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Identification of a Minimal Subset of Receptor Conformations for Improved Multiple Conformation Docking and Two-Step Scoring

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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1097-0282(2000)56:4<275::aid-bip10024>3.0.co;2-eopenalex-snapshot
Theory and applications of the generalized born solvation model in macromolecular simulations
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1006/jmbi.2001.4551openalex-snapshot
FlexE: efficient molecular docking considering protein structure variations
inferredcites →https://doi.org/10.1006/taap.1998.8560openalex-snapshot
In VitroEstrogenicity of the Catechol Metabolites of Selected Polychlorinated Biphenyls
inferredcites →https://doi.org/10.1016/s0933-3657(02)00058-1openalex-snapshot
Principles of Data Mining
inferredcites →https://doi.org/10.1021/cr00023a012openalex-snapshot
From atoms and bonds to three-dimensional atomic coordinates: automatic model builders
inferredcites →https://doi.org/10.1021/jm001044lopenalex-snapshot
Protein-Based Virtual Screening of Chemical Databases. 1. Evaluation of Different Docking/Scoring Combinations
inferredcites →https://doi.org/10.1021/jm001045dopenalex-snapshot
Simulations of the Estrogen Receptor Ligand-Binding Domain: Affinity of Natural Ligands and Xenoestrogens
inferredcites →https://doi.org/10.1021/jp991997zopenalex-snapshot
Method for Including the Dynamic Fluctuations of a Protein in Computer-Aided Drug Design
inferredcites →https://doi.org/10.1021/tx000208yopenalex-snapshot
Structure−Activity Relationships for a Large Diverse Set of Natural, Synthetic, and Environmental Estrogens
inferredcites →https://doi.org/10.1021/tx960054fopenalex-snapshot
Ligand-Based Identification of Environmental Estrogens
inferredcites →https://doi.org/10.1021/tx970170yopenalex-snapshot
Detection of Weak Estrogenic Flavonoids Using a Recombinant Yeast Strain and a Modified MCF7 Cell Proliferation Assay
inferredcites →https://doi.org/10.1023/a:1015930826903openalex-snapshot
Reproducing the conformations of protein-bound ligands: A critical evaluation of several popular conformational searching tools
inferredcites →https://doi.org/10.1073/pnas.94.14.7129openalex-snapshot
Contacting the protein folding funnel with NMR
inferredcites →https://doi.org/10.1073/pnas.94.3.777openalex-snapshot
Structural correlations in protein folding funnels
inferredcites →https://doi.org/10.1093/toxsci/54.1.138openalex-snapshot
The Estrogen Receptor Relative Binding Affinities of 188 Natural and Xenochemicals: Structural Diversity of Ligands
inferredcites →https://doi.org/10.1124/mol.57.3.474openalex-snapshot
A Single Glycine Residue at the Entrance to the First Membrane-Spanning Domain of the γ-Aminobutyric Acid Type A Receptor β2Subunit Affects Allosteric Sensitivity to GABA and Anesthetics
inferredcites →https://doi.org/10.1126/science.287.5460.1960openalex-snapshot
Drug Discovery: A Historical Perspective
inferredcites →https://doi.org/10.1126/science.287.5460.1964openalex-snapshot
Target-Oriented and Diversity-Oriented Organic Synthesis in Drug Discovery
inferredcites →https://doi.org/10.1146/annurev.biophys.32.110601.142532openalex-snapshot
Molecular Recognition and Docking Algorithms
inferredcites →https://doi.org/10.1210/endo.138.9.5487openalex-snapshot
QSAR Models for Binding of Estrogenic Compounds to Estrogen Receptor α and β Subtypes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Identification of a Minimal Subset of Receptor Conformations for Improved Multiple Conformation Docking and Two‐Step Scoring.
