On the public citation graph

Microscopic Understanding of the Effect of Ionic Liquid on Protein from Molecular Simulation Studies

https://doi.org/10.1021/acs.jpcb.0c02001

0 signed · 106 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-987x(199709)18:12<1463::aid-jcc4>3.0.co;2-hopenalex-snapshot

LINCS: A linear constraint solver for molecular simulations

inferredcites →https://doi.org/10.1002/(sici)1096-987x(199802)19:3<363::aid-jcc9>3.0.co;2-ropenalex-snapshot

Effect of available volumes on radial distribution functions

inferredcites →https://doi.org/10.1002/jcc.21224openalex-snapshot

P ACKMOL : A package for building initial configurations for molecular dynamics simulations

inferredcites →https://doi.org/10.1002/nme.558openalex-snapshot

Fast and robust Delaunay tessellation in periodic domains

inferredcites →https://doi.org/10.1002/prot.22927openalex-snapshot

Salt bridges: Geometrically specific, designable interactions

inferredcites →https://doi.org/10.1002/prot.24757openalex-snapshot

Molecular dynamics investigation of the ionic liquid/enzyme interface: Application to engineering enzyme surface charge

inferredcites →https://doi.org/10.1002/prot.340230412openalex-snapshot

Knowledge‐based protein secondary structure assignment

inferredcites →https://doi.org/10.1006/jmbi.2001.5154openalex-snapshot

Do water molecules mediate protein-DNA recognition? 1 1Edited by B. Honig

inferredcites →https://doi.org/10.1016/0167-7322(88)80022-9openalex-snapshot

Computer Simulation of Liquids

inferredcites →https://doi.org/10.1016/0263-7855(96)00018-5openalex-snapshot

VMD: Visual molecular dynamics

inferredcites →https://doi.org/10.1016/0378-1119(92)90385-3openalex-snapshot

Sequence of the murine α-lactalbumin-encoding cDNA: interspecies comparison of the coding frame and deduced preprotein

inferredcites →https://doi.org/10.1016/0730-725x(88)90413-4openalex-snapshot

Principles of nuclear magnetic resonance in one and two dimensions

inferredcites →https://doi.org/10.1016/j.bej.2015.10.024openalex-snapshot

Understanding the molecular behaviour of Renilla luciferase in imidazolium-based ionic liquids, a new model for the α/β fold collapse

inferredcites →https://doi.org/10.1016/j.bpj.2014.12.043openalex-snapshot

Comparison of Three Ionic Liquid-Tolerant Cellulases by Molecular Dynamics

inferredcites →https://doi.org/10.1016/j.enzmictec.2005.02.014openalex-snapshot

Ionic liquids: Green solvents for nonaqueous biocatalysis

inferredcites →https://doi.org/10.1016/j.jbiotec.2009.04.011openalex-snapshot

Hofmeister effects: an explanation for the impact of ionic liquids on biocatalysis

inferredcites →https://doi.org/10.1016/j.jmgm.2015.06.016openalex-snapshot

Effects of imidazolium-based ionic liquids on the stability and dynamics of gramicidin A and lipid bilayers at different salt concentrations

inferredcites →https://doi.org/10.1016/j.jphotobiol.2014.03.007openalex-snapshot

Deciphering the interaction of a model transport protein with a prototypical imidazolium room temperature ionic liquid: Effect on the conformation and activity of the protein

inferredcites →https://doi.org/10.1016/j.softx.2015.06.001openalex-snapshot

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

inferredcites →https://doi.org/10.1016/s0006-3495(01)75784-0openalex-snapshot

Application of the Stretched Exponential Function to Fluorescence Lifetime Imaging

inferredcites →https://doi.org/10.1016/s0021-9258(18)93319-3openalex-snapshot

The Hormonal Control of Lactose Synthetase in the Developing Mouse Mammary Gland

inferredcites →https://doi.org/10.1016/s0021-9258(19)36512-3openalex-snapshot

Alpha-lactalbumin possesses a distinct zinc binding site.

