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Thermal versus Guanidine-Induced Unfolding of Ubiquitin. An Analysis in Terms of the Contributions from Charge−Charge Interactions to Protein Stability

https://doi.org/10.1021/bi9905819
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Oligomerization and divalent ion binding properties of the S100P protein: a Ca2+/Mg2+-switch model
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Accessible Surface Area
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Physical-chemical properties of ubiquitin
inferredcites →https://doi.org/10.1016/0022-2836(73)90011-9openalex-snapshot
Environment and exposure to solvent of protein atoms. Lysozyme and insulin
inferredcites →https://doi.org/10.1016/0022-2836(82)90505-8openalex-snapshot
Calculation of the electric potential in the active site cleft due to α-helix dipoles
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On the environment of ionizable groups in globular proteins
inferredcites →https://doi.org/10.1016/0022-2836(87)90679-6openalex-snapshot
Structure of ubiquitin refined at 1.8 Å resolution
inferredcites →https://doi.org/10.1016/0022-2836(92)90963-kopenalex-snapshot
Protein interactions with urea and guanidinium chloride
inferredcites →https://doi.org/10.1016/0968-0004(90)90136-yopenalex-snapshot
Protein structure: A practical approach
inferredcites →https://doi.org/10.1016/s0167-4838(98)00252-0openalex-snapshot
Cold denaturation of ubiquitin
inferredcites →https://doi.org/10.1021/j100176a093openalex-snapshot
Multiple-site titration curves of proteins: an analysis of exact and approximate methods for their calculation
inferredcites →https://doi.org/10.1021/ja00172a038openalex-snapshot
Semianalytical treatment of solvation for molecular mechanics and dynamics
inferredcites →https://doi.org/10.1119/1.14986openalex-snapshot
Thermodynamics and an Introduction to Thermostatistics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Dramatic Increase in Unfolding Rate of Ubiquitin at High Sds Concentrations: A Threshold Value for Sds Penetration?
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inferred← citeshttps://doi.org/10.1021/bi901219xopenalex-snapshot
Peptide Conformer Acidity Analysis of Protein Flexibility Monitored by Hydrogen Exchange
inferred← citeshttps://doi.org/10.1021/bi9828627openalex-snapshot
Putative Interhelix Ion Pairs Involved in the Stability of Myoglobin
inferred← citeshttps://doi.org/10.1021/ct3002267openalex-snapshot
Counterion Effects on the Denaturing Activity of Guanidinium Cation to Protein
inferred← citeshttps://doi.org/10.1021/ja012267jopenalex-snapshot
Detailed Unfolding and Folding of Gaseous Ubiquitin Ions Characterized by Electron Capture Dissociation
inferred← citeshttps://doi.org/10.1021/ja030074lopenalex-snapshot
Stabilization of β-Hairpin Peptides by Salt Bridges: Role of Preorganization in the Energetic Contribution of Weak Interactions
inferred← citeshttps://doi.org/10.1021/ja305300mopenalex-snapshot
Macromolecular Crowding and Protein Stability
inferred← citeshttps://doi.org/10.1021/ja503205yopenalex-snapshot
Protein Stabilization by Macromolecular Crowding through Enthalpy Rather Than Entropy
inferred← citeshttps://doi.org/10.1021/ja9938884openalex-snapshot
Toward Structural Biology in Supercooled Water
inferred← citeshttps://doi.org/10.1021/jp020483oopenalex-snapshot
Genetic Algorithm to Design Stabilizing Surface-Charge Distributions in Proteins
inferred← citeshttps://doi.org/10.1021/jp506506popenalex-snapshot
Using Hydrogen–Deuterium Exchange to Monitor Protein Structure in the Presence of Gold Nanoparticles
inferred← citeshttps://doi.org/10.1021/jp510342mopenalex-snapshot
Are Protein Folding Intermediates the Evolutionary Consequence of Functional Constraints?
