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Modeling Ligand−Receptor Interaction for Some MHC Class II HLA-DR4 Peptide Mimetic Inhibitors Using Several Molecular Docking and 3D QSAR Techniques

https://doi.org/10.1021/ci050140y
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/art.1780400219openalex-snapshot
HLA markers and prediction of clinical course and outcome in rheumatoid arthritis
inferredcites →https://doi.org/10.1006/jmbi.1994.1223openalex-snapshot
The Use of Composite Crystal-field Environments in Molecular Recognition and the de Novo Design of Protein Ligands
inferredcites →https://doi.org/10.1007/978-1-4613-8545-5openalex-snapshot
HLA and Disease Associations
inferredcites →https://doi.org/10.1016/s1074-7613(00)80369-6openalex-snapshot
X-Ray Crystal Structure of HLA-DR4 (DRA*0101, DRB1*0401) Complexed with a Peptide from Human Collagen II
inferredcites →https://doi.org/10.1021/ci00063a006openalex-snapshot
Atomic physicochemical parameters for three dimensional structure directed quantitative structure-activity relationships. 4. Additional parameters for hydrophobic and dispersive interactions and their application for an automated superposition of certain naturally occurring nucleoside antibiotics
inferredcites →https://doi.org/10.1021/ja00226a005openalex-snapshot
Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
inferredcites →https://doi.org/10.1021/jm000034hopenalex-snapshot
Peptide and Peptide Mimetic Inhibitors of Antigen Presentation by HLA-DR Class II MHC Molecules. Design, Structure−Activity Relationships, and X-ray Crystal Structures
inferredcites →https://doi.org/10.1021/jm00050a010openalex-snapshot
Molecular Similarity Indices in a Comparative Analysis (CoMSIA) of Drug Molecules to Correlate and Predict Their Biological Activity
inferredcites →https://doi.org/10.1023/a:1016357811882openalex-snapshot
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
inferredcites →https://doi.org/10.1038/334623a0openalex-snapshot
In vivo competition between self peptides and foreign antigens in T-cell activation
inferredcites →https://doi.org/10.1038/358764a0openalex-snapshot
Predominant naturally processed peptides bound to HLA-DR1 are derived from MHC-related molecules and are heterogeneous in size
inferredcites →https://doi.org/10.1038/364033a0openalex-snapshot
Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
inferredcites →https://doi.org/10.1038/368711a0openalex-snapshot
Three-dimensional structure of a human class II histocompatibility molecule complexed with superantigen
inferredcites →https://doi.org/10.1038/378457a0openalex-snapshot
The structure of an intermediate in class II MHC maturation: CLIP bound to HLA-DR3
inferredcites →https://doi.org/10.1038/384134a0openalex-snapshot
Structure of the complex between human T-cell receptor, viral peptide and HLA-A2
inferredcites →https://doi.org/10.1038/9865openalex-snapshot
Peptidomimetic compounds that inhibit antigen presentation by autoimmune disease-associated class II major histocompatibility molecules
inferredcites →https://doi.org/10.1084/jem.181.5.1847openalex-snapshot
Peptide binding specificity of HLA-DR4 molecules: correlation with rheumatoid arthritis association.