inferredcites →https://doi.org/10.1016/s0065-3233(08)60190-4openalex-snapshot

Linked Functions and Reciprocal Effects in Hemoglobin: A Second Look

inferredcites →https://doi.org/10.1016/s0958-1669(02)00353-1openalex-snapshot

Enzyme catalysis in ionic liquids

inferredcites →https://doi.org/10.1016/s0969-2126(96)00075-5openalex-snapshot

Crystal structures of guinea-pig, goat and bovine α-lactalbumin highlight the enhanced conformational flexibility of regions that are significant for its action in lactose synthase

inferredcites →https://doi.org/10.1021/acs.jpcb.6b05328openalex-snapshot

Ab Initio Force Fields for Imidazolium-Based Ionic Liquids

inferredcites →https://doi.org/10.1021/acs.jpcb.6b09410openalex-snapshot

Destabilization of Human Serum Albumin by Ionic Liquids Studied Using Enhanced Molecular Dynamics Simulations

inferredcites →https://doi.org/10.1021/cr050946xopenalex-snapshot

Biocatalysis in Ionic Liquids

inferredcites →https://doi.org/10.1021/cr2003773openalex-snapshot

Overview of the Stability of α-Chymotrypsin in Different Solvent Media

inferredcites →https://doi.org/10.1021/cs500978xopenalex-snapshot

NMR-Guided Rational Engineering of an Ionic-Liquid-Tolerant Lipase

inferredcites →https://doi.org/10.1021/ct600160zopenalex-snapshot

What NMR Relaxation Can Tell Us about the Internal Motion of an RNA Hairpin: A Molecular Dynamics Simulation Study

inferredcites →https://doi.org/10.1021/ct900009aopenalex-snapshot

Development of OPLS-AA Force Field Parameters for 68 Unique Ionic Liquids

inferredcites →https://doi.org/10.1021/ie101441sopenalex-snapshot

Thermophysical Properties of Pure Ionic Liquids: Review of Present Situation

inferredcites →https://doi.org/10.1021/ja00381a009openalex-snapshot

Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity

inferredcites →https://doi.org/10.1021/ja409820gopenalex-snapshot

Nanosecond Time Scale Motions in Proteins Revealed by High-Resolution NMR Relaxometry

inferredcites →https://doi.org/10.1021/ja9621760openalex-snapshot

Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids

inferredcites →https://doi.org/10.1021/jp0363996openalex-snapshot

Proteins in Mixed Solvents: A Molecular-Level Perspective

inferredcites →https://doi.org/10.1021/jp047480ropenalex-snapshot

Physicochemical Properties and Structures of Room Temperature Ionic Liquids. 1. Variation of Anionic Species

inferredcites →https://doi.org/10.1021/jp0766050openalex-snapshot

Protein Structure and Dynamics in Ionic Liquids. Insights from Molecular Dynamics Simulation Studies

inferredcites →https://doi.org/10.1021/jp105611bopenalex-snapshot

Characterization of the Influence of the Ionic Liquid 1-Butyl-3-methylimidazolium Chloride on the Structure and Thermal Stability of Green Fluorescent Protein

inferredcites →https://doi.org/10.1021/jp2100733openalex-snapshot

Interfacial Viscoelasticity of Myoglobin at Air/Water and Air/Solution Interfaces: Role of Folding and Clustering

inferredcites →https://doi.org/10.1021/jp3057064openalex-snapshot

High Ionic Liquid Concentration-Induced Structural Change of Protein in Aqueous Solution: A Case Study of Lysozyme

inferredcites →https://doi.org/10.1021/jp308443fopenalex-snapshot

Structural Basis for the Enhanced Stability of Protein Model Compounds and Peptide Backbone Unit in Ammonium Ionic Liquids

inferredcites →https://doi.org/10.1021/jp310198fopenalex-snapshot

Microviscosity-Induced Conformational Transition in β-Lactoglobulin in the Presence of an Ionic Liquid

