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Mapping Algorithms for Molecular Similarity Analysis and Ligand-Based Virtual Screening: Design of DynaMAD and Comparison with MAD and DMC

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/qsar.200310001openalex-snapshot
An Information‐Theoretic Approach to Descriptor Selection for Database Profiling and QSAR Modeling
inferredcites →https://doi.org/10.1002/series6138openalex-snapshot
Methods and Principles in Medicinal Chemistry
inferredcites →https://doi.org/10.1016/s1359-6446(02)02411-xopenalex-snapshot
Why do we need so many chemical similarity search methods?
inferredcites →https://doi.org/10.1016/s1359-6446(03)02740-5openalex-snapshot
Chemical substructures in drug discovery
inferredcites →https://doi.org/10.1016/s1359644602025722openalex-snapshot
Nonleadlikeness and leadlikeness in biochemical screening
inferredcites →https://doi.org/10.1021/ci0001482openalex-snapshot
Selected Concepts and Investigations in Compound Classification, Molecular Descriptor Analysis, and Virtual Screening
inferredcites →https://doi.org/10.1021/ci000397qopenalex-snapshot
Prediction of Biological Activity for High-Throughput Screening Using Binary Kernel Discrimination
inferredcites →https://doi.org/10.1021/ci0203848openalex-snapshot
Recursive Median Partitioning for Virtual Screening of Large Databases
inferredcites →https://doi.org/10.1021/ci0255026openalex-snapshot
A Novel Shape-Feature Based Approach to Virtual Library Screening
inferredcites →https://doi.org/10.1021/ci025592eopenalex-snapshot
Similarity Searching Using Reduced Graphs
inferredcites →https://doi.org/10.1021/ci0302963openalex-snapshot
Molecular Similarity Analysis and Virtual Screening by Mapping of Consensus Positions in Binary-Transformed Chemical Descriptor Spaces with Variable Dimensionality
inferredcites →https://doi.org/10.1021/ci960090kopenalex-snapshot
Chemical Fragment Generation and Clustering Software
inferredcites →https://doi.org/10.1021/ci970431+openalex-snapshot
Identification of Biological Activity Profiles Using Substructural Analysis and Genetic Algorithms
inferredcites →https://doi.org/10.1021/ci9800211openalex-snapshot
Chemical Similarity Searching
inferredcites →https://doi.org/10.1021/ci980137xopenalex-snapshot
Metric Validation and the Receptor-Relevant Subspace Concept
inferredcites →https://doi.org/10.1021/ci990032+openalex-snapshot
Construction of a Virtual High Throughput Screen by 4D-QSAR Analysis: Application to a Combinatorial Library of Glucose Inhibitors of Glycogen Phosphorylase b
inferredcites →https://doi.org/10.1021/ci990162iopenalex-snapshot
The Characterization of Chemical Structures Using Molecular Properties. A Survey
inferredcites →https://doi.org/10.1021/ci9903049openalex-snapshot
Analysis of a Large Structure/Biological Activity Data Set Using Recursive Partitioning
inferredcites →https://doi.org/10.1021/jm010535iopenalex-snapshot
Data Analysis of High-Throughput Screening Results: Application of Multidomain Clustering to the NCI Anti-HIV Data Set
inferredcites →https://doi.org/10.1021/jm049501bopenalex-snapshot
“Lead Hopping”. Validation of Topomer Similarity as a Superior Predictor of Similar Biological Activities
inferredcites →https://doi.org/10.1021/jm049505gopenalex-snapshot
POT-DMC: A Virtual Screening Method for the Identification of Potent Hits
inferredcites →https://doi.org/10.1021/jm051110popenalex-snapshot
Determination and Mapping of Activity-Specific Descriptor Value Ranges for the Identification of Active Compounds
inferredcites →https://doi.org/10.1038/nature03197openalex-snapshot
Virtual screening of chemical libraries
inferredcites →https://doi.org/10.1038/nrd1549openalex-snapshot
Docking and scoring in virtual screening for drug discovery: methods and applications
inferredcites →https://doi.org/10.1038/nrd791openalex-snapshot
Combinatorial informatics in the post-genomics era
inferredcites →https://doi.org/10.1038/nrd941openalex-snapshot
Integration of virtual and high-throughput screening
inferredcites →https://doi.org/10.2174/0929867013373192openalex-snapshot
The 2-Chlorotrityl Resin a Worthy Addition to the Medicinal Chemists Toolbox
