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Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins

https://doi.org/10.1021/acs.biochem.2c00712

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Methotrexate Conjugates: A Molecular In Vivo Protein Tag

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Fluorogenically Active Leucine Zipper Peptides as Tag–Probe Pairs for Protein Imaging in Living Cells

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Peptide‐Templated Acyl Transfer: A Chemical Method for the Labeling of Membrane Proteins on Live Cells

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Discerning the Chemistry in Individual Organelles with Small‐Molecule Fluorescent Probes

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Coiled Coil Domains: Stability, Specificity, and Biological Implications

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Intense Blue Fluorescence in a Leucine Zipper Assembly

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Versatile Interacting Peptide (VIP) Tags for Labeling Proteins with Bright Chemical Reporters

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The intracellular trafficking pathway of transferrin

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Improving Coiled-coil Stability by Optimizing Ionic Interactions

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MiniVIPER Is a Peptide Tag for Imaging and Translocating Proteins in Cells

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Fluorescent Labeling of Proteins of Interest in Live Cells: Beyond Fluorescent Proteins

inferredcites →https://doi.org/10.1021/acs.bioconjchem.5b00131openalex-snapshot

An In-Cell Fluorogenic Tag–Probe System for Protein Dynamics Imaging Enabled by Cell-Penetrating Peptides

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Rapid Covalent Fluorescence Labeling of Membrane Proteins on Live Cells via Coiled-Coil Templated Acyl Transfer

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Peptide-PAINT Super-Resolution Imaging Using Transient Coiled Coil Interactions

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VIPERnano: Improved Live Cell Intracellular Protein Tracking

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Time-Resolved Tracking of Separately Internalized Neuropeptide Y2 Receptors by Two-Color Pulse-Chase

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In Situ Quenching of Trialkylphosphine Reducing Agents Using Water-Soluble PEG-Azides Improves Maleimide Conjugation to Proteins

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Short Peptide Tag for Covalent Protein Labeling Based on Coiled Coils

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Efficient Site-Specific Labeling of Proteins via Cysteines

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A Heterodimerizing Leucine Zipper Coiled Coil System for Examining the Specificity of a Position Interactions: Amino Acids I, V, L, N, A, and K

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Real-Time Monitoring of the Interactions of Two-Stranded de Novo Designed Coiled-Coils: Effect of Chain Length on the Kinetic and Thermodynamic Constants of Binding

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HaloTag: A Novel Protein Labeling Technology for Cell Imaging and Protein Analysis

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Coiled-Coil Tag−Probe System for Quick Labeling of Membrane Receptors in Living Cells

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A Synthetic Coiled-Coil Interactome Provides Heterospecific Modules for Molecular Engineering

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SYNZIP Protein Interaction Toolbox: in Vitro and in Vivo Specifications of Heterospecific Coiled-Coil Interaction Domains

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A general method for the covalent labeling of fusion proteins with small molecules in vivo

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Immunolabeling artifacts and the need for live-cell imaging

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A proposal for validation of antibodies

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Buried polar residues and structural specificity in the GCN4 leucine zipper

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A tunable orthogonal coiled-coil interaction toolbox for engineering mammalian cells

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Coiled-coil heterodimers with increased stability for cellular regulation and sensing SARS-CoV-2 spike protein-mediated cell fusion

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Peptide-tags for site-specific protein labelling in vitro and in vivo

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Tools and methods for circular dichroism spectroscopy of proteins: a tutorial review

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Small fluorescence-activating and absorption-shifting tag for tunable protein imaging in vivo

inferredcites →https://doi.org/10.1073/pnas.1808626115openalex-snapshot

VIPER is a genetically encoded peptide tag for fluorescence and electron microscopy

inferredcites →https://doi.org/10.1073/pnas.94.8.3673openalex-snapshot

Buried asparagines determine the dimerization specificities of leucine zipper mutants

inferredcites →https://doi.org/10.1074/jbc.m204257200openalex-snapshot

Designing Heterodimeric Two-stranded α-Helical Coiled-coils

inferredcites →https://doi.org/10.1074/mcp.m500279-mcp200openalex-snapshot

A Human Protein Atlas for Normal and Cancer Tissues Based on Antibody Proteomics

inferredcites →https://doi.org/10.1083/jcb.105.1.207openalex-snapshot

Functional expression of the human transferrin receptor cDNA in Chinese hamster ovary cells deficient in endogenous transferrin receptor.

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Fluorescent Proteins in Cellular Organelles: Serious Pitfalls and Some Solutions

inferredcites →https://doi.org/10.1110/ps.39401openalex-snapshot

Designed heterodimerizing leucine zippers with a ranger of pIs and stabilities up to 10−15 M

inferredcites →https://doi.org/10.1126/science.1948029openalex-snapshot

X-Ray Structure of the GCN4 Leucine Zipper, a Two-Stranded, Parallel Coiled Coil

inferredcites →https://doi.org/10.1126/science.281.5374.269openalex-snapshot

Specific Covalent Labeling of Recombinant Protein Molecules Inside Live Cells

inferredcites →https://doi.org/10.1126/science.8303295openalex-snapshot

Green Fluorescent Protein as a Marker for Gene Expression

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The Molecular Probes handbook. A guide to fluorescent probes and labeling technologies

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Generation of CoilR Probe Peptides for VIPER-labeling of Cellular Proteins

inferredcites →https://doi.org/10.21769/bioprotoc.3413openalex-snapshot

Implementing VIPER for Imaging Cellular Proteins by Fluorescence Microscopy

inferredcites →https://doi.org/10.21769/bioprotoc.3414openalex-snapshot

Imaging VIPER-labeled Cellular Proteins by Correlative Light and Electron Microscopy

inferredcites →https://doi.org/10.3390/ijms18071473openalex-snapshot

Fluorogenic Labeling Strategies for Biological Imaging

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How to measure and evaluate binding affinities

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/pharmacia.73.e201020zenodo-depositor-declared

Styryl hemicyanine dyes with benzo[d]thiazolium and substituted N-phenylpiperazine end groups binding biological macromolecules

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Hybrid Small-Molecule/Protein Fluorescent Probes

inferred← citeshttps://doi.org/10.1039/d4cs00094copenalex-snapshot

Selective fluorescent labeling of cellular proteins and its biological applications

inferred← citeshttps://doi.org/10.1039/d4sc05090hopenalex-snapshot

Multiplexed no-wash cellular imaging using BenzoTag, an evolved self-labeling protein

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BenzoHTag, a fluorogenic self-labeling protein developed using molecular evolution

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