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Metagenomics Unravels Differential Microbiome Composition and Metabolic Potential in Rapid Sand Filters Purifying Surface Water Versus Groundwater

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Outgoing claims: the papers this work cites, builds on, or argues with.

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inferredcites →https://doi.org/10.1016/j.watres.2011.05.005openalex-snapshot
Assessment of nitrification in groundwater filters for drinking water production by qPCR and activity measurement
inferredcites →https://doi.org/10.1016/j.watres.2014.03.013openalex-snapshot
Catalytic oxidation of manganese(II) by multicopper oxidase CueO and characterization of the biogenic Mn oxide
inferredcites →https://doi.org/10.1016/j.watres.2014.05.035openalex-snapshot
Abundance and composition of indigenous bacterial communities in a multi-step biofiltration-based drinking water treatment plant
inferredcites →https://doi.org/10.1016/j.watres.2014.07.001openalex-snapshot
Effects of dynamic operating conditions on nitrification in biological rapid sand filters for drinking water treatment
inferredcites →https://doi.org/10.1016/j.watres.2014.11.019openalex-snapshot
Biological and physico-chemical formation of Birnessite during the ripening of manganese removal filters
inferredcites →https://doi.org/10.1016/j.watres.2016.03.068openalex-snapshot
The role of biogenic Fe-Mn oxides formed in situ for arsenic oxidation and adsorption in aquatic ecosystems
inferredcites →https://doi.org/10.1016/j.watres.2016.04.073openalex-snapshot
Depth investigation of rapid sand filters for drinking water production reveals strong stratification in nitrification biokinetic behavior
inferredcites →https://doi.org/10.1016/j.watres.2016.09.040openalex-snapshot
Treatment of groundwater containing Mn(II), Fe(II), As(III) and Sb(III) by bioaugmented quartz-sand filters
inferredcites →https://doi.org/10.1016/j.watres.2016.12.041openalex-snapshot
As(III) oxidation by MnO2 during groundwater treatment
inferredcites →https://doi.org/10.1016/j.watres.2017.09.042openalex-snapshot
Medium shapes the microbial community of water filters with implications for effluent quality
inferredcites →https://doi.org/10.1016/j.watres.2017.09.048openalex-snapshot
Biodegradable organic matter and rapid-rate biofilter performance: A review
inferredcites →https://doi.org/10.1016/j.watres.2017.10.023openalex-snapshot
Density and distribution of nitrifying guilds in rapid sand filters for drinking water production: Dominance of Nitrospira spp.
inferredcites →https://doi.org/10.1016/j.watres.2017.10.054openalex-snapshot
Metagenomic characterization of biofilter microbial communities in a full-scale drinking water treatment plant
inferredcites →https://doi.org/10.1016/j.watres.2017.10.073openalex-snapshot
Evidence of co-metabolic bentazone transformation by methanotrophic enrichment from a groundwater-fed rapid sand filter
inferredcites →https://doi.org/10.1016/j.watres.2017.11.009openalex-snapshot
Bioaugmentation of rapid sand filters by microbiome priming with a nitrifying consortium will optimize production of drinking water from groundwater
inferredcites →https://doi.org/10.1016/j.watres.2017.12.061openalex-snapshot
Remediation of incomplete nitrification and capacity increase of biofilters at different drinking water treatment plants through copper dosing
inferredcites →https://doi.org/10.1016/j.ymeth.2016.02.020openalex-snapshot
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
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Comparative measurements of microbial activity in drinking water biofilters
inferredcites →https://doi.org/10.1017/cbo9780511615146openalex-snapshot
Multivariate Analysis of Ecological Data using CANOCO
inferredcites →https://doi.org/10.1021/es302042topenalex-snapshot
Bacterial Community Structure in the Drinking Water Microbiome Is Governed by Filtration Processes
inferredcites →https://doi.org/10.1021/es5046452openalex-snapshot
Groundwater Chemistry Determines the Prokaryotic Community Structure of Waterworks Sand Filters
inferredcites →https://doi.org/10.1021/es9027327openalex-snapshot
Diclofenac Oxidation by Biogenic Manganese Oxides
inferredcites →https://doi.org/10.1038/ismej.2016.16openalex-snapshot
Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters
inferredcites →https://doi.org/10.1038/ismej.2016.63openalex-snapshot
Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology ofNitrospiraspp.
