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The Cation−π Interaction at Protein–Protein Interaction Interfaces: Developing and Learning from Synthetic Mimics of Proteins That Bind Methylated Lysines

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Outgoing claims: the papers this work cites, builds on, or argues with.

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1,3,5-2,4,6-Functionalized, Facially Segregated Benzenes—Exploitation of Sterically Predisposed Systems in Supramolecular Chemistry
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Arginine Methylation
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The Tudor domain ‘Royal Family’: Tudor, plant Agenet, Chromo, PWWP and MBT domains
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5-Substituted-1H-tetrazoles as carboxylic acid isosteres: medicinal chemistry and synthetic methods
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Teaching Old Indicators New Tricks
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Contribution of Surface Salt Bridges to Protein Stability,
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The Cation−π Interaction
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Molecular recognition in aqueous media. New binding studies provide further insights into the cation-.pi. interaction and related phenomena
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Biophysical Probes Reveal a “Compromise” Nature of the Methyl-lysine Binding Pocket in L3MBTL1
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Importance of Charge Independent Effects in Readout of the Trimethyllysine Mark by HP1 Chromodomain
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Reinvestigation of Calixarene-Based Artificial-Signaling Acetylcholine Receptors Useful in Neutral Aqueous (Water/Methanol) Solution
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Small-Molecule Ligands of Methyl-Lysine Binding Proteins
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Recognition Properties of Carboxylic Acid Bioisosteres: Anion Binding by Tetrazoles, Aryl Sulfonamides, and Acyl Sulfonamides on a Calix[4]arene Scaffold
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Synthesis of New Trisulfonated Calix[4]arenes Functionalized at the Upper Rim, and Their Complexation with the Trimethyllysine Epigenetic Mark
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Tetrazoles are Potent Anion Recognition Elements That Emulate the Disfavored Anti Conformations of Carboxylic Acids
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Complexation of Some Amino Acids and Peptides by p-Sulfonatocalix[4]arene and Hexasodium p-Sulfonatocalix[6]arene in Aqueous Solution
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Histone methylation takes the lead
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The CW domain, a new histone recognition module in chromatin proteins
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Epigenetic regulation of development by histone lysine methylation
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Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF
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How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers
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Tudor, MBT and chromo domains gauge the degree of lysine methylation
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Complexation of the basic amino acids lysine and arginine by three sulfonatocalix[n]arenes (n = 4, 6 and 8) in water: microcalorimetric determination of the Gibbs energies, enthalpies and entropies of complexation
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The first example of a substrate spanning the calix[4]arene bilayer: the solid state complex of p-sulfonatocalix[4]arene with l-lysine
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Binding of dipeptides and tripeptides containing lysine or arginine by p-sulfonatocalixarenes in water: NMR and microcalorimetric studiesElectronic supplementary information (ESI) available: chemical shifts experienced by different protons of KK, RR, KKK or RRR in the presence of increasing…
inferredcites →https://doi.org/10.1039/b514896kopenalex-snapshot
Inclusion of naturally occurring amino acids in water soluble calix[4]arenes: a microcalorimetric and 1 H NMR investigation supported by molecular modeling
