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Widespread Pig Farming Practice Linked to Shifts in Skin Microbiomes and Disease in Pond-Breeding Amphibians

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Grow‐out Systems ‐ Polyculture and Integrated Culture
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A pesticide paradox: fungicides indirectly increase fungal infections
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The interactive effect of an emerging infectious disease and an emerging contaminant on Woodhouse's toad (Anaxyrus woodhousii) tadpoles
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The interactive effects of chytrid fungus, pesticides, and exposure timing on gray treefrog (Hyla versicolor) larvae
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Acute toxicity tests and meta-analysis identify gaps in tropical ecotoxicology for amphibians
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Effects of pesticide exposure and the amphibian chytrid fungus on gray treefrog ( Hyla chrysoscelis ) metamorphosis
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Effects of amphibian chytrid fungus exposure on American toads in the presence of an insecticide
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A long-term assessment of pesticide mixture effects on aquatic invertebrate communities
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The Impact of Pesticides on the Pathogen Batrachochytrium dendrobatidis Independent of Potential Hosts
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Environmental Effects of Heavy Spillage from a Destroyed Pesticide Store near Hargeisa (Somaliland) Assessed During the Dry Season, Using Reptiles and Amphibians as Bioindicators
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The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra)
inferredcites →https://doi.org/10.1007/s00248-016-0916-4openalex-snapshot
Greater Species Richness of Bacterial Skin Symbionts Better Suppresses the Amphibian Fungal Pathogen Batrachochytrium Dendrobatidis
inferredcites →https://doi.org/10.1007/s00248-017-0986-yopenalex-snapshot
Intraspecific Variation in the Skin-Associated Microbiome of a Terrestrial Salamander
inferredcites →https://doi.org/10.1007/s00248-019-01372-0openalex-snapshot
Ecological Correlates of Large-Scale Turnover in the Dominant Members of Pseudacris crucifer Skin Bacterial Communities
inferredcites →https://doi.org/10.1007/s00338-006-0131-8openalex-snapshot
Nutrient enrichment enhances black band disease progression in corals
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Parasitic and Infectious Disease Responses to Changing Global Nutrient Cycles
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Effects of agricultural pesticides on the health of Rana pipiens frogs sampled from the field
inferredcites →https://doi.org/10.1007/s13157-019-01207-1openalex-snapshot
Effects of Agricultural Pollutants on Stress Hormones and Viral Infection in Larval Salamanders
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Effects of industrial air pollution on wildlife
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Conservation evaluation and phylogenetic diversity
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Integrated fish-pig farming in India and Hungary
inferredcites →https://doi.org/10.1016/0044-8486(86)90268-1openalex-snapshot
Synergistic approach in carp polyculture with grass carp as a major component
inferredcites →https://doi.org/10.1016/b978-0-12-805247-1.00025-3openalex-snapshot
Impact of Agricultural Animals on the Environment
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Agricultural drainage ditches, their biological importance and functioning
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Microscopic Aquatic Predators Strongly Affect Infection Dynamics of a Globally Emerged Pathogen
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Amphibians and agricultural chemicals: Review of the risks in a complex environment
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Infectious Disease Ecology, Effects of Ecosystems in Disease and of Disease on Ecosystems
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Fungal—bacterial interactions: a mixed bag of mingling microbes
inferredcites →https://doi.org/10.1016/j.scitotenv.2012.09.017openalex-snapshot
Residues of organochlorine pesticides and polycyclic aromatic hydrocarbons in farm-raised livestock feeds and manures in Jiangsu, China
inferredcites →https://doi.org/10.1016/j.scitotenv.2012.11.045openalex-snapshot
