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Minor Groove Binders and Drugs Targeting Proteins Cover Complementary Regions in Chemical Shape Space

https://doi.org/10.1021/ci200237c

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Finding potential DNA-binding compounds by using molecular shape

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Rapid measurement of binding constants and heats of binding using a new titration calorimeter

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Drug-protein interactions: Two-site binding of heterocyclic ligands to a monomeric hemoglobin

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DNA binding potential and cytotoxicity of newly designed pyrrolobenzodiazepine dimers linked through a piperazine side-armed-alkane spacer

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Targeting the DNA minor groove with fused ring dicationic compounds: Comparison of in silico screening and a high-resolution crystal structure

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Structural binding evidence of the trypanocidal drugs Berenil® and Pentacarinate® active principles to a serine protease model

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Regulation of gene expression with pyrrole–imidazole polyamides

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Energetic Diversity of DNA Minor-groove Recognition by Small Molecules Displayed Through Some Model Ligand-DNA Systems

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CHEMOTHERAPY OF EXPERIMENTAL TRYPANOSOMIASIS

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Synthetic DNA minor groove-binding drugs☆☆Editor's Note: Figures 1–99 appear throughout text. Structures 1–271 appear together at the end of this article, although Structures 25, 111–147, 162–181, 182–188, and 241–255 also appear within Tables 1–5.

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Recognition of the DNA minor groove by pyrrole-imidazole polyamides

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Assessment of solution-phase positional scanning libraries based on distamycin A for the discovery of new DNA binding agents

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A widely applicable set of descriptors

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Pentamidine uptake and resistance in pathogenic protozoa: past, present and future

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The unique structure of A-tracts and intrinsic DNA bending

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Molecular structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor groove binding drug netropsin

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Binding of a Hoechst dye to d(CGCGATATCGCG) and its influence on the conformation of the DNA fragment

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Unusually Strong Binding to the DNA Minor Groove by a Highly Twisted Benzimidazole Diphenylether: Induced Fit and Bound Water

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A Crystallographic and Spectroscopic Study of the Complex between d(CGCGAATTCGCG)2 and 2,5-Bis(4-guanylphenyl)furan, an Analogue of Berenil. Structural Origins of Enhanced DNA-Binding Affinity

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Crystal Structure of d(GGCCAATTGG) Complexed with DAPI Reveals Novel Binding Mode,

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Modulating Hypoxia-Inducible Transcription by Disrupting the HIF-1–DNA Interface

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Consideration of Molecular Weight during Compound Selection in Virtual Target-Based Database Screening

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ZINC − A Free Database of Commercially Available Compounds for Virtual Screening

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Comparison of Computational Methods to Model DNA Minor Groove Binders

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DNA Minor Groove Pharmacophores Describing Sequence Specific Properties

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Fast and Efficient in Silico 3D Screening: Toward Maximum Computational Efficiency of Pharmacophore-Based and Shape-Based Approaches

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Lessons in Molecular Recognition. 2. Assessing and Improving Cross-Docking Accuracy

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How To Optimize Shape-Based Virtual Screening: Choosing the Right Query and Including Chemical Information

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Hydrogen-Bonding Patterns of Minor Groove-Binder−DNA Complexes Reveal Criteria for Discovery of New Scaffolds

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A Spectrophotometric Investigation of the Interaction of Iodine with Aromatic Hydrocarbons

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NMR Structure of a Cyclic Polyamide−DNA Complex

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A High-Throughput, High-Resolution Strategy for the Study of Site-Selective DNA Binding Agents: Analysis of a “Highly Twisted” Benzimidazole-Diamidine

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Minimization of a Protein−DNA Dimerizer

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Discovery of Inhibitors of Aberrant Gene Transcription from Libraries of DNA Binding Molecules: Inhibition of LEF-1-Mediated Gene Transcription and Oncogenic Transformation

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Cyclic Pyrrole−Imidazole Polyamides Targeted to the Androgen Response Element

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Total Synthesis of Distamycin A and 2640 Analogues: A Solution-Phase Combinatorial Approach to the Discovery of New, Bioactive DNA Binding Agents and Development of a Rapid, High-Throughput Screen for Determining Relative DNA Binding Affinity or DNA Binding Sequence Selectivity

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A New Class of Symmetric Bisbenzimidazole-Based DNA Minor Groove-Binding Agents Showing Antitumor Activity

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Virtual Screening of DNA Minor Groove Binders

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Antimicrobial Lexitropsins Containing Amide, Amidine, and Alkene Linking Groups

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Bioactive Compounds from Aquatic and Terrestrial Sources

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Regulation of gene expression by small molecules

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The role of DNA shape in protein–DNA recognition

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DNA minor-groove recognition by small molecules (up to 2000)

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Symmetric bis-benzimidazoles: new sequence-selective DNA-binding molecules

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Two 1 : 1 binding modes for distamycin in the minor groove of d(GGCCAATTGG)

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Minor groove binding of a bis-quaternary ammonium compound: the crystal structure of SN 7167 bound to d(CGCGAATTCGCG)2

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DNA minor groove recognition by bis-benzimidazole analogues of Hoechst 33258: insights into structure-DNA affinity relationships assessed by fluorescence titration measurements

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Therapeutic modulation of endogenous gene function by agents with designed DNA-sequence specificities

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Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations

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Direct inhibition of the DNA-binding activity of POU transcription factors Pit-1 and Brn-3 by selective binding of a phenyl-furan-benzimidazole dication

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Accumulation and Intracellular Distribution of Antitrypanosomal Diamidine Compounds DB75 and DB820 in African Trypanosomes

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Antifungal and antibacterial activities of diarylamidine derivatives

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Origins of Specificity in Protein-DNA Recognition

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Minor groove binders 1998 – 2004

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Programmable DNA Binding Oligomers for Control of Transcription

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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