inferredcites →https://doi.org/10.1021/jp312299dopenalex-snapshot

Structural and Dynamic Features of Candida rugosa Lipase 1 in Water, Octane, Toluene, and Ionic Liquids BMIM-PF6 and BMIM-NO3

inferredcites →https://doi.org/10.1021/jp404760wopenalex-snapshot

Mediating Electrostatic Binding of 1-Butyl-3-methylimidazolium Chloride to Enzyme Surfaces Improves Conformational Stability

inferredcites →https://doi.org/10.1021/jp405834nopenalex-snapshot

Ionic Liquid-Induced Formation of the α-Helical Structure of β-Lactoglobulin

inferredcites →https://doi.org/10.1021/jp500958ropenalex-snapshot

Evaluating the Strength of Salt Bridges: A Comparison of Current Biomolecular Force Fields

inferredcites →https://doi.org/10.1023/a:1011697609756openalex-snapshot

Over-stabilization of Candida antarctica lipase B by ionic liquids in ester synthesis

inferredcites →https://doi.org/10.1023/a:1015564608261openalex-snapshot

At low water activity α-chymotrypsin is more active in an ionic liquid than in non-ionic organic solvents

inferredcites →https://doi.org/10.1038/nm.2161openalex-snapshot

An autoimmune-mediated strategy for prophylactic breast cancer vaccination

inferredcites →https://doi.org/10.1039/b401304mopenalex-snapshot

Fluorescence studies of protein thermostability in ionic liquidsElectronic supplementary information (ESI) available: synthesis of [C4mpy][Tf2N]. See http://www.rsc.org/suppdata/cc/b4/b401304m/

inferredcites →https://doi.org/10.1039/b504681popenalex-snapshot

Molecular dynamics simulation of room-temperature ionic liquid mixture of [bmim][BF4] and acetonitrile by a refined force field

inferredcites →https://doi.org/10.1039/c0cp02487bopenalex-snapshot

Solvation studies of a zinc finger protein in hydrated ionic liquids

inferredcites →https://doi.org/10.1039/c1gc15691hopenalex-snapshot

Green fluorescent protein as a screen for enzymatic activity in ionic liquid–aqueous systems for in situhydrolysis of lignocellulose

inferredcites →https://doi.org/10.1039/c3cp53395fopenalex-snapshot

Protein destabilisation in ionic liquids: the role of preferential interactions in denaturation

inferredcites →https://doi.org/10.1039/c4cp04060kopenalex-snapshot

Mechanisms of hydrogen bond formation between ionic liquids and cellulose and the influence of water content

inferredcites →https://doi.org/10.1039/c6me00047aopenalex-snapshot

Kinetics and mechanism of ionic-liquid induced protein unfolding: application to the model protein HP35

inferredcites →https://doi.org/10.1039/c7nj02900dopenalex-snapshot

A spectroscopic and molecular dynamics simulation approach towards the stabilizing effect of ammonium-based ionic liquids on bovine serum albumin

inferredcites →https://doi.org/10.1042/bj1850227openalex-snapshot

Purification and characterization of mouse α-lactalbumin and preparation of its antibody

inferredcites →https://doi.org/10.1063/1.2408420openalex-snapshot

Canonical sampling through velocity rescaling

inferredcites →https://doi.org/10.1063/1.3127782openalex-snapshot

On the collective network of ionic liquid/water mixtures. III. Structural analysis of ionic liquids on the basis of Voronoi decomposition

inferredcites →https://doi.org/10.1063/1.328693openalex-snapshot

Polymorphic transitions in single crystals: A new molecular dynamics method

inferredcites →https://doi.org/10.1063/1.445869openalex-snapshot

Comparison of simple potential functions for simulating liquid water

inferredcites →https://doi.org/10.1063/1.448118openalex-snapshot

Molecular dynamics with coupling to an external bath

inferredcites →https://doi.org/10.1063/1.464397openalex-snapshot

Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems

inferredcites →https://doi.org/10.1063/1.470648openalex-snapshot

Constant pressure molecular dynamics simulation: The Langevin piston method

inferredcites →https://doi.org/10.1063/1.4821588openalex-snapshot

On the influence of hydrated imidazolium-based ionic liquid on protein structure stability: A molecular dynamics simulation study