inferred← citeshttps://doi.org/10.1002/cmdc.201500086openalex-snapshot
Protein Flexibility in Drug Discovery: From Theory to Computation
inferred← citeshttps://doi.org/10.1002/prot.20428openalex-snapshot
Computational identification of proteins for selectivity assays
inferred← citeshttps://doi.org/10.1007/s00894-011-1297-8openalex-snapshot
Insights from comprehensive multiple receptor docking to HDAC8
inferred← citeshttps://doi.org/10.1007/s10822-005-4788-9openalex-snapshot
In-silico Screening using Flexible Ligand Binding Pockets: A Molecular Dynamics-based Approach
inferred← citeshttps://doi.org/10.1007/s10822-013-9670-6openalex-snapshot
Experimental versus predicted affinities for ligand binding to estrogen receptor: iterative selection and rescoring of docked poses systematically improves the correlation
inferred← citeshttps://doi.org/10.1007/s10822-017-0071-0openalex-snapshot
Binding pose and affinity prediction in the 2016 D3R Grand Challenge 2 using the Wilma-SIE method
inferred← citeshttps://doi.org/10.1016/j.beem.2005.09.002openalex-snapshot
Lessons learnt from structural studies of the oestrogen receptor
inferred← citeshttps://doi.org/10.1016/j.ejmech.2011.09.056openalex-snapshot
Molecular mechanism of serotonin transporter inhibition elucidated by a new flexible docking protocol
inferred← citeshttps://doi.org/10.1016/j.ejmech.2026.119306openalex-snapshot
A combination of MD-derived pharmacophores and structure-based strategy identifies dual allosteric inhibitors of NS2B-NS3 proteases in Zika and West Nile viruses
inferred← citeshttps://doi.org/10.1016/j.jmb.2006.03.021openalex-snapshot
Computational Sampling of a Cryptic Drug Binding Site in a Protein Receptor: Explicit Solvent Molecular Dynamics and Inhibitor Docking to p38 MAP Kinase
inferred← citeshttps://doi.org/10.1016/j.jmgm.2004.05.004openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.jmgm.2011.10.002openalex-snapshot
Enrichment of virtual hits by progressive shape-matching and docking
inferred← citeshttps://doi.org/10.1021/acs.jcim.2c00848openalex-snapshot
Actives-Based Receptor Selection Strongly Increases the Success Rate in Structure-Based Drug Design and Leads to Identification of 22 Potent Cancer Inhibitors
inferred← citeshttps://doi.org/10.1021/acs.jcim.5b00684openalex-snapshot
Knowledge-Based Methods To Train and Optimize Virtual Screening Ensembles
inferred← citeshttps://doi.org/10.1021/acs.jcim.6b00261openalex-snapshot
Enhancing Virtual Screening Performance of Protein Kinases with Molecular Dynamics Simulations
inferred← citeshttps://doi.org/10.1021/acs.jcim.6b00791openalex-snapshot
Cosolvent-Based Molecular Dynamics for Ensemble Docking: Practical Method for Generating Druggable Protein Conformations
inferred← citeshttps://doi.org/10.1021/acs.molpharmaceut.2c00219openalex-snapshot
Multi-Level High-Throughput Screening for Discovery of Ligands That Inhibit Insulin Aggregation
inferred← citeshttps://doi.org/10.1021/ci200257bopenalex-snapshot
Discovery of Novel Checkpoint Kinase 1 Inhibitors by Virtual Screening Based on Multiple Crystal Structures
inferred← citeshttps://doi.org/10.1021/ci2005934openalex-snapshot
Potential and Limitations of Ensemble Docking
inferred← citeshttps://doi.org/10.1021/ci300326dopenalex-snapshot
An Automated Docking Protocol for hERG Channel Blockers
inferred← citeshttps://doi.org/10.1021/ci3004557openalex-snapshot
Multiple Structures for Virtual Ligand Screening: Defining Binding Site Properties-Based Criteria to Optimize the Selection of the Query
inferred← citeshttps://doi.org/10.1021/ci700376copenalex-snapshot
Optimization of High Throughput Virtual Screening by Combining Shape-Matching and Docking Methods
inferred← citeshttps://doi.org/10.1021/ci9003078openalex-snapshot
Scoring Ensembles of Docked Protein:Ligand Interactions for Virtual Lead Optimization
inferred← citeshttps://doi.org/10.1021/ci9003943openalex-snapshot
Recipes for the Selection of Experimental Protein Conformations for Virtual Screening
inferred← citeshttps://doi.org/10.1021/ci900407copenalex-snapshot
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An Evaluation of Explicit Receptor Flexibility in Molecular Docking Using Molecular Dynamics and Torsion Angle Molecular Dynamics
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inferred← citeshttps://doi.org/10.1073/pnas.0407404102openalex-snapshot
Free energies of ligand binding for structurally diverse compounds
inferred← citeshttps://doi.org/10.1109/memb.2009.931789openalex-snapshot
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inferred← citeshttps://doi.org/10.1134/s1070363210120248openalex-snapshot
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inferred← citeshttps://doi.org/10.1371/journal.pcbi.1005039openalex-snapshot
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inferred← citeshttps://doi.org/10.1517/17460441.1.4.335openalex-snapshot
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inferred← citeshttps://doi.org/10.1517/17460441.2015.1094458openalex-snapshot
Understanding the challenges of protein flexibility in drug design
inferred← citeshttps://doi.org/10.1517/17460441.3.8.853openalex-snapshot
Virtual screening of the estrogen receptor
inferred← citeshttps://doi.org/10.1533/9781845695743.3.306openalex-snapshot
Computer-aided methodologies to predict endocrine-disrupting potency of chemicals
inferred← citeshttps://doi.org/10.2174/138161211796355056openalex-snapshot
Molecular Recognition in the Case of Flexible Targets
inferred← citeshttps://doi.org/10.70675/de51bc89z33fez456fz9467z959329cc603bopenalex-snapshot
Optimisation de méthodes de criblage virtuel et synthèse de molécules à visée thérapeutique pour le traitement des maladies auto-immunes.
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