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PharmID: Pharmacophore Identification Using Gibbs Sampling

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Computer-Assisted Drug Design
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A comparison of the pharmacophore identification programs: Catalyst, DISCO and GASP
inferredcites →https://doi.org/10.1126/science.8211139openalex-snapshot
Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment
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Pharmacophore Modeling and Three Dimensional Database Searching for Drug Design Using Catalyst: Recent Advances
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An introduction to chemoinformatics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Pharmacophores
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Small Molecule Inhibitors: Design and Selection
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Selective Optimization of Side Activities (SOSA): A Promising way for Drug Discovery
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Design and Selection of Small Molecule Inhibitors
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Pharmacophore Models for Virtual Screening
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Pharmacophores in Drug Research
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Generation of three‐dimensional pharmacophore models
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Small molecule superposition: A comprehensive overview on pose scoring of the latest methods
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Some Trends in Chem(o)informatics
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Receptor pharmacophore ensemble (REPHARMBLE): a probabilistic pharmacophore modeling approach using multiple protein-ligand complexes
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Incorporating partial matches within multiobjective pharmacophore identification
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Development and validation of an improved algorithm for overlaying flexible molecules
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Pharmacophore Modeling: 1 – Methods
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Pharmacophore Modeling: 1 – Methods
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2/3D Pharmacophore Definitions and Their Application
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2/3D Pharmacophore definitions and their application
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Pharao: Pharmacophore alignment and optimization
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Hierarchical virtual screening approaches in small molecule drug discovery
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GAPE: An Improved Genetic Algorithm for Pharmacophore Elucidation
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Training a Scoring Function for the Alignment of Small Molecules
inferred← citeshttps://doi.org/10.1021/ci300154nopenalex-snapshot
GRID-Based Three-Dimensional Pharmacophores II: PharmBench, a Benchmark Data Set for Evaluating Pharmacophore Elucidation Methods
inferred← citeshttps://doi.org/10.1021/ci7000583openalex-snapshot
Recursive Distance Partitioning Algorithm for Common Pharmacophore Identification
inferred← citeshttps://doi.org/10.1021/ci700059gopenalex-snapshot
Recent Advances in Chemoinformatics
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Predicting the Accuracy of Ligand Overlay Methods with Random Forest Models
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Common Pharmacophore Identification Using Frequent Clique Detection Algorithm
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Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications
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Multiobjective Optimization of Pharmacophore Hypotheses: Bias Toward Low-Energy Conformations
inferred← citeshttps://doi.org/10.1021/jm900817uopenalex-snapshot
Three-Dimensional Pharmacophore Methods in Drug Discovery
inferred← citeshttps://doi.org/10.1039/9781847558879-00076openalex-snapshot
Pharmacophore-based Virtual Screening in Drug Discovery
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Pharmacophore Models in Drug Design
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IVSPlat 1.0: an integrated virtual screening platform with a molecular graphical interface
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Challenges Predicting Ligand-Receptor Interactions of Promiscuous Proteins: The Nuclear Receptor PXR
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Pharmacophore modelling: applications in drug discovery
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A Guide to In Silico Drug Design
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Graph Applications in Chemoinformatics and Structural Bioinformatics
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