inferred← citeshttps://doi.org/10.1023/a:1014508610017openalex-snapshot
Urea-Induced Denaturation of Human Serum Albumin Labeled with Acrylodan
inferred← citeshttps://doi.org/10.1038/ncomms7116openalex-snapshot
The unexpected role of polyubiquitin chains in the formation of fibrillar aggregates
inferred← citeshttps://doi.org/10.1038/nsmb.2020openalex-snapshot
Single-molecule paleoenzymology probes the chemistry of resurrected enzymes
inferred← citeshttps://doi.org/10.1038/s41467-019-10002-9openalex-snapshot
A binding cooperativity switch driven by synergistic structural swelling of an osmo-regulatory protein pair
inferred← citeshttps://doi.org/10.1038/s41598-018-20669-7openalex-snapshot
The Molecular Basis of the Sodium Dodecyl Sulfate Effect on Human Ubiquitin Structure: A Molecular Dynamics Simulation Study
inferred← citeshttps://doi.org/10.1039/b600829copenalex-snapshot
Ubiquitin: a small protein folding paradigm
inferred← citeshttps://doi.org/10.1039/b819365gopenalex-snapshot
Enhancing the fluorescence of tyr-59 in ubiquitin by blocking proton transfer
inferred← citeshttps://doi.org/10.1039/c4cp06102kopenalex-snapshot
Imprints of function on the folding landscape: functional role for an intermediate in a conserved eukaryotic binding protein
inferred← citeshttps://doi.org/10.1039/c5cp04348dopenalex-snapshot
Predicting stabilizing mutations in proteins using Poisson–Boltzmann based models: study of unfolded state ensemble models and development of a successful binary classifier based on residue interaction energies
inferred← citeshttps://doi.org/10.1039/c8mt00347eopenalex-snapshot
Kinetics of competitive Cd2+ binding pathways: the realistic structure of intrinsically disordered, partially metallated metallothioneins
inferred← citeshttps://doi.org/10.1039/d0cp01758bopenalex-snapshot
Non-specific DNA-driven quinary interactions promote structural transitions in proteins
inferred← citeshttps://doi.org/10.1039/d0sc02200dopenalex-snapshot
Mapping protein–polymer conformations in bioconjugates with atomic precision
inferred← citeshttps://doi.org/10.1042/bcj20160532openalex-snapshot
Engineering ancestral protein hyperstability
inferred← citeshttps://doi.org/10.1042/bj20140250openalex-snapshot
The consensus-based approach for gene/enzyme replacement therapies and crystallization strategies: the case of human alanine–glyoxylate aminotransferase
inferred← citeshttps://doi.org/10.1042/bsr20180592openalex-snapshot
Isolated domains of recombinant human apo-metallothionein 1A are folded at neutral pH: a denaturant and heat-induced unfolding study using ESI-MS
inferred← citeshttps://doi.org/10.1063/1.4929391openalex-snapshot
A theoretical method to compute sequence dependent configurational properties in charged polymers and proteins
inferred← citeshttps://doi.org/10.1063/5.0232041openalex-snapshot
Exploring the molecular pathways of the activation process in PPARγ recurrent bladder cancer mutants
inferred← citeshttps://doi.org/10.1073/pnas.0630309100openalex-snapshot
Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding
inferred← citeshttps://doi.org/10.1073/pnas.0709881105openalex-snapshot
Large-scale modulation of thermodynamic protein folding barriers linked to electrostatics
inferred← citeshttps://doi.org/10.1073/pnas.0808220106openalex-snapshot
Rational stabilization of enzymes by computational redesign of surface charge–charge interactions
inferred← citeshttps://doi.org/10.1073/pnas.1311495110openalex-snapshot
Ultrafast folding kinetics and cooperativity of villin headpiece in single-molecule force spectroscopy
inferred← citeshttps://doi.org/10.1073/pnas.1635051100openalex-snapshot
Role of residual structure in the unfolded state of a thermophilic protein
inferred← citeshttps://doi.org/10.1074/jbc.m117.788919openalex-snapshot
Glycosylation of the core of the HIV-1 envelope subunit protein gp120 is not required for native trimer formation or viral infectivity
inferred← citeshttps://doi.org/10.1074/jbc.m504216200openalex-snapshot
Identifying and Engineering Ion Pairs in Adenylate Kinases
inferred← citeshttps://doi.org/10.1074/jbc.m610174200openalex-snapshot
Structure of Phenylalanine Hydroxylase from Colwellia psychrerythraea 34H, a Monomeric Cold Active Enzyme with Local Flexibility around the Active Site and High Overall Stability
inferred← citeshttps://doi.org/10.1074/jbc.ra118.005006openalex-snapshot
Bacterially expressed HIV-1 gp120 outer-domain fragment immunogens with improved stability and affinity for CD4-binding site neutralizing antibodies
inferred← citeshttps://doi.org/10.1074/jbc.ra120.013396openalex-snapshot
