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Improved FlexX Docking Using FlexS-Determined Base Fragment Placement

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bip.10207openalex-snapshot
Gaussian docking functions
inferredcites →https://doi.org/10.1002/jcc.540150503openalex-snapshot
ICM—A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation
inferredcites →https://doi.org/10.1006/jmbi.1996.0477openalex-snapshot
A Fast Flexible Docking Method using an Incremental Construction Algorithm
inferredcites →https://doi.org/10.1006/jmbi.1996.0776openalex-snapshot
Molecular docking to ensembles of protein structures 1 1Edited by B. Honig
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1006/jmbi.1999.3371openalex-snapshot
Knowledge-based scoring function to predict protein-ligand interactions
inferredcites →https://doi.org/10.1006/jmbi.2001.4551openalex-snapshot
FlexE: efficient molecular docking considering protein structure variations
inferredcites →https://doi.org/10.1016/0022-2836(82)90153-xopenalex-snapshot
A geometric approach to macromolecule-ligand interactions
inferredcites →https://doi.org/10.1016/s1093-3263(01)00125-5openalex-snapshot
Consensus scoring for ligand/protein interactions
inferredcites →https://doi.org/10.1016/s1093-3263(02)00164-xopenalex-snapshot
LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites
inferredcites →https://doi.org/10.1021/jm0003992openalex-snapshot
Detailed Analysis of Scoring Functions for Virtual Screening
inferredcites →https://doi.org/10.1021/jm011112jopenalex-snapshot
Successful Virtual Screening for Novel Inhibitors of Human Carbonic Anhydrase: Strategy and Experimental Confirmation
inferredcites →https://doi.org/10.1021/jm0302997openalex-snapshot
Evaluation of Docking Performance: Comparative Data on Docking Algorithms
inferredcites →https://doi.org/10.1021/jm0306430openalex-snapshot
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
inferredcites →https://doi.org/10.1021/jm981037lopenalex-snapshot
F lex S: A Method for Fast Flexible Ligand Superposition
inferredcites →https://doi.org/10.1023/a:1007913026166openalex-snapshot
Multiple automatic base selection: Protein–ligand docking based on incremental construction without manual intervention
inferredcites →https://doi.org/10.1023/a:1007959729800openalex-snapshot
Time-efficient flexible superposition of medium-sized molecules
inferredcites →https://doi.org/10.1023/a:1008027706830openalex-snapshot
RigFit: A new approach to superimposing ligand molecules
inferredcites →https://doi.org/10.1023/a:1016399411208openalex-snapshot
Flexible docking under pharmacophore type constraints
inferredcites →https://doi.org/10.1089/cmb.1998.5.631openalex-snapshot
A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility
inferredcites →https://doi.org/10.2174/1568026043451104openalex-snapshot
Guided Docking Approaches to Structure-Based Design and Screening

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1021/acs.jcim.5b00275openalex-snapshot
HybridDock: A Hybrid Protein–Ligand Docking Protocol Integrating Protein- and Ligand-Based Approaches
inferred← citeshttps://doi.org/10.1021/acs.jcim.9b00686openalex-snapshot
CANDOCK: Chemical Atomic Network-Based Hierarchical Flexible Docking Algorithm Using Generalized Statistical Potentials
inferred← citeshttps://doi.org/10.1021/ci100221gopenalex-snapshot
FLAP: GRID Molecular Interaction Fields in Virtual Screening. Validation using the DUD Data Set
inferred← citeshttps://doi.org/10.1021/ci600342eopenalex-snapshot
Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints
inferred← citeshttps://doi.org/10.1021/ci700368popenalex-snapshot
Novel Approach to Structure-Based Pharmacophore Search Using Computational Geometry and Shape Matching Techniques
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Developing an effective polarizable bond method for small molecules with application to optimized molecular docking
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Identification and biological evaluation of benzimidazole-based compounds as novel TGFβR1 inhibitors
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The covalent docking software landscape: features and applications in drug design
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Classification of Different Approaches for e-Science Applications in Next Generation Computing Infrastructures
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Cloud Infrastructures for In Silico Drug Discovery: Economic and Practical Aspects
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Benchmarking of different molecular docking methods for protein-peptide docking
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3D-QSAR AND CONTOUR MAP ANALYSIS OF TARIQUIDAR ANALOGUES AS MULTIDRUG RESISTANCE PROTEIN-1 (MRP1) INHIBITORS.
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Computational advances in the design and discovery of artemis inhibitors for radiosensitization in cancer therapy
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Comparative Molecular Docking Studies of Selected Phytoconstituents on the Dopamine D3 Receptor (PDB ID: 3PBL) as Potential Anti-Parkinson’s Agents
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Lessons Learnt from COVID-19: Computational Strategies for Facing Present and Future Pandemics
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Construction of Histone–Protein Complex Structures by Peptide Growing
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In Silico Docking: Protocols for Computational Exploration of Molecular Interactions
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