inferredcites →https://doi.org/10.1038/ismej.2017.126openalex-snapshot
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
inferredcites →https://doi.org/10.1038/nature16459openalex-snapshot
Complete nitrification by a single microorganism
inferredcites →https://doi.org/10.1038/nature16461openalex-snapshot
Complete nitrification by Nitrospira bacteria
inferredcites →https://doi.org/10.1038/nbt.3519openalex-snapshot
Near-optimal probabilistic RNA-seq quantification
inferredcites →https://doi.org/10.1038/nbt.4229openalex-snapshot
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu494openalex-snapshot
STAMP: statistical analysis of taxonomic and functional profiles
inferredcites →https://doi.org/10.1093/bioinformatics/bty741openalex-snapshot
NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes
inferredcites →https://doi.org/10.1099/00221287-137-11-2657openalex-snapshot
Autotrophic and mixotrophic growth of Gallionella ferruginea
inferredcites →https://doi.org/10.1111/1462-2920.14033openalex-snapshot
Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater‐fed rapid sand filter communities
inferredcites →https://doi.org/10.1111/j.1462-2920.2006.01216.xopenalex-snapshot
A multicopper oxidase is essential for manganese oxidation and laccase‐like activity in Pedomicrobium sp. ACM 3067
inferredcites →https://doi.org/10.1111/j.1654-1103.2003.tb02228.xopenalex-snapshot
VEGAN, a package of R functions for community ecology
inferredcites →https://doi.org/10.1128/aem.00046-16openalex-snapshot
Identification of a Third Mn(II) Oxidase Enzyme in Pseudomonas putida GB-1
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1186/1471-2105-11-119openalex-snapshot
Prodigal: prokaryotic gene recognition and translation initiation site identification
inferredcites →https://doi.org/10.1186/s40168-018-0541-1openalex-snapshot
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
inferredcites →https://doi.org/10.1371/journal.pcbi.1004957openalex-snapshot
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pone.0061011openalex-snapshot
Integrated Metagenomic and Physiochemical Analyses to Evaluate the Potential Role of Microbes in the Sand Filter of a Drinking Water Treatment System
inferredcites →https://doi.org/10.2166/aqua.2010.052openalex-snapshot
Assessing biological stability of drinking water without disinfectant residuals in a full-scale water supply system
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Neutrophilic iron-oxidizing bacteria: occurrence and relevance in biological drinking water treatment
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R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3389/fmicb.2018.02808openalex-snapshot
Diversity of Iron Oxidizers in Groundwater-Fed Rapid Sand Filters: Evidence of Fe(II)-Dependent Growth by Curvibacter and Undibacterium spp.
inferredcites →https://doi.org/10.5860/choice.33-6312openalex-snapshot
Aquatic chemistry: chemical equilibria and rates in natural waters

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Improved permeability in ceramsite@powdered activated carbon (PAC)-MnOx coupled gravity-driven ceramic membrane (GDCM) for manganese and ammonia nitrogen removal with intermittent short-term vertical aeration
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Filtration of polystyrene nanoplastics with different functional groups by natural mineral materials: Performance and mechanisms
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Microbial communities contribute to the elimination of As, Fe, Mn, and NH4+ from groundwater in household sand filters
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Microbial ecology of drinking water from source to tap
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Impact of Harmful Algal Bloom Severity on Bacterial Communities in a Full-Scale Biological Filtration System for Drinking Water Treatment
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Evolution of biogenic Fe-Mn binary oxide physicochemical properties during biofilter start-up for sustainable urban groundwater treatment
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Growth inhibition of Microcystis aeruginosa by sand-filter prevalent manganese-oxidizing bacterium
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Microbiome re-assembly enhances manganese and ammonium co-removal in sand biofilters
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Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in two sequential rapid sand filters
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Manganese oxides in Phragmites rhizosphere accelerates ammonia oxidation in constructed wetlands
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Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue
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Ozone and Fenton oxidation affected the bacterial community and opportunistic pathogens in biofilms and effluents from GAC
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Exploring organic micropollutant biodegradation under dynamic substrate loading in rapid sand filters
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Comammox biogeography subject to anthropogenic interferences along a high-altitude river
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Comprehensive characterization of aerobic groundwater biotreatment media
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Meta-omics profiling of full-scale groundwater rapid sand filters explains stratification of iron, ammonium and manganese removals
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The abiotic removal of organic micropollutants with iron and manganese oxides in rapid sand filters for groundwater treatment
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Narrow host range phages infect essential bacteria for water purification reactions in groundwater-fed rapid sand filters
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Effects of treatments and distribution on microbiome and antibiotic resistome from source to tap water in three Chinese geographical regions based on metagenome assembly
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Influence of filter backwashing on iron, manganese, and ammonium removal in dual-media rapid sand filters used for drinking water production
