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Phosphoproteome Profiling Using an Isobaric Carrier without the Need for Phosphoenrichment

https://doi.org/10.1021/acs.analchem.1c04188
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s13361-016-1434-9openalex-snapshot
A Triple Knockout (TKO) Proteomics Standard for Diagnosing Ion Interference in Isobaric Labeling Experiments
inferredcites →https://doi.org/10.1016/j.cell.2020.10.044openalex-snapshot
Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
inferredcites →https://doi.org/10.1016/j.crmeth.2021.100138openalex-snapshot
Motif-centric phosphoproteomics to target kinase-mediated signaling pathways
inferredcites →https://doi.org/10.1016/j.mcpro.2021.100104openalex-snapshot
Quantitative Consequences of Protein Carriers in Immunopeptidomics and Tyrosine Phosphorylation MS2 Analyses
inferredcites →https://doi.org/10.1016/j.molimm.2009.02.018openalex-snapshot
STAT3 tyrosine phosphorylation is critical for interleukin 1 beta and interleukin-6 production in response to lipopolysaccharide and live bacteria
inferredcites →https://doi.org/10.1021/ac500140sopenalex-snapshot
Ion Coalescence of Neutron Encoded TMT 10-Plex Reporter Ions
inferredcites →https://doi.org/10.1021/ac502040vopenalex-snapshot
MultiNotch MS3 Enables Accurate, Sensitive, and Multiplexed Detection of Differential Expression across Cancer Cell Line Proteomes
inferredcites →https://doi.org/10.1021/ac900329xopenalex-snapshot
Coulombic Effects in Ion Mobility Spectrometry
inferredcites →https://doi.org/10.1021/acs.analchem.0c05126openalex-snapshot
Enhancing Comprehensive Analysis of Secreted Glycoproteins from Cultured Cells without Serum Starvation
inferredcites →https://doi.org/10.1021/acs.analchem.1c00012openalex-snapshot
Boosting Detection of Low-Abundance Proteins in Thermal Proteome Profiling Experiments by Addition of an Isobaric Trigger Channel to TMT Multiplexes
inferredcites →https://doi.org/10.1021/acs.analchem.5b04123openalex-snapshot
Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling
inferredcites →https://doi.org/10.1021/acs.analchem.7b04678openalex-snapshot
Neutralizing the Detrimental Effect of an N ‑Hydroxysuccinimide Quenching Reagent on Phosphopeptide in Quantitative Proteomics
inferredcites →https://doi.org/10.1021/acs.analchem.9b00024openalex-snapshot
Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells
inferredcites →https://doi.org/10.1021/acs.jproteome.0c00675openalex-snapshot
Optimizing Accuracy and Depth of Protein Quantification in Experiments Using Isobaric Carriers
inferredcites →https://doi.org/10.1021/acs.jproteome.1c00239openalex-snapshot
Ovalbumin Antigen-Specific Activation of Human T Cell Receptor Closely Resembles Soluble Antibody Stimulation as Revealed by BOOST Phosphotyrosine Proteomics
inferredcites →https://doi.org/10.1021/acs.jproteome.6b00753openalex-snapshot
Robust, Sensitive, and Automated Phosphopeptide Enrichment Optimized for Low Sample Amounts Applied to Primary Hippocampal Neurons
inferredcites →https://doi.org/10.1021/acs.jproteome.8b00217openalex-snapshot
Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3
inferredcites →https://doi.org/10.1021/acs.jproteome.9b00039openalex-snapshot
DO-MS: Data-Driven Optimization of Mass Spectrometry Methods
inferredcites →https://doi.org/10.1021/pr400098ropenalex-snapshot
Measuring and Managing Ratio Compression for Accurate iTRAQ/TMT Quantification
inferredcites →https://doi.org/10.1038/nbt.3327openalex-snapshot
High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics
inferredcites →https://doi.org/10.1038/nmeth.1714openalex-snapshot
MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
inferredcites →https://doi.org/10.1038/nprot.2008.150openalex-snapshot
The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
inferredcites →https://doi.org/10.1038/nrm.2017.89openalex-snapshot
Biochemical and cellular properties of insulin receptor signalling
inferredcites →https://doi.org/10.1038/s41467-018-03309-6openalex-snapshot
Benchmarking common quantification strategies for large-scale phosphoproteomics
inferredcites →https://doi.org/10.1038/s41467-021-23667-yopenalex-snapshot
Quantitative single-cell proteomics as a tool to characterize cellular hierarchies
inferredcites →https://doi.org/10.1038/s41587-021-01099-9openalex-snapshot