Laboratory and field exposure of two species of juvenile amphibians to a glyphosate-based herbicide and Batrachochytrium dendrobatidis
inferredcites →https://doi.org/10.1016/s0043-1354(98)00506-5openalex-snapshot
Bioaccumulation of organochlorines in freshwater fish with different feeding modes cultured in treated wastewater
inferredcites →https://doi.org/10.1017/s0021859600051169openalex-snapshot
Sheep nutrition: II. Determinations of the amounts of grass consumed by sheep on pasturage of varying quality
inferredcites →https://doi.org/10.1021/acs.est.6b06055openalex-snapshot
Effect of Simultaneous Amphibian Exposure to Pesticides and an Emerging Fungal Pathogen,Batrachochytrium dendrobatidis
inferredcites →https://doi.org/10.1021/es401725sopenalex-snapshot
Nonmonotonic and Monotonic Effects of Pesticides on the Pathogenic Fungus Batrachochytrium dendrobatidis in Culture and on Tadpoles
inferredcites →https://doi.org/10.1023/a:1022406800631openalex-snapshot
Effect of pig dung on water quality and polyculture of carp species during winter and summer
inferredcites →https://doi.org/10.1038/ismej.2009.27openalex-snapshot
Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus
inferredcites →https://doi.org/10.1038/ismej.2010.133openalex-snapshot
UniFrac: an effective distance metric for microbial community comparison
inferredcites →https://doi.org/10.1038/ismej.2011.139openalex-snapshot
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/ismej.2013.16openalex-snapshot
Habitat degradation impacts black howler monkey ( Alouatta pigra ) gastrointestinal microbiomes
inferredcites →https://doi.org/10.1038/ismej.2013.200openalex-snapshot
Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)
inferredcites →https://doi.org/10.1038/ismej.2015.234openalex-snapshot
Skin bacterial diversity of Panamanian frogs is associated with host susceptibility and presence of Batrachochytrium dendrobatidis
inferredcites →https://doi.org/10.1038/nature07281openalex-snapshot
Agrochemicals increase trematode infections in a declining amphibian species
inferredcites →https://doi.org/10.1038/nature10650openalex-snapshot
Additive threats from pathogens, climate and land-use change for global amphibian diversity
inferredcites →https://doi.org/10.1038/ncomms13699openalex-snapshot
Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions
inferredcites →https://doi.org/10.1038/nmeth.2276openalex-snapshot
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/s41467-017-00119-0openalex-snapshot
Early-life disruption of amphibian microbiota decreases later-life resistance to parasites
inferredcites →https://doi.org/10.1038/s41467-018-02967-wopenalex-snapshot
Amphibian chytridiomycosis outbreak dynamics are linked with host skin bacterial community structure
inferredcites →https://doi.org/10.1038/s41587-019-0209-9openalex-snapshot
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
inferredcites →https://doi.org/10.1038/s41598-019-39076-7openalex-snapshot
Long fragments achieve lower base quality in Illumina paired-end sequencing
inferredcites →https://doi.org/10.1038/srep14862openalex-snapshot
Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation
inferredcites →https://doi.org/10.1046/j.1461-0248.2003.00544.xopenalex-snapshot
Nutrient enrichment can increase the severity of coral diseases
inferredcites →https://doi.org/10.1046/j.1523-1739.2002.01030.xopenalex-snapshot
Spatial Tests of the Pesticide Drift, Habitat Destruction, UV‐B, and Climate‐Change Hypotheses for California Amphibian Declines
inferredcites →https://doi.org/10.1073/pnas.0707763104openalex-snapshot
Aquatic eutrophication promotes pathogenic infection in amphibians
inferredcites →https://doi.org/10.1073/pnas.0912883107openalex-snapshot
Linking global climate and temperature variability to widespread amphibian declines putatively caused by disease
inferredcites →https://doi.org/10.1073/pnas.1109326109openalex-snapshot
Microbial diversity determines the invasion of soil by a bacterial pathogen
inferredcites →https://doi.org/10.1073/pnas.1412752111openalex-snapshot
The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection
inferredcites →https://doi.org/10.1093/bioinformatics/btv401openalex-snapshot
Error filtering, pair assembly and error correction for next-generation sequencing reads
inferredcites →https://doi.org/10.1093/icb/45.1.137openalex-snapshot
Antimicrobial Peptide Defenses in Amphibian Skin
inferredcites →https://doi.org/10.1093/icb/icr095openalex-snapshot
Amphibian Immune Defenses against Chytridiomycosis: Impacts of Changing Environments