inferredcites →https://doi.org/10.1084/jem.20011194openalex-snapshot
Structure of a Complex of the Human α/β T Cell Receptor (TCR) HA1.7, Influenza Hemagglutinin Peptide, and Major Histocompatibility Complex Class II Molecule, HLA-DR4 (DRA0101 and DRB10401)
inferredcites →https://doi.org/10.1093/protein/8.2.127openalex-snapshot
LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions
inferredcites →https://doi.org/10.1097/00002281-199505000-00009openalex-snapshot
Inherited and noninherited risk factors in rheumatoid arthritis
inferredcites →https://doi.org/10.1126/science.274.5285.209openalex-snapshot
An αβ T Cell Receptor Structure at 2.5 Å and Its Orientation in the TCR-MHC Complex
inferredcites →https://doi.org/10.1126/science.286.5446.1913openalex-snapshot
The Crystal Structure of a T Cell Receptor in Complex with Peptide and MHC Class II
inferredcites →https://doi.org/10.1146/annurev.immunol.15.1.821openalex-snapshot
CAPTURE AND PROCESSING OF EXOGENOUS ANTIGENS FOR PRESENTATION ON MHC MOLECULES
inferredcites →https://doi.org/10.3109/03009749709065718openalex-snapshot
The Effect of HLA-DRB1 Disease Susceptibility Markers on the Expression of RA

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/chin.200549205openalex-snapshot
Modeling Ligand—Receptor Interaction for Some MHC Class II HLA‐DR4 Peptide Mimetic Inhibitors Using Several Molecular Docking and 3D QSAR Techniques.
inferred← citeshttps://doi.org/10.1007/s00044-012-0327-0openalex-snapshot
Development of robust QSAR model using rapid overlay of crystal structures (ROCS) based alignment: a test case of Tubulin inhibitors
inferred← citeshttps://doi.org/10.1007/s00894-011-1094-4openalex-snapshot
Developing consensus 3D-QSAR and pharmacophore models for several beta-secretase, farnesyl transferase and histone deacetylase inhibitors
inferred← citeshttps://doi.org/10.1007/s10822-010-9320-1openalex-snapshot
Screening of benzamidine-based thrombin inhibitors via a linear interaction energy in continuum electrostatics model
inferred← citeshttps://doi.org/10.1016/j.humimm.2008.12.012openalex-snapshot
Class II HLA-peptide binding prediction using structural principles
inferred← citeshttps://doi.org/10.1021/ci200033nopenalex-snapshot
A Molecular Mechanics Approach to Modeling Protein–Ligand Interactions: Relative Binding Affinities in Congeneric Series
inferred← citeshttps://doi.org/10.1021/ci8000056openalex-snapshot
Receptor-Based Modeling and 3D-QSAR for a Quantitative Production of the Butyrylcholinesterase Inhibitors Based on Genetic Algorithm
inferred← citeshttps://doi.org/10.1021/ci800015sopenalex-snapshot
An Integrated Approach to Ligand- and Structure-Based Drug Design: Development and Application to a Series of Serine Protease Inhibitors
inferred← citeshttps://doi.org/10.1021/ci800124gopenalex-snapshot
An Anchor-Dependent Molecular Docking Process for Docking Small Flexible Molecules into Rigid Protein Receptors
inferred← citeshttps://doi.org/10.11606/t.5.2006.tde-08012007-170033openalex-snapshot
Perfil do HLA de classe II de pacientes com hepatite C e características de hepatite auto-imune
inferred← citeshttps://doi.org/10.1186/1745-7580-6-s1-s2openalex-snapshot
pDOCK: a new technique for rapid and accurate docking of peptide ligands to Major Histocompatibility Complexes
inferred← citeshttps://doi.org/10.1371/journal.pone.0017881openalex-snapshot
Design of Glycopeptides Used to Investigate Class II MHC Binding and T-Cell Responses Associated with Autoimmune Arthritis
inferred← citeshttps://doi.org/10.2174/1570163816666190620113944openalex-snapshot
A Definitive Pharmacophore Modelling Study on CDK2 ATP Pocket Binders: Tracing the Path of New Virtual High-Throughput Screenings
inferred← citeshttps://doi.org/10.2174/157340909787580863openalex-snapshot
Computational Intelligence Methods for Docking Scores
inferred← citeshttps://doi.org/10.2174/157340909789054702openalex-snapshot
Recent Studies of QSAR on Inhibitors of Estrogen Receptor and Human Eosinophil Phosphodiesterase
inferred← citeshttps://doi.org/10.5772/17891openalex-snapshot
Structure Based 3D-QSAR Studies on Cholinesterase Inhibitors
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