Personalized phosphoproteomics identifies functional signaling
inferredcites →https://doi.org/10.1038/s41592-020-01002-5openalex-snapshot
Defining the carrier proteome limit for single-cell proteomics
inferredcites →https://doi.org/10.1038/s41596-018-0006-9openalex-snapshot
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry
inferredcites →https://doi.org/10.1038/s41596-018-0014-9openalex-snapshot
High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform
inferredcites →https://doi.org/10.1038/s41596-021-00616-zopenalex-snapshot
Multiplexed single-cell proteomics using SCoPE2
inferredcites →https://doi.org/10.1074/mcp.ra119.001857openalex-snapshot
An Improved Boosting to Amplify Signal with Isobaric Labeling (iBASIL) Strategy for Precise Quantitative Single-cell Proteomics
inferredcites →https://doi.org/10.1074/mcp.t500007-mcp200openalex-snapshot
Highly Selective Enrichment of Phosphorylated Peptides from Peptide Mixtures Using Titanium Dioxide Microcolumns
inferredcites →https://doi.org/10.1074/mcp.tir119.001865openalex-snapshot
Tandem Mass Tag Approach Utilizing Pervanadate BOOST Channels Delivers Deeper Quantitative Characterization of the Tyrosine Phosphoproteome
inferredcites →https://doi.org/10.1093/nar/gkv1145openalex-snapshot
2016 update of the PRIDE database and its related tools
inferredcites →https://doi.org/10.1101/399774openalex-snapshot
Automated sample preparation for high-throughput single-cell proteomics
inferredcites →https://doi.org/10.1126/science.aaz6695openalex-snapshot
Unpicking the proteome in single cells
inferredcites →https://doi.org/10.1186/s13059-018-1547-5openalex-snapshot
SCoPE-MS: mass spectrometry of single mammalian cells quantifies proteome heterogeneity during cell differentiation
inferredcites →https://doi.org/10.1186/s13059-021-02267-5openalex-snapshot
Single-cell proteomic and transcriptomic analysis of macrophage heterogeneity using SCoPE2
inferredcites →https://doi.org/10.4049/jimmunol.0900331openalex-snapshot
Adenosine Blocks IFN-γ-Induced Phosphorylation of STAT1 on Serine 727 to Reduce Macrophage Activation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4495466openalex-extracted
The Application of Proteomics and Phosphoproteomics to Reveal the Molecular Mechanism of Salidroside in Ameliorating Myocardial Hypoxia
inferred← citeshttps://doi.org/10.1007/s00604-023-06033-1openalex-snapshot
Cerium ions immobilized magnetic graphite nitride decorated with L-Alanyl-L-Glutamine as new chelator for enrichment of phosphopeptides
inferred← citeshttps://doi.org/10.1016/j.aca.2024.343445openalex-snapshot
Comprehensive host cell proteins profiling in biopharmaceuticals by a sensitivity enhanced mass spectrometry strategy using TMT-labeling and signal boosting
inferred← citeshttps://doi.org/10.1016/j.ejmech.2023.116014openalex-snapshot
Identification of a novel potent CDK inhibitor degrading cyclinK with a superb activity to reverse trastuzumab-resistance in HER2-positive breast cancer in vivo
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e30433openalex-snapshot
The application of proteomics and phosphoproteomics to reveal the molecular mechanism of salidroside in ameliorating myocardial hypoxia
inferred← citeshttps://doi.org/10.1021/acs.analchem.3c01392openalex-snapshot
Sensitive N-Glycopeptide Profiling of Single and Rare Cells Using an Isobaric Labeling Strategy without Enrichment
inferred← citeshttps://doi.org/10.1021/acsomega.3c01392openalex-snapshot
One-STAGE Tip Method for TMT-Based Proteomic Analysis of a Minimal Amount of Cells
inferred← citeshttps://doi.org/10.1038/s41467-025-66883-6openalex-snapshot
Implementing N-terminomics and machine learning to probe Nt-arginylation
inferred← citeshttps://doi.org/10.1038/s42003-022-04400-xopenalex-snapshot
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics
inferred← citeshttps://doi.org/10.1042/ebc20240009openalex-snapshot
How mass spectrometry can be exploited to study AMPK
inferred← citeshttps://doi.org/10.1080/14789450.2023.2295872openalex-snapshot
Recent progress in quantitative phosphoproteomics
inferred← citeshttps://doi.org/10.70675/aea61e27z0cadz4558za7acz92d960d99b81openalex-snapshot
Décryptage des modifications précoces du phosphoprotéome en réponse à BMP9 et BMP10 dans les cellules endothéliales
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