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Biochemistry of the para-sulfonato-calix[n]arenes
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A shape-dependent hydrophobic effect for tetrazoles
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A small molecule receptor that selectively recognizes trimethyl lysine in a histonepeptide with native protein-like affinity
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Biochemistry of anionic calix[n]arenes
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inferredcites →https://doi.org/10.1073/pnas.0610850104openalex-snapshot
Recognition of trimethyllysine by a chromodomain is not driven by the hydrophobic effect
inferredcites →https://doi.org/10.1073/pnas.1008937107openalex-snapshot
Binding of different histone marks differentially regulates the activity and specificity of polycomb repressive complex 2 (PRC2)
inferredcites →https://doi.org/10.1074/jbc.270.5.2284openalex-snapshot
Tetrazole and Carboxylate Groups of Angiotensin Receptor Antagonists Bind to the Same Subsite by Different Mechanisms
inferredcites →https://doi.org/10.1074/jbc.m110.191411openalex-snapshot
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inferredcites →https://doi.org/10.1074/jbc.m710020200openalex-snapshot
Molecular Basis of Histone H3K4me3 Recognition by ING4
inferredcites →https://doi.org/10.1080/10610279508029480openalex-snapshot
Binding of acetylcholine and other quaternary ammonium cations by sulfonated calixarenes. Crystal structure of a [choline-tetrasulfonated calix[4]arene] complex
inferredcites →https://doi.org/10.1093/jn/137.6.1504sopenalex-snapshot
Cation-π Interactions Involving Aromatic Amino Acids
inferredcites →https://doi.org/10.1101/gad.1110503openalex-snapshot
Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains
inferredcites →https://doi.org/10.1126/science.1072361openalex-snapshot
Selection and Amplification of Hosts From Dynamic Combinatorial Libraries of Macrocyclic Disulfides
inferredcites →https://doi.org/10.1139/v10-100openalex-snapshot
Modular incorporation of 1-benzyltryptophan into dipeptide hosts that bind acetylcholine in pure water
inferredcites →https://doi.org/10.1248/cpb.53.90openalex-snapshot
Interaction between Quaternary Ammonium Ions and Dipeptides: Positive Anion Allosteric Effect
inferredcites →https://doi.org/10.1371/journal.pone.0018919openalex-snapshot
Structural and Histone Binding Ability Characterizations of Human PWWP Domains
inferredcites →https://doi.org/10.3109/10409238.2011.619164openalex-snapshot
Epigenetic virtues of chromodomains
inferredcites →https://doi.org/10.3762/bjoc.8.1openalex-snapshot
(How) does 1,3,5-triethylbenzene scaffolding work? Analyzing the abilities of 1,3,5-triethylbenzene- and 1,3,5-trimethylbenzene-based scaffolds to preorganize the binding elements of supramolecular hosts and to improve binding of targets

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Selective binding of choline by a phosphate-coordination-based triple helicate featuring an aromatic box
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Pillararene-related Macrocycles
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Development and mechanistic studies of an optimized receptor for trimethyllysine using iterative redesign by dynamic combinatorial chemistry
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Anionic deep cavitands enable the adhesion of unmodified proteins at a membrane bilayer
inferred← citeshttps://doi.org/10.1039/c5ce00153fopenalex-snapshot
Novel mixed 1D–2D lanthanide coordination polymers based on p -sulfonatocalix[4]arene and 4,4′-bipyridine- N , N ′-dioxide where p -sulfonatocalix[4]arene acts as a guest
inferred← citeshttps://doi.org/10.1039/c5nr06456bopenalex-snapshot
Impact of cation–π interactions on the cell voltage of carbon nanotube-based Li batteries
inferred← citeshttps://doi.org/10.1039/c7cp01491kopenalex-snapshot
A theoretical study of complexes formed between cations and curved aromatic systems: electrostatics does not always control cation–π interaction
inferred← citeshttps://doi.org/10.1039/c7cp01889dopenalex-snapshot
A journey from calix[4]arene to calix[6] and calix[8]arene reveals more than a matter of size. Receptor concentration affects the stability and stoichiometric nature of the complexes
inferred← citeshttps://doi.org/10.1039/c7nr02491fopenalex-snapshot
