On the public citation graph

Comparison of Virtual High-Throughput Screening Methods for the Identification of Phosphodiesterase-5 Inhibitors

0 signed · 73 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1096-987x(199604)17:5/6<490::aid-jcc1>3.0.co;2-popenalex-snapshot
Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94
inferredcites →https://doi.org/10.1002/(sici)1096-987x(20000130)21:2<132::aid-jcc5>3.0.co;2-popenalex-snapshot
Fast, efficient generation of high-quality atomic charges. AM1-BCC model: I. Method
inferredcites →https://doi.org/10.1002/jcc.10349openalex-snapshot
A point‐charge force field for molecular mechanics simulations of proteins based on condensed‐phase quantum mechanical calculations
inferredcites →https://doi.org/10.1002/jcc.10379openalex-snapshot
Converging free energy estimates: MM‐PB(GB)SA studies on the protein–protein complex Ras–Raf
inferredcites →https://doi.org/10.1002/jcc.20035openalex-snapshot
Development and testing of a general amber force field
inferredcites →https://doi.org/10.1007/s10822-004-3752-4openalex-snapshot
BODIL: a molecular modeling environment for structure-function analysis and drug design
inferredcites →https://doi.org/10.1007/s10822-008-9189-4openalex-snapshot
Community benchmarks for virtual screening
inferredcites →https://doi.org/10.1016/0021-9991(77)90098-5openalex-snapshot
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
inferredcites →https://doi.org/10.1016/j.amjcard.2005.06.091openalex-snapshot
Effect of Sildenafil on Cardiac Performance in Patients With Heart Failure
inferredcites →https://doi.org/10.1016/j.bcp.2008.01.019openalex-snapshot
An insight into the pharmacophores of phosphodiesterase-5 inhibitors from synthetic and crystal structural studies
inferredcites →https://doi.org/10.1016/j.bmc.2007.08.019openalex-snapshot
Validation of an automated procedure for the prediction of relative free energies of binding on a set of aldose reductase inhibitors
inferredcites →https://doi.org/10.1016/j.drudis.2010.03.013openalex-snapshot
Pharmacophore modeling and applications in drug discovery: challenges and recent advances
inferredcites →https://doi.org/10.1016/j.jmgm.2005.12.005openalex-snapshot
Automatic atom type and bond type perception in molecular mechanical calculations
inferredcites →https://doi.org/10.1016/j.molcel.2004.07.005openalex-snapshot
A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases
inferredcites →https://doi.org/10.1016/j.str.2004.10.004openalex-snapshot
Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases
inferredcites →https://doi.org/10.1016/s0076-6879(97)77028-9openalex-snapshot
[26] Raster3D: Photorealistic molecular graphics
inferredcites →https://doi.org/10.1016/s0090-4295(02)02075-7openalex-snapshot
Efficacy of sildenafil as adjuvant therapy to selective serotonin reuptake inhibitor in alleviating premature ejaculation
inferredcites →https://doi.org/10.1016/s0735-1097(00)00790-7openalex-snapshot
Acute type 5 phosphodiesterase inhibition with sildenafil enhances flow-mediated vasodilation in patients with chronic heart failure
inferredcites →https://doi.org/10.1016/s0735-1097(02)02139-3openalex-snapshot
The effect of sildenafil on human vascular function, platelet activation, and myocardial ischemia
inferredcites →https://doi.org/10.1021/ci100015jopenalex-snapshot
ConfGen: A Conformational Search Method for Efficient Generation of Bioactive Conformers
inferredcites →https://doi.org/10.1021/ci100121copenalex-snapshot
Efficient Virtual Screening Using Multiple Protein Conformations Described as Negative Images of the Ligand-Binding Site
inferredcites →https://doi.org/10.1021/ci700052xopenalex-snapshot
Comparison of Topological, Shape, and Docking Methods in Virtual Screening
inferredcites →https://doi.org/10.1021/ci700368popenalex-snapshot
Novel Approach to Structure-Based Pharmacophore Search Using Computational Geometry and Shape Matching Techniques
