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Symmetrical Bisbenzimidazoles with Benzenediyl Spacer: The Role of the Shape of the Ligand on the Stabilization and Structural Alterations in Telomeric G-Quadruplex DNA and Telomerase Inhibition

https://doi.org/10.1021/bc9003298
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
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Life at the End of the Chromosome: Telomeres and Telomerase
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Distamycin Analogues without Leading Amide at Their N-Termini − Comparative Binding Properties to AT- and GC-Rich DNA Sequences
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Ligand‐Driven G‐Quadruplex Conformational Switching By Using an Unusual Mode of Interaction
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A Metal‐Mediated Conformational Switch Controls G‐Quadruplex Binding Affinity
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Platinum Phenanthroimidazole Complexes as G‐Quadruplex DNA Selective Binders
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G‐Quadruplex DNA Structures and Organic Chemistry: More Than One Connection
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Development and testing of a general amber force field
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The crystal structure of a parallel-stranded guanine tetraplex at 0.95Å resolution
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Optical studies of the interaction of 33258 Hoechst with DNA, chromatin, and metaphase chromosomes
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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
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Metal-ion-dependent oxidative DNA cleavage by transition metal complexes of a new water-soluble salen derivative
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VMD: Visual molecular dynamics
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TRAP–LIG, a modified telomere repeat amplification protocol assay to quantitate telomerase inhibition by small molecules
inferredcites →https://doi.org/10.1016/j.biochi.2008.03.006openalex-snapshot
Targeting DNA quadruplexes with distamycin A and its derivatives: An ITC and NMR study
inferredcites →https://doi.org/10.1016/j.bpc.2009.04.005openalex-snapshot
The binding mode of porphyrins with cation side arms to (TG4T)4 G-quadruplex: Spectroscopic evidence
inferredcites →https://doi.org/10.1016/j.canlet.2007.11.017openalex-snapshot
Antitumor activity of G-quadruplex–interactive agent TMPyP4 in K562 leukemic cells
inferredcites →https://doi.org/10.1016/j.ymeth.2006.10.004openalex-snapshot
Fluorescence-based melting assays for studying quadruplex ligands
inferredcites →https://doi.org/10.1016/s0014-5793(98)01043-6openalex-snapshot
Following G‐quartet formation by UV‐spectroscopy
inferredcites →https://doi.org/10.1016/s0022-2836(02)01354-2openalex-snapshot
Structure of a G-quadruplex–Ligand Complex
inferredcites →https://doi.org/10.1016/s0026-895x(24)12212-2openalex-snapshot
A G-Quadruplex-Interactive Potent Small-Molecule Inhibitor of Telomerase Exhibiting in Vitro and in Vivo Antitumor Activity
inferredcites →https://doi.org/10.1016/s0040-4039(00)00802-9openalex-snapshot
Facile synthesis of oligopeptide distamycin analogs devoid of hydrogen bond donors or acceptors at the N-terminus: sequence-specific duplex DNA binding as a function of peptide chain length
inferredcites →https://doi.org/10.1016/s0165-6147(00)01457-7openalex-snapshot
G-quadruplex DNA: a potential target for anti-cancer drug design
inferredcites →https://doi.org/10.1016/s0969-2126(94)00117-0openalex-snapshot
Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex
inferredcites →https://doi.org/10.1021/bc0341730openalex-snapshot
Efficient Conjugation and Characterization of Distamycin-Based Peptides with Selected Oligonucleotide Stretches
inferredcites →https://doi.org/10.1021/bc970121xopenalex-snapshot
Role of the Central Metal Ion and Ligand Charge in the DNA Binding and Modification by Metallosalen Complexes
inferredcites →https://doi.org/10.1021/bi00130a006openalex-snapshot
Strontium(2+) facilitates intermolecular G-quadruplex formation of telomeric sequences
inferredcites →https://doi.org/10.1021/bi00232a013openalex-snapshot
Monovalent cation induced structural transitions in telomeric DNAs: G-DNA folding intermediates
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Synthetic Inhibitors of the Processing of Pretransfer RNA by the Ribonuclease P Ribozyme: Enzyme Inhibitors Which Act by Binding to Substrate
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Synthesis and Evaluation of a Novel Class of G-Quadruplex-Stabilizing Small Molecules Based on the 1,3-Phenylene-Bis(piperazinyl benzimidazole) System
inferredcites →https://doi.org/10.1021/ja00124a002openalex-snapshot
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules
inferredcites →https://doi.org/10.1021/ja017308qopenalex-snapshot