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1098/rsos.140377openalex-snapshot
Seasonal and ontogenetic variation of skin microbial communities and relationships to natural disease dynamics in declining amphibians
inferredcites →https://doi.org/10.1098/rspb.2013.1502openalex-snapshot
Early-life exposure to a herbicide has enduring effects on pathogen-induced mortality
inferredcites →https://doi.org/10.1098/rspb.2017.0582openalex-snapshot
Land cover and forest connectivity alter the interactions among host, pathogen and skin microbiome
inferredcites →https://doi.org/10.1098/rspb.2017.1176openalex-snapshot
Cryptic disease-induced mortality may cause host extinction in an apparently stable host–parasite system
inferredcites →https://doi.org/10.1098/rspb.2018.0758openalex-snapshot
Disruption of skin microbiota contributes to salamander disease
inferredcites →https://doi.org/10.1111/1574-6941.12314openalex-snapshot
Similarity and differentiation between bacteria associated with skin of salamanders (Plethodon jordani) and free-living assemblages
inferredcites →https://doi.org/10.1111/cobi.12073openalex-snapshot
Chytridiomycosis and Seasonal Mortality of Tropical Stream‐Associated Frogs 15 Years after Introduction of Batrachochytrium dendrobatidis
inferredcites →https://doi.org/10.1111/eva.12500openalex-snapshot
Evolved pesticide tolerance influences susceptibility to parasites in amphibians
inferredcites →https://doi.org/10.1111/fwb.12685openalex-snapshot
Effects of nutrient supplementation on host‐pathogen dynamics of the amphibian chytrid fungus: a community approach
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High temperature enhances host pathology in a snail–trematode system: possible consequences of climate change for the emergence of disease
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The effects of multiple stressors on wetland communities: pesticides, pathogens and competing amphibians
inferredcites →https://doi.org/10.1111/j.1461-0248.2008.01250.xopenalex-snapshot
Global change and species interactions in terrestrial ecosystems
inferredcites →https://doi.org/10.1111/j.1523-1739.2006.00616.xopenalex-snapshot
Biogeographic Biases in Research and Their Consequences for Linking Amphibian Declines to Pollution
inferredcites →https://doi.org/10.1111/j.1523-1739.2010.01506.xopenalex-snapshot
Effects of Amphibian Chytrid Fungus on Individual Survival Probability in Wild Boreal Toads
inferredcites →https://doi.org/10.1111/j.1749-6632.2010.05454.xopenalex-snapshot
The effects of anthropogenic global changes on immune functions and disease resistance
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/mec.12510openalex-snapshot
The amphibian skin‐associated microbiome across species, space and life history stages
inferredcites →https://doi.org/10.1111/mec.13135openalex-snapshot
Phylogenetic distribution of symbiotic bacteria from Panamanian amphibians that inhibit growth of the lethal fungal pathogen Batrachochytrium dendrobatidis
inferredcites →https://doi.org/10.11118/actaun201260030117openalex-snapshot
Impact of fish pond manuring on microbial water quality
inferredcites →https://doi.org/10.1126/science.277.5325.494openalex-snapshot
Human Domination of Earth's Ecosystems
inferredcites →https://doi.org/10.1126/science.aav0379openalex-snapshot
Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
inferredcites →https://doi.org/10.1128/aem.01294-09openalex-snapshot
The Bacterially Produced Metabolite Violacein Is Associated with Survival of Amphibians Infected with a Lethal Fungus
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/aem.71.12.8228-8235.2005openalex-snapshot
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
inferredcites →https://doi.org/10.1128/msystems.00191-16openalex-snapshot
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
inferredcites →https://doi.org/10.1186/s12866-016-0660-4openalex-snapshot
Changes of diet and dominant intestinal microbes in farmland frogs
inferredcites →https://doi.org/10.1186/s40168-018-0470-zopenalex-snapshot
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
inferredcites →https://doi.org/10.1201/b18547openalex-snapshot
Biology and Ecology of Carp
inferredcites →https://doi.org/10.1242/jeb.040865openalex-snapshot
The cause of global amphibian declines: a developmental endocrinologist's perspective
inferredcites →https://doi.org/10.1289/ehp.8051openalex-snapshot
Pesticide Mixtures, Endocrine Disruption, and Amphibian Declines: Are We Underestimating the Impact?