inferredcites →https://doi.org/10.1021/ci800110popenalex-snapshot
FieldScreen: Virtual Screening Using Molecular Fields. Application to the DUD Data Set
inferredcites →https://doi.org/10.1021/ci800303kopenalex-snapshot
Comparison of Ligand- and Structure-Based Virtual Screening on the DUD Data Set
inferredcites →https://doi.org/10.1021/ci800315dopenalex-snapshot
ShaEP: Molecular Overlay Based on Shape and Electrostatic Potential
inferredcites →https://doi.org/10.1021/ci8004226openalex-snapshot
How To Optimize Shape-Based Virtual Screening: Choosing the Right Query and Including Chemical Information
inferredcites →https://doi.org/10.1021/ci900056copenalex-snapshot
Comparison of Several Molecular Docking Programs: Pose Prediction and Virtual Screening Accuracy
inferredcites →https://doi.org/10.1021/ci9002365openalex-snapshot
Improving Virtual Screening Performance against Conformational Variations of Receptors by Shape Matching with Ligand Binding Pocket
inferredcites →https://doi.org/10.1021/j100384a009openalex-snapshot
Ion-water interaction potentials derived from free energy perturbation simulations
inferredcites →https://doi.org/10.1021/ja9939385openalex-snapshot
Molecular Dynamics Simulations of Nucleic Acids with a Generalized Born Solvation Model
inferredcites →https://doi.org/10.1021/jm049081qopenalex-snapshot
Validation and Use of the MM-PBSA Approach for Drug Discovery
inferredcites →https://doi.org/10.1021/jm050362nopenalex-snapshot
A Critical Assessment of Docking Programs and Scoring Functions
inferredcites →https://doi.org/10.1021/jm060113eopenalex-snapshot
A Novel Series of Potent and Selective PDE5 Inhibitors with Potential for High and Dose-Independent Oral Bioavailability
inferredcites →https://doi.org/10.1021/jm0608356openalex-snapshot
Benchmarking Sets for Molecular Docking
inferredcites →https://doi.org/10.1056/nejmoa050010openalex-snapshot
Sildenafil Citrate Therapy for Pulmonary Arterial Hypertension
inferredcites →https://doi.org/10.1063/1.448118openalex-snapshot
Molecular dynamics with coupling to an external bath
inferredcites →https://doi.org/10.1063/1.464397openalex-snapshot
Particle mesh Ewald: An N ⋅log( N ) method for Ewald sums in large systems
inferredcites →https://doi.org/10.1063/1.470043openalex-snapshot
Accuracy and efficiency of the particle mesh Ewald method
inferredcites →https://doi.org/10.1074/jbc.m512527200openalex-snapshot
Multiple Conformations of Phosphodiesterase-5
inferredcites →https://doi.org/10.1093/nar/28.1.235openalex-snapshot
The Protein Data Bank
inferredcites →https://doi.org/10.1107/s0021889883010985openalex-snapshot
Analytical molecular surface calculation
inferredcites →https://doi.org/10.1107/s0021889891004399openalex-snapshot
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures
inferredcites →https://doi.org/10.1107/s0907444993011333openalex-snapshot
Detection, delineation, measurement and display of cavities in macromolecular structures
inferredcites →https://doi.org/10.2165/00003495-200565120-00003openalex-snapshot
A Comparative Review of the Options for Treatment of Erectile Dysfunction

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-1-0716-1209-5_7openalex-snapshot
Negative Image-Based Screening: Rigid Docking Using Cavity Information
inferred← citeshttps://doi.org/10.1007/978-1-0716-1209-5_8openalex-snapshot
Negative Image-Based Rescoring: Using Cavity Information to Improve Docking Screening
inferred← citeshttps://doi.org/10.1007/s10822-015-9870-3openalex-snapshot
Ultrafast protein structure-based virtual screening with Panther
inferred← citeshttps://doi.org/10.1007/s11030-011-9335-0openalex-snapshot
Combining 2D and 3D in silico methods for rapid selection of potential PDE5 inhibitors from multimillion compounds’ repositories: biological evaluation
inferred← citeshttps://doi.org/10.1007/s12035-019-01775-7openalex-snapshot
A Perspective: Active Role of Lipids in Neurotransmitter Dynamics