Quantitating denaturation by formic acid: imperfect repeats are essential to the stability of the functional amyloid protein FapC
inferred← citeshttps://doi.org/10.1080/20014091074174openalex-snapshot
Thermophilic Adaptation of Proteins
inferred← citeshttps://doi.org/10.1088/1478-3975/14/1/013002openalex-snapshot
Linking computation and experiments to study the role of charge–charge interactions in protein folding and stability
inferred← citeshttps://doi.org/10.1093/hmg/ddx238openalex-snapshot
Enhanced vulnerability of human proteins towards disease-associated inactivation through divergent evolution
inferred← citeshttps://doi.org/10.1093/molbev/msad032openalex-snapshot
Cell Survival Enabled by Leakage of a Labile Metabolic Intermediate
inferred← citeshttps://doi.org/10.1093/nar/gky732openalex-snapshot
Tunable order–disorder continuum in protein–DNA interactions
inferred← citeshttps://doi.org/10.1093/protein/gzi051openalex-snapshot
How to improve nature: study of the electrostatic properties of the surface of α-lactalbumin
inferred← citeshttps://doi.org/10.1093/protein/gzr004openalex-snapshot
Modulating the pH-activity profile of cellulase A from Cellulomonas fimi by replacement of surface residues
inferred← citeshttps://doi.org/10.1101/2020.05.31.126615openalex-snapshot
An exploration of the SARS-CoV-2 spike receptor binding domain (RBD) – a complex palette of evolutionary and structural features
inferred← citeshttps://doi.org/10.1101/2023.05.08.539917openalex-snapshot
Dark nanodiscs as a model membrane for evaluating membrane protein thermostability by differential scanning fluorimetry
inferred← citeshttps://doi.org/10.1101/2023.05.11.540313openalex-snapshot
Chemical protein unfolding - A simple cooperative model
inferred← citeshttps://doi.org/10.1101/2024.07.28.605522openalex-snapshot
Modulation of Electrostatic Interactions as a Mechanism of Cryptic Adaptation of Colwellia to High Hydrostatic Pressure
inferred← citeshttps://doi.org/10.1103/physreve.72.051928openalex-snapshot
Unfolding dynamics of the protein ubiquitin: Insight from simulation
inferred← citeshttps://doi.org/10.1110/ps.0227903openalex-snapshot
Electrostatic interactions in the reconstitution of an SH2 domain from constituent peptide fragments
inferred← citeshttps://doi.org/10.1110/ps.0302303openalex-snapshot
Solution structure and thermal stability of ribosomal protein L30e from hyperthermophilic archaeon Thermococcus celer
inferred← citeshttps://doi.org/10.1110/ps.03595904openalex-snapshot
Structural and stability effects of phosphorylation: Localized structural changes in phenylalanine hydroxylase
inferred← citeshttps://doi.org/10.1110/ps.062383807openalex-snapshot
BPPred: A Web‐based computational tool for predicting biophysical parameters of proteins
inferred← citeshttps://doi.org/10.1110/ps.07101openalex-snapshot
The role of a β‐bulge in the folding of the β‐hairpin structure in ubiquitin
inferred← citeshttps://doi.org/10.1110/ps.073091607openalex-snapshot
Computational design of the Fyn SH3 domain with increased stability through optimization of surface charge–charge interactions
inferred← citeshttps://doi.org/10.1110/ps.17601openalex-snapshot
Understanding thermostability in cytochrome P450 by combinatorial mutagenesis
inferred← citeshttps://doi.org/10.1110/ps.4700102openalex-snapshot
Distance dependence and salt sensitivity of pairwise, coulombic interactions in a protein
inferred← citeshttps://doi.org/10.1110/ps.9.4.820openalex-snapshot
The sarcosine effect on protein stability: A case of nonadditivity?
inferred← citeshttps://doi.org/10.1111/febs.13651openalex-snapshot
The TDP‐43 N‐terminal domain structure at high resolution
inferred← citeshttps://doi.org/10.1111/j.1399-3011.2004.00147.xopenalex-snapshot
Single‐point mutations at the surface of MB‐1Trp lead to important changes in its conformational properties
inferred← citeshttps://doi.org/10.1146/annurev-chembioeng-060816-101404openalex-snapshot
Driving Forces for Nonnative Protein Aggregation and Approaches to Predict Aggregation-Prone Regions
inferred← citeshttps://doi.org/10.1155/s1110724301000249openalex-snapshot
The Thermal Stability of the Fusarium solani pisi Cutinase as a Function of pH
inferred← citeshttps://doi.org/10.1186/s43556-025-00350-yopenalex-snapshot
Biomolecular condensates: molecular structure, biological functions, diseases, and therapeutic targets
inferred← citeshttps://doi.org/10.1371/journal.pone.0019425openalex-snapshot
Rational Design of Protein Stability: Effect of (2S,4R)-4-Fluoroproline on the Stability and Folding Pathway of Ubiquitin
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