inferredcites →https://doi.org/10.1063/1.4931974openalex-snapshot

Ionic liquid induced dehydration and domain closure in lysozyme: FCS and MD simulation

inferredcites →https://doi.org/10.1073/pnas.122225399openalex-snapshot

Protein-solvent preferential interactions, protein hydration, and the modulation of biochemical reactions by solvent components

inferredcites →https://doi.org/10.1073/pnas.92.7.2835openalex-snapshot

Lactation is disrupted by alpha-lactalbumin deficiency and can be restored by human alpha-lactalbumin gene replacement in mice.

inferredcites →https://doi.org/10.1103/physreve.58.r1226openalex-snapshot

Relaxation dynamics in ultrathin polymer films

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4637708openalex-extracted

Hydrolysis of Refined Palm Olein to Fatty Acids Using High Strength Fg Eversa® Transform 2.0 Along with Co2-Based Alkyl Carbamate Ionic Liquids

inferred← citeshttps://doi.org/10.1007/s12551-024-01261-yopenalex-snapshot

Ionic liquids as stabilisers of therapeutic protein formulations: a review of insulin and monoclonal antibodies

inferred← citeshttps://doi.org/10.1016/j.cogsc.2020.100406openalex-snapshot

Facilitating enzymatic reactions by using ionic liquids: A mini review

inferred← citeshttps://doi.org/10.1016/j.colsurfb.2025.115209openalex-snapshot

Alkyl-tuned hydrophobic assistance boosts hydrogen bond-directed solvation regulation of α-helix magainin in choline carboxylate ionic liquids

inferred← citeshttps://doi.org/10.1016/j.enzmictec.2023.110392openalex-snapshot

A green pathway for lignin valorization: Enzymatic lignin depolymerization in biocompatible ionic liquids and deep eutectic solvents

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2022.03.100openalex-snapshot

Enhanced structural stability of insulin aspart in cholinium aminoate ionic liquids

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2023.128901openalex-snapshot

Exploration of the structural mechanism of hydrogen (H2)-promoted horseradish peroxidase (HRP) activity via multiple spectroscopic and molecular dynamics simulation techniques

inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.141187openalex-snapshot

Affordable CO2-derived alkyl carbamate ionic liquids boosting enzymatic production of renewable hydrocarbon fuels via Chlorella variabilis NC64A fatty acid photodecarboxylase (CFAP)

inferred← citeshttps://doi.org/10.1016/j.jmgm.2023.108582openalex-snapshot

Temperature dependent molecular dynamics simulation study to understand the stabilizing effect of NADES on the protein β -Lactoglobulin

inferred← citeshttps://doi.org/10.1016/j.molliq.2022.120779openalex-snapshot

Computational investigation of conformational fluctuations of Aβ42 monomers in aqueous ionic liquid mixtures

inferred← citeshttps://doi.org/10.1016/j.rechem.2026.103328openalex-snapshot

Recent progress of ionic liquids for life science applications: A critical review

inferred← citeshttps://doi.org/10.1021/acs.jcim.2c01310openalex-snapshot

Impact of an Ionic Liquid on Amino Acid Side Chains: A Perspective from Molecular Simulation Studies

inferred← citeshttps://doi.org/10.1021/acs.jpcb.1c04167openalex-snapshot

Contrasting Effects of Ionic Liquids of Varying Degree of Hydrophilicity on the Conformational and Interfacial Properties of a Globular Protein

inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c03223openalex-snapshot

Counteraction Effects of Ammonium-Based Ionic Liquids on Urea-Induced Denaturation of α-Lactalbumin: A Comprehensive Molecular Simulation Study

inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c05490openalex-snapshot

Conformational Properties of Aβ Peptide Oligomers in Aqueous Ionic Liquid Solution: Insights from Molecular Simulation Studies