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0010957openalex-snapshot
Cutaneous Bacteria of the Redback Salamander Prevent Morbidity Associated with a Lethal Disease
inferredcites →https://doi.org/10.1371/journal.pone.0043573openalex-snapshot
Unlikely Remedy: Fungicide Clears Infection from Pathogenic Fungus in Larval Southern Leopard Frogs (Lithobates sphenocephalus)
inferredcites →https://doi.org/10.1371/journal.pone.0044832openalex-snapshot
Surviving Chytridiomycosis: Differential Anti-Batrachochytrium dendrobatidis Activity in Bacterial Isolates from Three Lowland Species of Atelopus
inferredcites →https://doi.org/10.1371/journal.pone.0132832openalex-snapshot
Effects of Pesticide Mixtures on Host-Pathogen Dynamics of the Amphibian Chytrid Fungus
inferredcites →https://doi.org/10.1371/journal.pone.0139848openalex-snapshot
Community Structure and Function of Amphibian Skin Microbes: An Experiment with Bullfrogs Exposed to a Chytrid Fungus
inferredcites →https://doi.org/10.1590/s1984-29612015013openalex-snapshot
Protozoan infections in farmed fish from Brazil: diagnosis and pathogenesis
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Quantitative study of Trichodina heterodentata (Ciliophora: Mobilia) infrapopulations infesting tadpoles of a Brazilian endemic toad Rhinella pombali (Anura: Bufonidae)
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How Time of Exposure to the Amphibian Chytrid Fungus Affects Hyla chrysoscelis in the Presence of an Insecticide 1
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PARASITE (RIBEIROIA ONDATRAE) INFECTION LINKED TO AMPHIBIAN MALFORMATIONS IN THE WESTERN UNITED STATES
inferredcites →https://doi.org/10.1890/02-5305openalex-snapshot
AGRICULTURAL PONDS SUPPORT AMPHIBIAN POPULATIONS
inferredcites →https://doi.org/10.1890/08-0633.1openalex-snapshot
Linking environmental nutrient enrichment and disease emergence in humans and wildlife
inferredcites →https://doi.org/10.1890/10-2319.1openalex-snapshot
Effects of chytrid fungus and a glyphosate-based herbicide on survival and growth of wood frogs (Lithobates sylvaticus)
inferredcites →https://doi.org/10.1890/14-1837.1openalex-snapshot
Antifungal isolates database of amphibian skin‐associated bacteria and function against emerging fungal pathogens
inferredcites →https://doi.org/10.1897/05-260r.1openalex-snapshot
Effects of atrazine and iridovirus infection on survival and life-history traits of the long-toed salamander ( Ambystoma macrodactylum )
inferredcites →https://doi.org/10.3354/dao060141openalex-snapshot
Rapid quantitative detection of chytridiomycosis (Batrachochytrium dendrobatidis) in amphibian samples using real-time Taqman PCR assay
inferredcites →https://doi.org/10.3354/dao073175openalex-snapshot
Diagnostic assays and sampling protocols for the detection of Batrachochytrium dendrobatidis
inferredcites →https://doi.org/10.3354/meps314119openalex-snapshot
Role of elevated organic carbon levels and microbial activity in coral mortality
inferredcites →https://doi.org/10.3389/fmicb.2018.00487openalex-snapshot
Host and Aquatic Environment Shape the Amphibian Skin Microbiome but Effects on Downstream Resistance to the Pathogen Batrachochytrium dendrobatidis Are Variable
inferredcites →https://doi.org/10.3389/fmicb.2018.00748openalex-snapshot
Pesticides Could Alter Amphibian Skin Microbiomes and the Effects of Batrachochytrium dendrobatidis
inferredcites →https://doi.org/10.3389/fmicb.2019.00106openalex-snapshot
Function of Biohydrogen Metabolism and Related Microbial Communities in Environmental Bioremediation
inferredcites →https://doi.org/10.4025/actasciagron.v33i1.3129openalex-snapshot
Adsorção de fósforo em dez solos do Estado de Pernambuco e suas relações com parâmetros físicos e químicos
inferredcites →https://doi.org/10.5194/hess-11-1633-2007openalex-snapshot
Updated world map of the Köppen-Geiger climate classification
inferredcites →https://doi.org/10.5860/choice.32-0304openalex-snapshot
Measuring and monitoring biological diversity: standard methods for amphibians
inferredcites →https://doi.org/10.5860/choice.39-2533openalex-snapshot
Encyclopedia of aquaculture

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Trait-environment Relationship in Tadpole Communities of the Southern Atlantic Forest.