Probing lysine mono-methylation in histone H3 tail peptides with an abiotic receptor coupled to a non-plasmonic resonator
inferred← citeshttps://doi.org/10.1039/c7ob01921aopenalex-snapshot
Optimization of a synthetic receptor for dimethyllysine using a biphenyl-2,6-dicarboxylic acid scaffold: insights into selective recognition of hydrophilic guests in water
inferred← citeshttps://doi.org/10.1039/c7sc00865aopenalex-snapshot
Site selective reading of epigenetic markers by a dual-mode synthetic receptor array
inferred← citeshttps://doi.org/10.1039/c8cc01009aopenalex-snapshot
Recognition of shorter and longer trimethyllysine analogues by epigenetic reader proteins
inferred← citeshttps://doi.org/10.1039/c9cc06064bopenalex-snapshot
A supramolecular sensor array for selective immunoglobulin deficiency analysis
inferred← citeshttps://doi.org/10.1039/d0cc00415dopenalex-snapshot
Using changes in speciation in a dynamic combinatorial library as a fingerprint to differentiate the methylation states of arginine
inferred← citeshttps://doi.org/10.1039/d0sc04245eopenalex-snapshot
Anion binding to ubiquitin and its relevance to the Hofmeister effects
inferred← citeshttps://doi.org/10.1039/d1ob00524copenalex-snapshot
An easily accessible, lower rim substituted calix[4]arene selectively binds N , N -dimethyllysine
inferred← citeshttps://doi.org/10.1039/d2ob01487dopenalex-snapshot
Molecular recognition of methylated amino acids and peptides by Pillar[6]MaxQ
inferred← citeshttps://doi.org/10.1039/d3cp06184aopenalex-snapshot
Spodium bonding with noble gas atoms
inferred← citeshttps://doi.org/10.1039/d4ob00843jopenalex-snapshot
Enhanced binding of methyl alkylammonium cations through preorganization of a water-soluble calix[4]pyrrole
inferred← citeshttps://doi.org/10.1039/d4sc03464copenalex-snapshot
Probing the non-covalent forces key to the thermodynamics of β-hairpin unfolding
inferred← citeshttps://doi.org/10.1039/d5cc02339dopenalex-snapshot
Biosensing and biorecognition with water-soluble macrocyclic hosts
inferred← citeshttps://doi.org/10.1042/bj20140145openalex-snapshot
Inhibition of histone binding by supramolecular hosts
inferred← citeshttps://doi.org/10.1074/jbc.m113.535567openalex-snapshot
Multimethylation of Rickettsia OmpB Catalyzed by Lysine Methyltransferases
inferred← citeshttps://doi.org/10.1080/10610278.2013.872786openalex-snapshot
Chemical agents for binding post-translationally methylated lysines and arginines
inferred← citeshttps://doi.org/10.1093/glycob/cwt062openalex-snapshot
Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach
inferred← citeshttps://doi.org/10.1103/physrevlett.121.226102openalex-snapshot
Unexpectedly High Salt Accumulation inside Carbon Nanotubes Soaked in Dilute Salt Solutions
inferred← citeshttps://doi.org/10.1111/febs.14056openalex-snapshot
Beyond histones – the expanding roles of protein lysine methylation
inferred← citeshttps://doi.org/10.1139/cjc-2013-0186openalex-snapshot
Determining the effects of salt, buffer, and temperature on the complexation of methylated ammonium ions and methyllysines by sulfonated calixarenes
inferred← citeshttps://doi.org/10.18632/oncotarget.24319openalex-snapshot
Prominent role of histone lysine demethylases in cancer epigenetics and therapy
inferred← citeshttps://doi.org/10.26434/chemrxiv-2022-g13t8openalex-snapshot
Role of Cation-π Interactions in the Phase Behavior and Thermodynamics of Complex Coacervates
inferred← citeshttps://doi.org/10.3389/fchem.2022.868773openalex-snapshot
Covalent Chemical Tools for Profiling Post-Translational Modifications
inferred← citeshttps://doi.org/10.3390/c6040060openalex-snapshot
Tetrel Bonding Interactions Involving Carbon at Work: Recent Advances in Crystal Engineering and Catalysis
inferred← citeshttps://doi.org/10.3390/ijms242417353openalex-snapshot
A Transient π–π or Cation–π Interaction between Degron and Degrader Dual Residues: A Key Step for the Substrate Recognition and Discrimination in the Processive Degradation of SulA by ClpYQ (HslUV) Protease in Escherichia coli
inferred← citeshttps://doi.org/10.3390/solids6030038openalex-snapshot
From Na2Cl to CaCl: Progress in the 2D Crystals of Unconventional Stoichiometries in Ambient Conditions
inferred← citeshttps://doi.org/10.5004/dwt.2019.24174openalex-snapshot
The adsorption properties of biochar derived from woody plants or bamboo for cadmium in aqueous solution
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