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Biological methane removal by groundwater trickling biofiltration for emissions reduction
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Identifying the Active Phenanthrene Degraders and Characterizing Their Metabolic Activities at the Single-Cell Level by the Combination of Magnetic-Nanoparticle-Mediated Isolation, Stable-Isotope Probing, and Raman-Activated Cell Sorting (MMI–SIP–RACS)
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Initial Formation and Accumulation of Manganese Deposits in Drinking Water Pipes: Investigating the Role of Microbial-Mediated Processes
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In Situ Discrimination and Cultivation of Active Degraders in Soils by Genome-Directed Cultivation Assisted by SIP-Raman-Activated Cell Sorting
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Bridging Dissolved Organic Matter Reactivity to Ozonation Catalysts for Cu@Al 2 O 3 from the Molecular Level by Machine Learning
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Small-Portion Replacement with MnO x Media Promotes Biofilm Development, Leading to Rapid Biological Maturation and Sustained Mn(II) Removal in Sand Filtration
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Dissipation of Sulfonamides in Soil Emphasizing Taxonomy and Function of Microbiomes by Metagenomic Analysis
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Field and Laboratory Evidence for Manganese Redox Cycling Controlling Iron and Arsenic Retention in Household Sand Filters
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Impact of Redox Potential on Biofilms and Water Quality in Managed Aquifer Recharge Lab System
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Denitrification is a community trait with partial pathways dominating across microbial genomes and biomes
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Microbial acidification by N, S, Fe and Mn oxidation as a key mechanism for deterioration of subsea tunnel sprayed concrete
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Ammonia-oxidizing microbes and biological ammonia removal in drinking water treatment
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Understanding the impact of different source water types on the biofilm characteristics and microbial communities of manganese removing biofilters
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Acceleration of sand filtration start-up for manganese-containing groundwater treatment: microbial-mediated autocatalytic oxidation of manganese oxides
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Production of birnessite-type manganese oxides by biofilms from oxygen-supplemented biological activated carbon (BAC) filters
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Microbial dynamics at different stages of drinking water treatment systems
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Harnessing biodegradation potential of rapid sand filtration for organic micropollutant removal from drinking water: A review
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Niche creation improves bioaugmentation of an organic micropollutant degrader in oligotrophic waters
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Evolutionary ecology of natural comammox Nitrospira populations
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Boundary conditions for exploiting the cooperation of Aminobacter niigataensis MSH1 with Piscinibacter sp. K169 to support 2,6-dichlorobenzamide biodegradation in sand filters for drinking water treatment: role of cell density and organic carbon
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Evolutionary Ecology of Natural Comammox Nitrospira Populations
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Groundwater Quality and Public Health
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Identification of potential microbial risk factors associated with fecal indicator exceedances at recreational beaches
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地下水质与健康研究进展
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Nitrogen-metabolising Microorganism Analysis in Rapid Sand Filters From Drinking Water Treatment Plant by Culturing and Metagenomics
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Microbial Community Succession and Assembly of Drinking Water Biological Fluidized Bed in the Cryogenic Super-Oxygen-Enriched Environment: A Study Based on a Full-Scale Drinking Treatment Plant
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Adverse Effects of Permanganate Pretreatment on Ammonium Oxidation Activity in Drinking Water Biofilter
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Differential utilisation of dissolved organic matter compound fractions by different biofilter microbial communities
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Physicochemical and pathological assessment of groundwater quality from Sargodha, Pakistan using hybrid multi-layer slow sand filter: pre and post treatment analysis
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Microbial community analysis of sand filters used to treat mine water from a closed uranium mine
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Predictive modelling of a rapid stratified bed filter for turbidity removal from surface water
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1741059openalex-snapshot
Functional redundancy and niche complementarity maintain nitrification stability in rapid sand filters
inferred← citeshttps://doi.org/10.3390/jmse10020171openalex-snapshot
Metagenomic Insights into the Structure of Microbial Communities Involved in Nitrogen Cycling in Two Integrated Multitrophic Aquaculture (IMTA) Ponds
inferred← citeshttps://doi.org/10.3390/su17031102openalex-snapshot
Assessing the Efficiency of Phragmites australis in Wastewater Treatment as a Natural Approach to Water Quality Improvement
inferred← citeshttps://doi.org/10.6084/m9.figshare.25001613openalex-snapshot
Additional file 1 of Identification of potential microbial risk factors associated with fecal indicator exceedances at recreational beaches
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