inferred← citeshttps://doi.org/10.1021/acs.jpcb.3c08451openalex-snapshot

Protein Interface Regulating the Inserting Process of Imidazole Ionic Liquids into the Cell Membrane

inferred← citeshttps://doi.org/10.1021/acs.jpcb.4c05135openalex-snapshot

Inhibition of Aβ16–22 Aggregation by [TEA]+[Ms]− Follows Weakening of the Hydrophobic Core and Sequestration of Peptides in Ionic Liquid Nanodomains

inferred← citeshttps://doi.org/10.1021/acs.jpcb.4c07336openalex-snapshot

Investigating the Restricted Dynamical Environment in and Around Aβ Peptide Oligomers in Aqueous Ionic Liquid Solutions

inferred← citeshttps://doi.org/10.1021/acs.jpcb.6c01716openalex-snapshot

Anion-Dependent Modulation of Cytochrome c Structural Dynamics in Bmim-Based Ionic Liquid–Water Systems

inferred← citeshttps://doi.org/10.1021/acs.langmuir.4c03886openalex-snapshot

Ionic Liquid-Induced Modulation of Ubiquitin Stability: The Dominant Role of Hydrophobic Interactions

inferred← citeshttps://doi.org/10.1021/acssuschemeng.2c04216openalex-snapshot

Enzyme Hydration: How to Retain Resistance in Ionic Liquids

inferred← citeshttps://doi.org/10.1021/acssuschemeng.4c01572openalex-snapshot

Low-Cost CO2-Based Alkyl Carbamate Ionic Liquids for Accelerating Enzymatic Oil Hydrolysis

inferred← citeshttps://doi.org/10.1039/d0cp03833dopenalex-snapshot

Molecular simulation of osmometry in aqueous solutions of the BMIMCl ionic liquid: a potential route to force field parameterization of liquid mixtures

inferred← citeshttps://doi.org/10.1039/d2cp02636hopenalex-snapshot

Molecular simulations explain the exceptional thermal stability, solvent tolerance and solubility of protein–polymer surfactant bioconjugates in ionic liquids

inferred← citeshttps://doi.org/10.1039/d3su00412kopenalex-snapshot

Ion-combination specific effects driving the enzymatic activity of halophilic alcohol dehydrogenase 2 from Haloferax volcanii in aqueous ionic liquid solvent mixtures

inferred← citeshttps://doi.org/10.1039/d4cp01811gopenalex-snapshot

Cation effects and charge inversion contribute to the electrostatic stabilisation of protein bioconjugates in neat ionic liquids

inferred← citeshttps://doi.org/10.1039/d5cp02130hopenalex-snapshot

Insights into ionic liquid-enhanced membrane protein stability through machine learning and molecular simulations

inferred← citeshttps://doi.org/10.1039/d6gc02546copenalex-snapshot

Advances and challenges in fatty acid photodecarboxylases: towards greener chemistry applications?

inferred← citeshttps://doi.org/10.1080/00405000.2021.1912952openalex-snapshot

Enhancing surface performance of wool using reduced ionic liquid

inferred← citeshttps://doi.org/10.1101/2021.04.15.439963openalex-snapshot

Salt-induced first-order structural transition in a DNA-interacting protein

inferred← citeshttps://doi.org/10.1186/s42834-022-00152-9openalex-snapshot

Efficient isolation of keratin from protein-rich waste biomass: a practical approach to minimize environmental impact and valorize waste biomass

inferred← citeshttps://doi.org/10.3389/fchem.2020.598662openalex-snapshot

Use of Ionic Liquids in Protein and DNA Chemistry

inferred← citeshttps://doi.org/10.3390/ijms222212180openalex-snapshot

Steroid-Functionalized Imidazolium Salts with an Extended Spectrum of Antifungal and Antibacterial Activity

inferred← citeshttps://doi.org/10.3390/pharmaceutics14112265openalex-snapshot

Deep Eutectic Systems as Novel Vehicles for Assisting Drug Transdermal Delivery

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.