inferredcites →https://doi.org/10.2174/1381612053507549openalex-snapshot
New Methodologies for Ligand-Based Virtual Screening
inferredcites →https://doi.org/10.2174/1386207003331346openalex-snapshot
A Neural Network Based Virtual High Throughput Screening Test for the Prediction of CNS Activity

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/9780470567623.ch4openalex-snapshot
Data Mining Approaches for Compound Selection and Iterative Screening
inferred← citeshttps://doi.org/10.1002/9780470584170.ch3openalex-snapshot
In SilicoScreening
inferred← citeshttps://doi.org/10.1002/9781118618110.ch15openalex-snapshot
Virtual Screening Methods
inferred← citeshttps://doi.org/10.1002/9783527627448.ch13openalex-snapshot
Knowledge‐Based and Computational Approaches to In Vitro Safety Pharmacology
inferred← citeshttps://doi.org/10.1002/9783527628766.biblioopenalex-snapshot
Bibliography
inferred← citeshttps://doi.org/10.1002/9783527633326.ch11openalex-snapshot
Applied Virtual Screening: Strategies, Recommendations, and Caveats
inferred← citeshttps://doi.org/10.1002/9783527645121.ch4openalex-snapshot
Multivariate Analysis of Molecular Descriptors
inferred← citeshttps://doi.org/10.1002/cmdc.200600225openalex-snapshot
Comparison of 2D Fingerprint Methods for Multiple‐Template Similarity Searching on Compound Activity Classes of Increasing Structural Diversity
inferred← citeshttps://doi.org/10.1002/cmdc.200800304openalex-snapshot
Hit Expansion through Computational Selectivity Searching
inferred← citeshttps://doi.org/10.1002/cmdc.200900457openalex-snapshot
Inhibitors of Cathepsins K and S Identified Using the DynaMAD Virtual Screening Algorithm
inferred← citeshttps://doi.org/10.1002/qsar.200610069openalex-snapshot
Towards Unified Compound Screening Strategies: A Critical Evaluation of Error Sources in Experimental and Virtual High‐Throughput Screening
inferred← citeshttps://doi.org/10.1007/s11030-008-9071-2openalex-snapshot
Exploring structure–selectivity relationships of biogenic amine GPCR antagonists using similarity searching and dynamic compound mapping
inferred← citeshttps://doi.org/10.1016/b978-0-443-18638-7.00022-0openalex-snapshot
Chemical space and molecular descriptors for QSAR studies
inferred← citeshttps://doi.org/10.1016/j.ddtec.2006.12.008openalex-snapshot
In silico target fishing: Predicting biological targets from chemical structure
inferred← citeshttps://doi.org/10.1016/j.drudis.2007.01.011openalex-snapshot
Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches
inferred← citeshttps://doi.org/10.1021/ci400359nopenalex-snapshot
Searching for Closely Related Ligands with Different Mechanisms of Action Using Machine Learning and Mapping Algorithms
inferred← citeshttps://doi.org/10.1021/ci800106eopenalex-snapshot
Design and Exploration of Target-Selective Chemical Space Representations
inferred← citeshttps://doi.org/10.1039/9781847558879-00120openalex-snapshot
Molecular Similarity Analysis in Virtual Screening
inferred← citeshttps://doi.org/10.1093/bib/bbp023openalex-snapshot
Recent advances in computer-aided drug design
inferred← citeshttps://doi.org/10.1109/iembs.2008.4650110openalex-snapshot
In silico screening of Rac1 ligand specificity
inferred← citeshttps://doi.org/10.1109/tnb.2012.2198490openalex-snapshot
Comparative Analysis of Rac1 Binding Efficiency With Different Classes of Ligands: Morpholines, Flavonoids and Imidazoles
inferred← citeshttps://doi.org/10.1515/psr-2019-0098openalex-snapshot
A computer-based approach for developing linamarase inhibitory agents
inferred← citeshttps://doi.org/10.2174/09298673113209990001openalex-snapshot
Virtual Screening Strategies in Drug Discovery: A Critical Review
inferred← citeshttps://doi.org/10.2174/1568026619666190816101948openalex-snapshot
Virtual Screening Techniques in Drug Discovery: Review and Recent Applications
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Structure –Activity Relationships by Autocorrelation Descriptors and Genetic Algorithms
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Virtual Screening Strategies in Drug Design
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