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Post‐metamorphic growth partially compensates for the effects of climate‐driven stressors on juvenile frog performance
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The impact of aquaculture system on the microbiome and gut metabolome of juvenile Chinese softshell turtle ( Pelodiscus sinensis )
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Habitat Disturbance Linked with Host Microbiome Dispersion and Bd Dynamics in Temperate Amphibians
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Environmental and Anthropogenic Factors Shape the Skin Bacterial Communities of a Semi-Arid Amphibian Species
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Seasonal Habitat Preferences and Response to Water Quality Parameters of Tree Frog Species in a Neotropical Wetland
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Signatures of repeated genomic selection associated with human-modified landscapes in genetically independent populations of Rhinella horribilis
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Amphibian tolerance to arsenic: microbiome-mediated insights
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Linking microbiome and stress hormone responses in wild tropical treefrogs across continuous and fragmented forests
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The role of artificial ponds for anuran diversity in managed areas of the Atlantic Forest
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From the organismal to biosphere levels: environmental impacts on the amphibian microbiota
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Association between land use and composition of amphibian species in temperate Brazilian forest remnants
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The impacts of water quality on the amphibian chytrid fungal pathogen: A systematic review
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Habitat split as a driver of disease in amphibians
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Signatures of functional bacteriome structure in a tropical direct-developing amphibian species
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Low microbiome diversity in threatened amphibians from two biodiversity hotspots
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From genes to ecosystems: a synthesis of amphibian biodiversity research in Brazil
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The Potential Effect of Oral Bacterial Community in Melanophryniscus Admirabilis (Admirable Red-Belly Toads) Conservation
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Nutrient enrichment alters the microbiome and increases chytrid load in the American bullfrog Lithobates catesbeianus
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Infection dynamics of Batrachochytrium dendrobatidis in subtropical amphibian communities
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Protecting Japanese giant salamanders (Andrias japonicus) in the Nawa River Basin, Japan: policy recommendations addressing water pollution and waterway disruption
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Influence of landscape on the presence of Batrachochytrium dendrobatidis and Ranavirus in tadpoles in the southern Atlantic Forest of Brazil
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Ecological Factors and Anthropogenic Disturbance May Restructure the Skin Microbiota of Maoershan Hynobiids (Hynobius maoershanensis)
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The Oral Bacterial Community in Melanophryniscus admirabilis (Admirable Red-Belly Toads): Implications for Conservation
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Pandemie wśród płazów
inferred← citeshttps://doi.org/10.55524/ijirem.2022.9.1.57openalex-snapshot
An Analysis of Iron as an essential nutrient for Skin
inferred← citeshttps://doi.org/10.6084/m9.figshare.20025011openalex-snapshot
Additional file 1 of Signatures of functional bacteriome structure in a tropical direct-developing amphibian species
inferred← citeshttps://doi.org/10.6084/m9.figshare.26558243openalex-snapshot
Additional file 1 of Low microbiome diversity in threatened amphibians from two biodiversity hotspots
inferred← citeshttps://doi.org/10.6084/m9.figshare.26558246openalex-snapshot
Additional file 2 of Low microbiome diversity in threatened amphibians from two biodiversity hotspots
inferred← citeshttps://doi.org/10.70675/b6c93f38z5c3ez4ff7za0a1z7d91c3010f33openalex-snapshot
Le microbiome de la peau des amphibiens dans la pyramide des maladies
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