Telomestatin, a Potent Telomerase Inhibitor That Interacts Quite Specifically with the Human Telomeric Intramolecular G-Quadruplex
inferredcites →https://doi.org/10.1021/ja045154jopenalex-snapshot
Loop-Length-Dependent Folding of G-Quadruplexes
inferredcites →https://doi.org/10.1021/ja0505088openalex-snapshot
Telomestatin and Diseleno Sapphyrin Bind Selectively to Two Different Forms of the Human Telomeric G-Quadruplex Structure
inferredcites →https://doi.org/10.1021/ja0603958openalex-snapshot
Engineering the Quadruplex Fold: Nucleoside Conformation Determines Both Folding Topology and Molecularity in Guanine Quadruplexes
inferredcites →https://doi.org/10.1021/ja0661919openalex-snapshot
Stabilization of G-Quadruplex DNA by Highly Selective Ligands via Click Chemistry
inferredcites →https://doi.org/10.1021/ja0730462openalex-snapshot
Human Telomeric DNA Forms Parallel-Stranded Intramolecular G-Quadruplex in K+ Solution under Molecular Crowding Condition
inferredcites →https://doi.org/10.1021/ja8016973openalex-snapshot
Structural Basis of DNA Quadruplex Recognition by an Acridine Drug
inferredcites →https://doi.org/10.1021/jm030114wopenalex-snapshot
Influence of Phenyl Ring Disubstitution on Bisbenzimidazole and Terbenzimidazole Cytotoxicity: Synthesis and Biological Evaluation as Radioprotectors
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Rational Design of Substituted Diarylureas: A Scaffold for Binding to G-Quadruplex Motifs
inferredcites →https://doi.org/10.1021/jo0619433openalex-snapshot
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Molecular recognition between ligands and nucleic acids: novel pyridine- and benzoxazole-containing agents related to Hoechst 33258 that exhibit altered DNA sequence specificity deduced from footprinting analysis and spectroscopic studies
inferredcites →https://doi.org/10.1038/345458a0openalex-snapshot
Telomeres shorten during ageing of human fibroblasts
inferredcites →https://doi.org/10.1038/350569a0openalex-snapshot
Structure and function of telomeres
inferredcites →https://doi.org/10.1038/nrc749openalex-snapshot
DNA and its associated processes as targets for cancer therapy
inferredcites →https://doi.org/10.1039/b806042hopenalex-snapshot
G-quadruplex recognition by bis-indole carboxamides
inferredcites →https://doi.org/10.1039/b807916aopenalex-snapshot
Bis(benzimidazole)pyridine derivative as a new class of G-quadruplex inducing and stabilizing ligand
inferredcites →https://doi.org/10.1039/b816861jopenalex-snapshot
Controlled-folding of a small molecule modulates DNA G-quadruplex recognition
inferredcites →https://doi.org/10.1039/c39950002489openalex-snapshot
Ambient oxygen activating water soluble cobalt–salen complex for DNA cleavage
inferredcites →https://doi.org/10.1039/cc9960001515openalex-snapshot
DNA cleavage by intercalatable cobalt–bispicolylamine complexes activated by visible light
inferredcites →https://doi.org/10.1039/tf9565200261openalex-snapshot
The interaction of aminoacridines with nucleic acids
inferredcites →https://doi.org/10.1063/1.445869openalex-snapshot
Comparison of simple potential functions for simulating liquid water
inferredcites →https://doi.org/10.1063/1.464397openalex-snapshot
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
inferredcites →https://doi.org/10.1093/nar/gkl182openalex-snapshot
Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures
inferredcites →https://doi.org/10.1093/nar/gkm188openalex-snapshot
Defining the mode, energetics and specificity with which a macrocyclic hexaoxazole binds to human telomeric G-quadruplex DNA
inferredcites →https://doi.org/10.1111/j.1742-4658.2008.06541.xopenalex-snapshot
Binding of berberine to human telomeric quadruplex – spectroscopic, calorimetric and molecular modeling studies
inferredcites →https://doi.org/10.1155/2008/294756openalex-snapshot
Cationic Porphyrin Induced a Telomeric DNA to G‐Quadruplex Form in Water
inferredcites →https://doi.org/10.1158/0008-5472.can-04-2910openalex-snapshot
The G-Quadruplex-Interactive Molecule BRACO-19 Inhibits Tumor Growth, Consistent with Telomere Targeting and Interference with Telomerase Function
inferredcites →https://doi.org/10.1177/33.4.2579998openalex-snapshot
Multiple binding modes for Hoechst 33258 to DNA.
inferredcites →https://doi.org/10.1517/13543776.8.12.1567openalex-snapshot
Telomeres and telomerase: targets for cancer chemotherapy?
inferredcites →https://doi.org/10.2174/092986708785133013openalex-snapshot
Medical Implications of Benzimidazole Derivatives as Drugs Designed for Targeting DNA and DNA Associated Processes
inferredcites →https://doi.org/10.2174/0929867303666220307172622openalex-snapshot
DNA Complexing Minor Groove-Binding Ligands: Perspectives in Antitumour and Antimicrobial Drug Design
inferredcites →https://doi.org/10.2174/1381612003400849openalex-snapshot
G-Quadruplex DNA as a Target for Drug Design

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structures
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Fluorescence Light-Up Probe for Parallel G-Quadruplexes
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