inferred← citeshttps://doi.org/10.1016/j.bbabio.2013.02.005openalex-snapshot
Key role of water in proton transfer at the Qo-site of the cytochrome bc1 complex predicted by atomistic molecular dynamics simulations
inferred← citeshttps://doi.org/10.1016/j.jmgm.2015.10.012openalex-snapshot
Case-specific performance of MM-PBSA, MM-GBSA, and SIE in virtual screening
inferred← citeshttps://doi.org/10.1016/j.jmgm.2015.12.006openalex-snapshot
Identification of estrogen receptor α ligands with virtual screening techniques
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c01145openalex-snapshot
Optimization of Cavity-Based Negative Images to Boost Docking Enrichment in Virtual Screening
inferred← citeshttps://doi.org/10.1021/acs.jcim.9b00383openalex-snapshot
Getting Docking into Shape Using Negative Image-Based Rescoring
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.5c02620openalex-snapshot
Enhancing the Predictive Power of Macrocyclic Drug Permeability by Knowledge Distillation from Analogous Pretraining Data
inferred← citeshttps://doi.org/10.1021/acsomega.8b00603openalex-snapshot
Discovery of Retinoic Acid-Related Orphan Receptor γt Inverse Agonists via Docking and Negative Image-Based Screening
inferred← citeshttps://doi.org/10.1021/ci4002475openalex-snapshot
MMGBSA As a Tool To Understand the Binding Affinities of Filamin–Peptide Interactions
inferred← citeshttps://doi.org/10.1039/d3nj02676kopenalex-snapshot
Insecticide discovery by drug repurposing: new synergistic inhibitors against Periplaneta americana
inferred← citeshttps://doi.org/10.1080/14756366.2018.1452919openalex-snapshot
Blocking oestradiol synthesis pathways with potent and selective coumarin derivatives
inferred← citeshttps://doi.org/10.1111/cbdd.13446openalex-snapshot
Suitability of MMGBSA for the selection of correct ligand binding modes from docking results
inferred← citeshttps://doi.org/10.1111/cbdd.13584openalex-snapshot
Fragment‐ and negative image‐based screening of phosphodiesterase 10A inhibitors
inferred← citeshttps://doi.org/10.1186/s13321-024-00857-6openalex-snapshot
Building shape-focused pharmacophore models for effective docking screening
inferred← citeshttps://doi.org/10.1371/journal.pone.0198484openalex-snapshot
Insight into the substrate specificity change caused by the Y227H mutation of α-glucosidase III from the European honeybee (Apis mellifera) through molecular dynamics simulations
inferred← citeshttps://doi.org/10.2174/1573409914666181018141602openalex-snapshot
Virtual Screening Meets Deep Learning
inferred← citeshttps://doi.org/10.3109/00498254.2015.1048327openalex-snapshot
Inhibitory effects and oxidation of 6-methylcoumarin, 7-methylcoumarin and 7-formylcoumarinviahuman CYP2A6 and its mouse and pig orthologous enzymes
inferred← citeshttps://doi.org/10.3389/fchem.2018.00041openalex-snapshot
Structure-Activity Relationship Analysis of 3-Phenylcoumarin-Based Monoamine Oxidase B Inhibitors
inferred← citeshttps://doi.org/10.3389/fphar.2018.00260openalex-snapshot
Improving Docking Performance Using Negative Image-Based Rescoring
inferred← citeshttps://doi.org/10.3390/biom10081114openalex-snapshot
Predicted Hotspot Residues Involved in Allosteric Signal Transmission in Pro-Apoptotic Peptide—Mcl1 Complexes
inferred← citeshttps://doi.org/10.3390/ijms20112779openalex-snapshot
A Practical Perspective: The Effect of Ligand Conformers on the Negative Image-Based Screening
inferred← citeshttps://doi.org/10.3390/ijms232113513openalex-snapshot
Identification of Selective BRD9 Inhibitor via Integrated Computational Approach
inferred← citeshttps://doi.org/10.3390/life12050659openalex-snapshot
Computational Investigations on the Natural Small Molecule as an Inhibitor of Programmed Death Ligand 1 for Cancer Immunotherapy
inferred← citeshttps://doi.org/10.3390/molecules28083420openalex-snapshot
Virtual Screening Strategy to Identify Retinoic Acid-Related Orphan Receptor γt Modulators
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.