752-7163/aaf3dcopenalex-snapshot
Associations of diet and lifestyle factors with common volatile organic compounds in exhaled breath of average-risk individuals
inferred← citeshttps://doi.org/10.1089/cmb.2007.0117openalex-snapshot
Computational Quantification of Peptides from LC-MS Data
inferred← citeshttps://doi.org/10.1089/cmb.2010.0155openalex-snapshot
Shape-Based Feature Matching Improves Protein Identification via LC-MS and Tandem MS
inferred← citeshttps://doi.org/10.1089/omi.2012.0019openalex-snapshot
A Probabilistic Framework for Peptide and Protein Quantification from Data-Dependent and Data-Independent LC-MS Proteomics Experiments
inferred← citeshttps://doi.org/10.1089/omi.2013.0010openalex-snapshot
Evaluation of Normalization Methods to Pave the Way Towards Large-Scale LC-MS-Based Metabolomics Profiling Experiments
inferred← citeshttps://doi.org/10.1093/bfgp/elp008openalex-snapshot
Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics
inferred← citeshttps://doi.org/10.1093/bib/bbt080openalex-snapshot
LC-MS alignment in theory and practice: a comprehensive algorithmic review
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa037openalex-snapshot
Targeted realignment of LC-MS profiles by neighbor-wise compound-specific graphical time warping with misalignment detection
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac407openalex-snapshot
Batch alignment via retention orders for preprocessing large-scale multi-batch LC-MS experiments
inferred← citeshttps://doi.org/10.1093/bioinformatics/btm209openalex-snapshot
A geometric approach for the alignment of liquid chromatography—mass spectrometry data
inferred← citeshttps://doi.org/10.1093/bioinformatics/btp343openalex-snapshot
ChromA: signal-based retention time alignment for chromatography–mass spectrometry data
inferred← citeshttps://doi.org/10.1093/bioinformatics/btt435openalex-snapshot
Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets
inferred← citeshttps://doi.org/10.1093/bioinformatics/btu299openalex-snapshot
PeakLink: a new peptide peak linking method in LC-MS/MS using wavelet and SVM
inferred← citeshttps://doi.org/10.1093/bioinformatics/btv564openalex-snapshot
Warpgroup: increased precision of metabolomic data processing by consensus integration bound analysis
inferred← citeshttps://doi.org/10.1097/tp.0000000000004529openalex-snapshot
Metabolomics Differences of the Donor Livers Between In Situ and Ex Situ Conditions During Ischemia-free Liver Transplantation
inferred← citeshttps://doi.org/10.1098/rsos.240890openalex-snapshot
Phytochemical drivers of insect herbivory: a functional toolbox to support agroecological diversification
inferred← citeshttps://doi.org/10.1099/mic.0.001662openalex-snapshot
Hypoxia-induced production of the cyclolipodepsipeptide BE-43547 by Micromonospora sp. RV43
inferred← citeshttps://doi.org/10.1101/002782openalex-snapshot
A workflow for UPLC-MS non-targeted metabolomic profiling in large human population-based studies
inferred← citeshttps://doi.org/10.1101/2020.03.26.010769openalex-snapshot
A Reference Feature based method for Quantification and Identification of LC-MS based untargeted metabolomics
inferred← citeshttps://doi.org/10.1101/2021.12.05.471237openalex-snapshot
“A novel paradigm for optimal mass feature peak picking in large scale LC-MS datasets using the ‘isopair’: isoLock, autoCredential and anovAlign”
inferred← citeshttps://doi.org/10.1101/2022.02.21.481365openalex-snapshot
Shifting a Cellular Metabolic Landscape Identifies a Refractory Environment for Flavivirus Replication
inferred← citeshttps://doi.org/10.1109/bibm.2010.5706589openalex-snapshot
A new method for alignment of LC-MALDI-TOF data
inferred← citeshttps://doi.org/10.1109/iembs.2008.4650109openalex-snapshot
Multi-class alignment of LC-MS data using probabilistic-based mixture regression models
inferred← citeshttps://doi.org/10.1109/jproc.2008.925421openalex-snapshot
The Future of Large-Scale Collaborative Proteomics
inferred← citeshttps://doi.org/10.1111/mmi.12374openalex-snapshot
Metabolic adaptations of L eishmania donovani in relation to differentiation, drug resistance, and drug pressure
inferred← citeshttps://doi.org/10.1111/tpj.16737openalex-snapshot
Genome‐wide association identifies a BAHD acyltransferase activity that assembles an ester of glucuronosylglycerol and phenylacetic acid
inferred← citeshttps://doi.org/10.1126/sciadv.aec8501openalex-snapshot
Vitronectin metabolically programs profibrotic macrophages in 3D cultures and idiopathic pulmonary fibrosis
inferred← citeshttps://doi.org/10.1128/msystems.01540-25openalex-snapshot
Seasonal patterns of DOM molecules are linked to microbial functions in the oligotrophic ocean
inferred← citeshttps://doi.org/10.1155/2011/450290openalex-snapshot
PolyAlign: A Versatile LC-MS Data Alignment Tool for Landmark-Selected and -Automated Use
inferred← citeshttps://doi.org/10.11606/d.9.2013.tde-01102013-112214openalex-snapshot
Investigação metabolômica da toxicidade da cocaína em ratos submetidos à privação de sono, utilizando cromatografia líquida acoplada à espectrometria de massas
inferred← citeshttps://doi.org/10.1186/1471-2105-12-439openalex-snapshot
SCFIA: a statistical corresponding feature identification algorithm for LC/MS
inferred← citeshttps://doi.org/10.1186/1471-2105-13-214openalex-snapshot
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
inferred← citeshttps://doi.org/10.1186/1471-2105-14-364openalex-snapshot
A flexible statistical model for alignment of label-free proteomics data - incorporating ion mobility and product ion information
inferred← citeshttps://doi.org/10.1186/1471-2105-7-530openalex-snapshot
MathDAMP: a package for differential analysis of metabolite profiles
inferred← citeshttps://doi.org/10.1186/1471-2105-8-255openalex-snapshot
The EIPeptiDi tool: enhancing peptide discovery in ICAT-based LC MS/MS experiments
inferred← citeshttps://doi.org/10.1186/1471-2105-9-375openalex-snapshot
Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements
inferred← citeshttps://doi.org/10.1186/1471-2105-9-423openalex-snapshot
LC-MSsim – a simulation software for liquid chromatography mass spectrometry data
inferred← citeshttps://doi.org/10.1186/1477-5956-9-s1-s10openalex-snapshot
A new method for alignment of LC-MALDI-TOF data
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